Prupe.7G256600_v2.0.a1

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014522
Physical Location & Seq
Forward (+)
21481510 .. 21485289
3780 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G256600.1

Sequence Viewer

Length: 774 bp
ATGGGAATTCAGAAGCCTGCGTGGTTGGAAGCCCTCTATACTCAGAAGTTCTTTGCCGGTTGCTCCTATCATGAAACCGCTAAAAAGAATGAAAAGAATATCTGTTGCTTGGATTGTTGCATCAGTATATGCCCCCATTGTCTGCCATCCCATCGTTTTCATAAGCTCCTTCAAATTCGTCGTTATGTATACCATGATGTTGTCCGATTGGAAGATCTTCAAAAGCTCATAGACTGTAAGAATGTTCAGGCATATACAATCAATAGTGCCAAAGTGGTGTTCATCAAGAAAAGACCTCAGAACAGGCAATTCAAGGGTTCTGGAAACAACTGCACTTCCTGTGACAGAAGTCTTCAAGAACCTTATATCCATTGCTCTCTCGGATGCAAGGTGGACTATCTCCTTAAATTGAACAAGGACCTCTCTCCTTTCCTAAAGAAATGCAACTCTCTTCAACTCAGTCCTGACTTCTTGGTTCCTCTTTCTGATACCGGAGACGAGGAGATGACGAGTGATCAGACCAACCCTCATTCTACAATTGTGGACTGCGATGACCCGATGAGCTCATCATCATCCGGGTCATCAGGGTCCGAGAACATGAGCATGAGCATGAACATGGGATACAGACATCATGAGATTGTCCGGAAGAAGAGAAGTGGACTGAATTATGCTTCATTGTGCGGAAGATCAGCTCATAAAGTTTCAGACGAGGACATGGCCTCGAGCATGATCAGTAGGAGAAAACGCATTCCTCATAGATCTCCTCTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

258

Amino Acids

29.17

Weight (kDa)

8.88

Isoelectric Point (pI)

59.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014522)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G12646 AT2G12646 AT2G12646
fragaria_vesca FvH4_1g01900
malus_domestica MD02G1017000.v1.1 MD15G1161500.v1.1
prunus_persica Prupe.7G256600_v2.0.a1
pyrus_communis pycom02g01530
rosa_chinensis RchiOBHm_Chr2g0086911
rosa_laevigata RLG00000015815
rosa_roxburghii Rroxscaffold_2G00154030
rosa_rugosa Rorug01G0470600
rosa_samantha Rh2AG023400 Rh2BG024100 Rh2CG024300 Rh2DG024200
rosa_wichuraiana Rw2G001850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 189
AccIII TCCGGA 1 cut(s) 642
AciI CCGC 2 cut(s) 78, 681
AcsI RAATTY 2 cut(s) 6, 174
AgsI TTSAA 6 cut(s) 173, 221, 313, 356, 412, 455
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AloI GAACNNNNNNTCC 2 cut(s) 351, 383
AluBI AGCT 4 cut(s) 166, 226, 564, 692
AluI AGCT 4 cut(s) 166, 226, 564, 692
Alw21I GWGCWC 1 cut(s) 566
Alw26I GTCTC 1 cut(s) 489
Ama87I CYCGRG 1 cut(s) 721
Aor13HI TCCGGA 1 cut(s) 642
AoxI GGCC 1 cut(s) 717
ApoI RAATTY 2 cut(s) 6, 174
Asp700I GAANNNNTTC 1 cut(s) 216
AspS9I GGNCC 2 cut(s) 418, 588
AsuC2I CCSGG 1 cut(s) 577
AvaI CYCGRG 1 cut(s) 721
AvaII GGWCC 2 cut(s) 418, 588
BanII GRGCYC 1 cut(s) 566
BbsI GAAGAC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 566
BccI CCATC 2 cut(s) 154, 159
BciVI GTATCC 1 cut(s) 614
BclI TGATCA 2 cut(s) 514, 729
BcnI CCSGG 1 cut(s) 577
BcoDI GTCTC 1 cut(s) 489
BfuI GTATCC 1 cut(s) 614
BglII AGATCT 2 cut(s) 214, 758
Bme1390I CCNGG 1 cut(s) 577
Bme18I GGWCC 2 cut(s) 418, 588
BmeT110I CYCGRG 1 cut(s) 721
BmgT120I GGNCC 2 cut(s) 418, 588
BmiI GGNNCC 2 cut(s) 477, 589
BmrFI CCNGG 1 cut(s) 577
BmsI GCATC 2 cut(s) 129, 374
BoxI GACNNNNGTC 1 cut(s) 348
BpiI GAAGAC 1 cut(s) 344
BpuMI CCSGG 1 cut(s) 577
BsaWI WCCGGW 2 cut(s) 491, 642
Bse118I RCCGGY 1 cut(s) 56
Bse3DI GCAATG 1 cut(s) 370
BseAI TCCGGA 1 cut(s) 642
BseGI GGATG 3 cut(s) 146, 389, 572
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 3 cut(s) 56, 311, 472
BseRI GAGGAG 2 cut(s) 515, 753
BsgI GTGCAG 1 cut(s) 316
BshFI GGCC 1 cut(s) 719
BsiHKAI GWGCWC 1 cut(s) 566
BsiHKCI CYCGRG 1 cut(s) 721
BsiSI CCGG 4 cut(s) 57, 492, 576, 643
BsmAI GTCTC 1 cut(s) 489
BsmBI CGTCTC 1 cut(s) 489
BsmI GAATGC 1 cut(s) 747
BsnI GGCC 1 cut(s) 719
BsoBI CYCGRG 1 cut(s) 721
Bsp1286I GDGCHC 1 cut(s) 566
Bsp13I TCCGGA 1 cut(s) 642
Bsp143I GATC 5 cut(s) 214, 514, 686, 729, 758
BspACI CCGC 2 cut(s) 78, 681
BspANI GGCC 1 cut(s) 719
BspCNI CTCAG 3 cut(s) 55, 310, 471
BspEI TCCGGA 1 cut(s) 642
BspHI TCATGA 2 cut(s) 70, 631
BspLI GGNNCC 2 cut(s) 477, 589
BsrDI GCAATG 1 cut(s) 370
BsrFI RCCGGY 1 cut(s) 56
BssAI RCCGGY 1 cut(s) 56
BssMI GATC 5 cut(s) 214, 514, 686, 729, 758
BssNAI GTATAC 1 cut(s) 190
Bst1107I GTATAC 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 2 cut(s) 456, 644
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 3 cut(s) 42, 297, 458
BstF5I GGATG 3 cut(s) 146, 389, 572
BstKTI GATC 5 cut(s) 217, 517, 689, 732, 761
BstMAI GTCTC 1 cut(s) 489
BstMBI GATC 5 cut(s) 214, 514, 686, 729, 758
BstPAI GACNNNNGTC 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 575
BstV2I GAAGAC 1 cut(s) 344
BstX2I RGATCY 2 cut(s) 214, 758
BstYI RGATCY 2 cut(s) 214, 758
BstZ17I GTATAC 1 cut(s) 190
BsuI GTATCC 1 cut(s) 614
BsuRI GGCC 1 cut(s) 719
BtgZI GCGATG 1 cut(s) 564
BtsCI GGATG 3 cut(s) 146, 389, 572
Cac8I GCNNGC 1 cut(s) 18
CciI TCATGA 2 cut(s) 70, 631
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 418, 588
CviAII CATG 9 cut(s) 71, 194, 598, 604, 610, 616, 632, 715, 727
CviJI RGCY 7 cut(s) 16, 32, 166, 226, 564, 692, 719
CviKI_1 RGCY 7 cut(s) 16, 32, 166, 226, 564, 692, 719
DdeI CTNAG 3 cut(s) 42, 297, 458
DpnI GATC 5 cut(s) 216, 516, 688, 731, 760
DpnII GATC 5 cut(s) 214, 514, 686, 729, 758
Eam1104I CTCTTC 2 cut(s) 456, 644
EarI CTCTTC 2 cut(s) 456, 644
Ecl136II GAGCTC 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 566
Eco47I GGWCC 2 cut(s) 418, 588
Eco53kI GAGCTC 1 cut(s) 564
Eco88I CYCGRG 1 cut(s) 721
EcoICRI GAGCTC 1 cut(s) 564
EcoO109I RGGNCCY 1 cut(s) 418
EcoRI GAATTC 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 566
Esp3I CGTCTC 1 cut(s) 489
FaeI CATG 9 cut(s) 74, 197, 601, 607, 613, 619, 635, 718, 730
FatI CATG 9 cut(s) 70, 193, 597, 603, 609, 615, 631, 714, 726
FbaI TGATCA 2 cut(s) 514, 729
FblI GTMKAC 1 cut(s) 189
FokI GGATG 3 cut(s) 133, 396, 559
FriOI GRGCYC 1 cut(s) 566
HaeIII GGCC 1 cut(s) 719
HapII CCGG 4 cut(s) 57, 492, 576, 643
Hin1II CATG 9 cut(s) 74, 197, 601, 607, 613, 619, 635, 718, 730
HpaII CCGG 4 cut(s) 57, 492, 576, 643
Hpy166II GTNNAC 4 cut(s) 190, 394, 544, 659
Hpy188I TCNGA 9 cut(s) 12, 45, 206, 300, 383, 487, 519, 592, 706
Hpy188III TCNNGA 7 cut(s) 71, 286, 321, 356, 464, 632, 643
Hpy8I GTNNAC 4 cut(s) 190, 394, 544, 659
Hpy99I CGWCG 1 cut(s) 183
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 4 cut(s) 120, 333, 387, 444
HpyF3I CTNAG 3 cut(s) 42, 297, 458
Hsp92II CATG 9 cut(s) 74, 197, 601, 607, 613, 619, 635, 718, 730
Kpn2I TCCGGA 1 cut(s) 642
Ksp22I TGATCA 2 cut(s) 514, 729
Kzo9I GATC 5 cut(s) 214, 514, 686, 729, 758
LmnI GCTCC 2 cut(s) 68, 171
LweI GCATC 2 cut(s) 129, 374
MaeIII GTNAC 1 cut(s) 341
MalI GATC 5 cut(s) 216, 516, 688, 731, 760
MboI GATC 5 cut(s) 214, 514, 686, 729, 758
MboII GAAGA 7 cut(s) 209, 224, 344, 443, 658, 661, 696
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 2 cut(s) 214, 758
MhlI GDGCHC 1 cut(s) 566
MluCI AATT 6 cut(s) 6, 174, 308, 407, 537, 664
MmeI TCCRAC 1 cut(s) 6
MroI TCCGGA 1 cut(s) 642
MroXI GAANNNNTTC 1 cut(s) 216
MseI TTAA 1 cut(s) 405
MslI CAYNNNNRTG 3 cut(s) 602, 608, 614
MspI CCGG 4 cut(s) 57, 492, 576, 643
MspR9I CCNGG 1 cut(s) 577
MunI CAATTG 1 cut(s) 537
Mva1269I GAATGC 1 cut(s) 747
NciI CCSGG 1 cut(s) 577
NdeII GATC 5 cut(s) 214, 514, 686, 729, 758
NlaIII CATG 9 cut(s) 74, 197, 601, 607, 613, 619, 635, 718, 730
NlaIV GGNNCC 2 cut(s) 477, 589
NmuCI GTSAC 1 cut(s) 341
PaeR7I CTCGAG 1 cut(s) 721
PagI TCATGA 2 cut(s) 70, 631
PctI GAATGC 1 cut(s) 747
PdmI GAANNNNTTC 1 cut(s) 216
PpuMI RGGWCCY 1 cut(s) 418
PshAI GACNNNNGTC 1 cut(s) 348
Psp124BI GAGCTC 1 cut(s) 566
Psp5II RGGWCCY 1 cut(s) 418
PspN4I GGNNCC 2 cut(s) 477, 589
PspPI GGNCC 2 cut(s) 418, 588
PspPPI RGGWCCY 1 cut(s) 418
PspXI VCTCGAGB 1 cut(s) 721
PsrI GAACNNNNNNTAC 2 cut(s) 605, 637
PsuI RGATCY 2 cut(s) 214, 758
RseI CAYNNNNRTG 3 cut(s) 602, 608, 614
SacI GAGCTC 1 cut(s) 566
SaqAI TTAA 1 cut(s) 405
Sau3AI GATC 5 cut(s) 214, 514, 686, 729, 758
Sau96I GGNCC 2 cut(s) 418, 588
ScrFI CCNGG 1 cut(s) 577
SduI GDGCHC 1 cut(s) 566
SetI ASST 8 cut(s) 168, 228, 298, 364, 393, 423, 566, 694
SfaNI GCATC 2 cut(s) 129, 374
Sfr274I CTCGAG 1 cut(s) 721
SinI GGWCC 2 cut(s) 418, 588
SlaI CTCGAG 1 cut(s) 721
SmiMI CAYNNNNRTG 3 cut(s) 602, 608, 614
SmlI CTYRAG 1 cut(s) 721
SmoI CTYRAG 1 cut(s) 721
Sse9I AATT 6 cut(s) 6, 174, 308, 407, 537, 664
SsiI CCGC 2 cut(s) 78, 681
SstI GAGCTC 1 cut(s) 566
StyD4I CCNGG 1 cut(s) 575
TaaI ACNGT 1 cut(s) 236
TaqI TCGA 1 cut(s) 722
TasI AATT 6 cut(s) 6, 174, 308, 407, 537, 664
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TseFI GTSAC 1 cut(s) 341
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 6 cut(s) 87, 105, 149, 271, 626, 663
VpaK11BI GGWCC 2 cut(s) 418, 588
XapI RAATTY 2 cut(s) 6, 174
XhoI CTCGAG 1 cut(s) 721
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.