AT2G13370

chromatin remodeling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007957
Physical Location & Seq
Reverse (-)
5544054 .. 5556560
12507 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G13370.2

Sequence Viewer

Length: 5175 bp
ATGGCTTTCTTTAGGAACTACTCAAACGATACTGTGTCACATAATGTTCTTGATGAAAATGAGGAGCGGCAAAATGCTGCTACTTTTCAGAGTTCACCTTTGAATGAAGATGTGGATGGTACTTATAGTGAAAGAGGCTTTGACATGAACATGGACGTACAGTATCAAAGTGACCCAGAACCAGGATGTAGTATTAGGCAGCCAAATGAGACAGCAGTTGATAATGTAGCTGATCCTGTGGATTCCCATTATCAATCTTCGACAAAGAGATTGGGTGTAACTGGTAGATGGGGTTCCACATTTTGGAAAGATTGTCAGCCAATGGGACAAAGAGAGGGTTCTGATCCTGCCAAAGATTCACAATCCGGTTACAAAGAAGCATATCATAGTGAAGATAATCACTCAAATGACCGGAGTGAAAAGTTAGATTCTGAAAATGAAAATGATAATGAAAATGAGGAGGAGGATAATGAAATGAACAAGCATCAAAGTGGTCAAGCTGATGTCCCAGCAGATGAAATGTTGTCTGATGAATATTATGAACAAGATGAAGATAATCAAAGCGACCATGTGCACTACAAAGGGTATAGTAATCCTACAAATTCTAGATCACTGCCAAAGGCAGGATCTGCTGTCCATAGCAACTCAAGGACTTCAAGAGCAATTCACAAAAACATTCACTATAGTGATAGTAATCATGACCACAATGGGGATGCTGATATGGACTATGAAGAGGAGGAAGATGAGGATGACCCTGAAGATGCTGACTTTGAGCCCTATGATGCTGCTGATGATGGTGGTGCAAGTAAAAAGCATGGCCAAGGTTGGGACGTTTCTGATGAAGACCCTGAGAGTGATGAAGAAATTGATCTTTCCGATTACGAGGACGACTACGGAACAAAAAAGCCCAAGGTTAGGCAACAAAGTAAAGGTTTCCGGAAATCAAGCGCTGGACTCGAACGAAAATCATTCCATGTTTCTAGTCGACAAAAGAGGAAAACATCATATCAAGATGACGACTCAGAGGAAGACTCTGAAAATGACAATGATGAGGGTTTTAGAAGCCTGGCCAGAAGAGGCACAACTCTCCGACAAAACAATGGAAGGTCCACCAATACCATAGGACAGAGTAGTGAAGTTCGCAGCTCCACCCGATCAGTTCGTAAAGTCTCTTATGTAGAGAGTGAAGACAGTGAAGATATAGATGATGGGAAAAATCGTAAAAACCAAAAGGATGACATTGAAGAGGAGGATGCTGATGTTATTGAAAAAGTGCTCTGGCATCAGCTGAAGGGTATGGGTGAAGATGTTCAGACAAATAACAAATCAACAGTTCCTGTTCTAGTAAGCCAACTGTTTGATACTGAGCCAGATTGGAATGAAATGGAATTCCTTATAAAATGGAAAGGCCAATCACACTTGCATTGTCAGTGGAAAACGTTGAGTGATCTCCAAAATCTTAGTGGATTCAAGAAGGTTCTTAACTATACAAAGAAAGTGACGGAGGAGATTAGGTACAGGACAGCACTCTCGCGAGAGGAGATTGAGGTCAACGATGTGAGCAAAGAAATGGATCTGGACATCATTAAGCAGAATAGTCAGGTAGAAAGAATAATTGCAGATCGAATAAGCAAAGATGGTTTAGGTGATGTTGTACCAGAGTATCTAGTAAAGTGGCAAGGGCTATCTTATGCTGAAGCAACTTGGGAGAAGGATGTCGATATAGCATTTGCACAAGTTGCTATTGATGAGTACAAGGCTCGTGAAGTTTCAATTGCAGTGCAAGGGAAAATGGTGGAACAGCAGCGTACAAAAGGAAAAGCGAGCTTGAGGAAGCTTGACGAGCAGCCTGAGTGGCTAATTGGAGGTACACTACGTGACTATCAGCTGGAGGGTTTGAATTTTCTTGTCAACAGCTGGCTTAATGATACTAATGTCATTTTGGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTTTCAATGCTTGGGTTTTTGCAGAATACCCAACAAATTCCTGGTCCTTTTCTTGTTGTTGTGCCTTTGTCAACACTAGCTAATTGGGCTAAAGAATTTAGAAAGTGGCTTCCCGGCATGAATATAATAGTATATGTTGGCACCCGGGCTAGTCGAGAGGTATGTCAGCAATACGAATTTTACAATGAAAAGAAAGTAGGCCGGCCCATAAAATTCAATGCACTTTTGACTACTTATGAAGTAGTCTTGAAGGATAAAGCTGTCCTCTCCAAGATTAAGTGGATTTACTTAATGGTGGATGAAGCACATCGACTGAAAAATAGTGAGGCACAGCTCTACACAGCTCTTTTGGAATTTAGCACGAAGAACAAATTGCTTATTACTGGTACTCCACTACAGAATAGTGTCGAAGAGCTTTGGGCTCTGCTCCACTTTCTTGATCCTGGCAAGTTTAAGAATAAGGATGAGTTCGTTGAAAACTACAAGAACCTTAGCTCATTCAATGAATCTGAGCTCGCCAACCTGCATTTAGAATTGAGACCCCATATTCTACGACGAGTGATTAAAGATGTTGAAAAGTCGTTGCCTCCAAAAATCGAGCGTATACTAAGAGTTGAGATGTCCCCTCTTCAGAAACAGTACTACAAATGGATACTGGAGCGCAACTTCCATGATTTAAATAAAGGGGTGCGGGGTAATCAGGTTTCACTTTTAAACATCGTGGTGGAGTTGAAGAAATGCTGCAATCATCCTTTCTTATTTGAAAGTGCAGACCATGGATATGGGGGTGACATAAACGATAACTCTAAGCTGGATAAAATTATTCTAAGTAGCGGAAAGCTAGTTATTCTAGACAAGCTACTGGTTAGACTGCGTGAGACTAAGCATCGTGTGCTTATCTTTTCTCAGATGGTAAGAATGTTAGATATCCTGGCAGAATACCTGTCTCTTAGAGGTTTCCAGTTCCAGAGACTGGATGGTAGTACTAAGGCAGAACTGCGTCAGCAAGCAATGGATCATTTTAACGCACCTGCTAGTGACGACTTTTGCTTTCTTCTTTCGACCCGAGCTGGTGGACTGGGTATCAATCTGGCTACTGCTGATACAGTCGTTATATTTGACTCTGATTGGAATCCACAAAATGACCTGCAGGCCATGAGTCGAGCGCATAGAATTGGGCAACAAGAGGTCGTGAACATTTATAGATTTGTCACTAGCAAAAGTGTTGAAGAAGAAATCCTGGAGCGCGCCAAAAGAAAAATGGTTCTTGATCATTTGGTTATTCAAAAACTGAATGCGGAGGGTAGGCTGGAGAAGCGAGAAACTAAAAAAGGAAGTAATTTTGACAAGAATGAGCTTTCTGCAATATTGAGATTTGGAGCGGAAGAACTTTTTAAAGAGGATAAAAATGATGAAGAAAGCAAAAAGCGGCTGTTGAGTATGGATATTGATGAAATCTTAGAGAGGGCAGAGCAAGTTGAGGAAAAGCATACTGATGAAACAGAACACGAACTGTTGGGTGCTTTTAAGGTTGCCAACTTTTGCAACGCTGAAGATGATGGGTCCTTCTGGAGTCGCTGGATAAAACCTGATTCTGTGGTTACGGCCGAAGAAGCTCTTGCACCACGGGCTGCTAGGAATACAAAGAGTTATGTGGATCCTAGCCATCCTGACAGGACTAGCAAAAGAAAAAAGAAAGGATCTGAGCCTCCGGAGCATACAGAGAGAAGTCAAAAGCGCAGAAAAACGGAATATTTTGTTCCTTCAACTCCACTATTAGAGGGGACTTCAGCTCAAGTTAGAGGCTGGTCTTATGGAAATCTTCCTAAGAGAGATGCGCAACGATTTTATCGAACTGTCATGAAGTTTGGGAACCATAATCAAATGGCATGTATTGCAGAAGAGGTGGGTGGTGTTGTTGAAGCAGCCCCGGAGGAAGCACAAGTTGAGCTATTTGATGCTTTAATTGATGGTTGTAAGGAATCTGTTGAAACAGGAAATTTTGAACCAAAGGGTCCTGTGTTGGATTTCTTTGGTGTGCCAGTTAAAGCAAACGAACTATTAAAACGTGTGCAAGGACTGCAGCTCCTATCAAAGCGTATTAGTCGATATAACGATCCAATTTCACAATTCCGGGTGTTGTCATACCTTAAACCTTCAAATTGGTCCAAGGGTTGCGGTTGGAATCAGATCGATGATGCGAGATTGCTTCTGGGAATTCTTTATCATGGTTTTGGGAATTGGGAAAAGATACGATTAGATGAGAGCCTTGGACTTACAAAGAAGATTGCTCCGGTTGAACTTCAACACCATGAGACTTTTCTACCTCGTGCTCCAAACTTAAAGGAGCGTGCCACTGCACTTCTGGAAATGGAACTTGCTGCAGCAGGAGGGAAAAATACAAATGCCAAAGCATCCCGTAAAAATTCCAAAAAGGTCAAGGATAATCTTATTAATCAATTTAAAGCTCCTGCCAGAGACCGGAGAGGAAAATCTGGTCCTGCCAATGTAAGTTTATTATCAACAAAAGATGGACCTCGAAAAACCCAAAAAGCTGAGCCGTTGGTGAAGGAAGAAGGGGAAATGTCTGATGATGGGGAAGTTTACGAGCAGTTCAAGGAGCAGAAATGGATGGAATGGTGTGAAGATGTCTTGGCCGATGAAATCAAAACTCTTGGACGTCTACAAAGACTGCAAACCACAAGTGCCGATCTGCCAAAGGAGAAGGTACTTTTCAAAATCCGGAGATATTTGGAAATCCTTGGGCGAAGAATAGATGCAATTGTCTTAGAACATGAAGAAGATCTATACAAGCAAGATAGAATGACAATGAGATTGTGGAACTATGTTTCAACTTTCTCAAATTTGTCGGGGGATCGACTCAATCAAATCTACTCCAAATTGAAGCAGGAGAAAGAGGAAGAGGAAGGGGTCGGGCCATCGCACCTCAATGGTTCTAGGAACTTCCAGAGGCAACAAAAATTCAAAACAGCAGGGAACTCCCAAGGATCACAGCAGGTTCACAAGGGCATTGACACAGCAAAGTTTGAAGCGTGGAAACGAAGAAGAAGAACAGAAAACGATGTTCAGACTGAGCGACCAACGATAACAAACTCTAACTCGCTGGGAATACTCGGCCCTGGACCATTGGATAGAAGCCATAGGGCACGTCAAACCGGATTTCCCCCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo DUF4208 Helicase_C SLIDE SNF2_N

Protein Analysis

1724

Amino Acids

197.27

Weight (kDa)

5.5

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chromo PF00385 534 - 588 7.2e-15 Chromo (CHRromatin Organisation MOdifier) domain
ResIII PF04851 624 - 791 5.3e-10 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 628 - 912 1.5e-84 SNF2-related domain
DEAD PF00270 638 - 796 2.8e-07 DEAD/DEAH box helicase
HDA2-3 PF11496 863 - 1080 1.6e-11 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 940 - 1053 1.6e-26 Helicase conserved C-terminal domain
HTH_CHD1_Hrp3 PF23588 1367 - 1450 1.3e-23 ATP-dependent helicase CHD1-2/hrp3 HTH domain
CHD1-like_C PF13907 1533 - 1627 1.1e-13 Chromodomain-helicase-DNA-binding protein 1-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1397
AarI CACCTGC 1 cut(s) 3019
AatII GACGTC 1 cut(s) 4663
Acc16I TGCGCA 1 cut(s) 3819
Acc36I ACCTGC 4 cut(s) 2511, 3019, 3135, 4987
AccB1I GGYRCC 1 cut(s) 2120
AccB7I CCANNNNNTGG 2 cut(s) 303, 2953
AccBSI CCGCTC 2 cut(s) 67, 3362
AccI GTMKAC 3 cut(s) 985, 2584, 4663
AccII CGCG 2 cut(s) 1534, 3228
AccIII TCCGGA 3 cut(s) 936, 3691, 4722
AciI CCGC 7 cut(s) 67, 2671, 2814, 3278, 3362, 3409, 4158
AclI AACGTT 1 cut(s) 1439
AcoI YGGCCR 4 cut(s) 817, 1068, 3585, 4635
AcuI CTGAAG 6 cut(s) 777, 1310, 1716, 2594, 3552, 3753
AcyI GRCGYC 1 cut(s) 4660
AdeI CACNNNGTG 1 cut(s) 1877
AfeI AGCGCT 1 cut(s) 949
AfiI CCNNNNNNNGG 8 cut(s) 182, 303, 623, 709, 826, 915, 2953, 4461
AflIII ACRYGT 1 cut(s) 4048
AjiI CACGTC 1 cut(s) 5150
AjnI CCWGG 7 cut(s) 181, 1065, 2020, 2422, 2910, 3219, 5119
AjuI GAANNNNNNNTTGG 2 cut(s) 1944, 1976
AleI CACNNNNGTG 1 cut(s) 684
Alw21I GWGCWC 4 cut(s) 576, 1278, 2496, 4315
Alw26I GTCTC 8 cut(s) 203, 1174, 2512, 2852, 2931, 2944, 4289, 4452
Alw44I GTGCAC 1 cut(s) 572
AlwNI CAGNNNCTG 3 cut(s) 629, 1337, 2953
Ama87I CYCGRG 2 cut(s) 2124, 3045
Aor13HI TCCGGA 3 cut(s) 936, 3691, 4722
Aor51HI AGCGCT 1 cut(s) 949
ApaLI GTGCAC 1 cut(s) 572
ArsI GACNNNNNNTTYG 2 cut(s) 2008, 2040
AseI ATTAAT 1 cut(s) 4434
Asp700I GAANNNNTTC 1 cut(s) 1308
AspLEI GCGC 7 cut(s) 950, 2643, 3148, 3228, 3230, 3720, 3820
AsuC2I CCSGG 5 cut(s) 2094, 2125, 2126, 3911, 4115
AsuHPI GGTGA 5 cut(s) 87, 1313, 1658, 2780, 4558
AvaI CYCGRG 2 cut(s) 2124, 3045
AvaII GGWCC 8 cut(s) 1107, 2024, 3543, 3995, 4146, 4478, 4514, 5123
BaeGI GKGCMC 2 cut(s) 576, 5149
BaeI ACNNNNGTAYC 6 cut(s) 1646, 1679, 1920, 1953, 3075, 3108
BalI TGGCCA 2 cut(s) 819, 1070
BamHI GGATCC 1 cut(s) 3637
BanI GGYRCC 1 cut(s) 2120
BanII GRGCYC 3 cut(s) 777, 2404, 2496
BauI CACGAG 2 cut(s) 1761, 4308
BbsI GAAGAC 3 cut(s) 849, 1035, 1194
Bbv12I GWGCWC 4 cut(s) 576, 1278, 2496, 4315
BceAI ACGGC 2 cut(s) 3600, 4525
BciT130I CCWGG 7 cut(s) 183, 1067, 2022, 2424, 2912, 3221, 5121
BciVI GTATCC 1 cut(s) 2625
BclI TGATCA 1 cut(s) 3250
BcnI CCSGG 5 cut(s) 2094, 2125, 2126, 3911, 4115
BcoDI GTCTC 8 cut(s) 203, 1174, 2512, 2852, 2931, 2944, 4289, 4452
BfmI CTRYAG 5 cut(s) 682, 2375, 3128, 4061, 4362
BfoI RGCGCY 1 cut(s) 951
BfuAI ACCTGC 4 cut(s) 2511, 3019, 3135, 4987
BfuI GTATCC 1 cut(s) 2625
BglI GCCNNNNNGGC 1 cut(s) 1855
BglII AGATCT 1 cut(s) 4783
BlpI GCTNAGC 1 cut(s) 4536
BmcAI AGTACT 2 cut(s) 2621, 2965
Bme18I GGWCC 8 cut(s) 1107, 2024, 3543, 3995, 4146, 4478, 4514, 5123
BmeT110I CYCGRG 2 cut(s) 2124, 3045
BmgBI CACGTC 1 cut(s) 5150
BmiI GGNNCC 6 cut(s) 295, 2122, 3544, 3639, 3854, 3996
BmrI ACTGGG 1 cut(s) 3068
BmuI ACTGGG 1 cut(s) 3068
BpiI GAAGAC 3 cut(s) 849, 1035, 1194
BplI GAGNNNNNCTC 2 cut(s) 1016, 1048
BpmI CTGGAG 5 cut(s) 1910, 2657, 3242, 3311, 3571
Bpu10I CCTNAGC 1 cut(s) 2471
Bpu1102I GCTNAGC 1 cut(s) 4536
BpuEI CTTGAG 3 cut(s) 631, 1849, 3759
BpuMI CCSGG 5 cut(s) 2094, 2125, 2126, 3911, 4115
Bsa29I ATCGAT 1 cut(s) 4173
BsaAI YACGTR 1 cut(s) 1877
BsaBI GATNNNNATC 2 cut(s) 693, 3111
BsaHI GRCGYC 1 cut(s) 4660
BsaI GGTCTC 2 cut(s) 2512, 4452
BsaWI WCCGGW 8 cut(s) 365, 411, 936, 3691, 4273, 4461, 4722, 5156
BsaXI ACNNNNNCTCC 6 cut(s) 1499, 1529, 2353, 2383, 4050, 4080
Bsc4I CCNNNNNNNGG 8 cut(s) 182, 303, 623, 709, 826, 915, 2953, 4461
Bse118I RCCGGY 1 cut(s) 2181
Bse1I ACTGG 8 cut(s) 286, 2368, 2640, 2847, 2941, 2958, 3063, 4022
Bse3DI GCAATG 1 cut(s) 2997
Bse8I GATNNNNATC 2 cut(s) 693, 3111
BseAI TCCGGA 3 cut(s) 936, 3691, 4722
BseBI CCWGG 7 cut(s) 183, 1067, 2022, 2424, 2912, 3221, 5121
BseCI ATCGAT 1 cut(s) 4173
BseJI GATNNNNATC 2 cut(s) 693, 3111
BseLI CCNNNNNNNGG 8 cut(s) 182, 303, 623, 709, 826, 915, 2953, 4461
BseMI GCAATG 1 cut(s) 2997
BseMII CTCAG 9 cut(s) 840, 1035, 1356, 1842, 2481, 2900, 3675, 4527, 5064
BseNI ACTGG 8 cut(s) 286, 2368, 2640, 2847, 2941, 2958, 3063, 4022
BsePI GCGCGC 1 cut(s) 3226
BseRI GAGGAG 7 cut(s) 77, 473, 476, 749, 1262, 1520, 1553
BseSI GKGCMC 2 cut(s) 576, 5149
BseX3I CGGCCG 1 cut(s) 3585
BseYI CCCAGC 2 cut(s) 508, 5104
BsgI GTGCAG 2 cut(s) 2769, 4323
Bsh1236I CGCG 2 cut(s) 1534, 3228
Bsh1285I CGRYCG 1 cut(s) 3588
BshNI GGYRCC 1 cut(s) 2120
BshVI ATCGAT 1 cut(s) 4173
BsiEI CGRYCG 1 cut(s) 3588
BsiHKAI GWGCWC 4 cut(s) 576, 1278, 2496, 4315
BsiHKCI CYCGRG 2 cut(s) 2124, 3045
BslFI GGGAC 5 cut(s) 339, 491, 842, 2587, 3778
BslI CCNNNNNNNGG 8 cut(s) 182, 303, 623, 709, 826, 915, 2953, 4461
BsmAI GTCTC 8 cut(s) 203, 1174, 2512, 2852, 2931, 2944, 4289, 4452
BsmFI GGGAC 5 cut(s) 339, 491, 842, 2587, 3778
BsmI GAATGC 1 cut(s) 3280
Bso31I GGTCTC 2 cut(s) 2512, 4452
BsoBI CYCGRG 2 cut(s) 2124, 3045
Bsp1286I GDGCHC 7 cut(s) 576, 777, 1278, 2404, 2496, 4315, 5149
Bsp13I TCCGGA 3 cut(s) 936, 3691, 4722
Bsp1720I GCTNAGC 1 cut(s) 4536
Bsp19I CCATGG 1 cut(s) 2755
Bsp68I TCGCGA 1 cut(s) 1534
BspACI CCGC 7 cut(s) 67, 2671, 2814, 3278, 3362, 3409, 4158
BspCNI CTCAG 9 cut(s) 841, 1034, 1357, 1843, 2482, 2899, 3676, 4528, 5065
BspDI ATCGAT 1 cut(s) 4173
BspEI TCCGGA 3 cut(s) 936, 3691, 4722
BspFNI CGCG 2 cut(s) 1534, 3228
BspHI TCATGA 2 cut(s) 697, 3840
BspLI GGNNCC 6 cut(s) 295, 2122, 3544, 3639, 3854, 3996
BspMAI CTGCAG 3 cut(s) 3132, 4065, 4366
BspMI ACCTGC 4 cut(s) 2511, 3019, 3135, 4987
BspQI GCTCTTC 1 cut(s) 2385
BspT107I GGYRCC 1 cut(s) 2120
BspTNI GGTCTC 2 cut(s) 2512, 4452
BsrBI CCGCTC 2 cut(s) 67, 3362
BsrDI GCAATG 1 cut(s) 2997
BsrFI RCCGGY 1 cut(s) 2181
BsrI ACTGG 8 cut(s) 286, 2368, 2640, 2847, 2941, 2958, 3063, 4022
BssAI RCCGGY 1 cut(s) 2181
BssHII GCGCGC 1 cut(s) 3226
BssNAI GTATAC 1 cut(s) 2585
BssNI GRCGYC 1 cut(s) 4660
BssSI CACGAG 2 cut(s) 1761, 4308
BssT1I CCWWGG 7 cut(s) 820, 909, 2755, 4149, 4249, 4741, 4984
Bst1107I GTATAC 1 cut(s) 2585
Bst2BI CACGAG 2 cut(s) 1761, 4308
Bst2UI CCWGG 7 cut(s) 183, 1067, 2022, 2424, 2912, 3221, 5121
Bst6I CTCTTC 7 cut(s) 726, 1069, 1239, 2385, 2613, 3876, 4896
BstACI GRCGYC 1 cut(s) 4660
BstAPI GCANNNNNTGC 5 cut(s) 629, 1739, 2872, 3875, 4060
BstBAI YACGTR 1 cut(s) 1877
BstC8I GCNNGC 8 cut(s) 1825, 1919, 2183, 2496, 2988, 3132, 3228, 4332
BstDSI CCRYGG 2 cut(s) 2755, 3605
BstFNI CGCG 2 cut(s) 1534, 3228
BstH2I RGCGCY 1 cut(s) 951
BstHHI GCGC 7 cut(s) 950, 2643, 3148, 3228, 3230, 3720, 3820
BstMAI GTCTC 8 cut(s) 203, 1174, 2512, 2852, 2931, 2944, 4289, 4452
BstMCI CGRYCG 1 cut(s) 3588
BstNI CCWGG 7 cut(s) 183, 1067, 2022, 2424, 2912, 3221, 5121
BstNSI RCATGY 1 cut(s) 3873
BstSFI CTRYAG 5 cut(s) 682, 2375, 3128, 4061, 4362
BstSLI GKGCMC 2 cut(s) 576, 5149
BstUI CGCG 2 cut(s) 1534, 3228
BstV2I GAAGAC 3 cut(s) 849, 1035, 1194
BstX2I RGATCY 5 cut(s) 626, 1573, 3637, 3680, 4783
BstXI CCANNNNNNTGG 1 cut(s) 2762
BstYI RGATCY 5 cut(s) 626, 1573, 3637, 3680, 4783
BstZ17I GTATAC 1 cut(s) 2585
BstZI CGGCCG 1 cut(s) 3585
Bsu15I ATCGAT 1 cut(s) 4173
BsuI GTATCC 1 cut(s) 2625
BsuTUI ATCGAT 1 cut(s) 4173
BtgI CCRYGG 2 cut(s) 2755, 3605
BtgZI GCGATG 1 cut(s) 4905
BtrI CACGTC 1 cut(s) 5150
BtsI GCAGTG 3 cut(s) 611, 1785, 4335
BtsIMutI CAGTG 5 cut(s) 611, 1198, 1436, 1785, 4335
BtuMI TCGCGA 1 cut(s) 1534
BveI ACCTGC 4 cut(s) 2511, 3019, 3135, 4987
Cac8I GCNNGC 8 cut(s) 1825, 1919, 2183, 2496, 2988, 3132, 3228, 4332
CaiI CAGNNNCTG 3 cut(s) 629, 1337, 2953
CciI TCATGA 2 cut(s) 697, 3840
CfoI GCGC 7 cut(s) 950, 2643, 3148, 3228, 3230, 3720, 3820
Cfr10I RCCGGY 1 cut(s) 2181
Cfr9I CCCGGG 1 cut(s) 2124
ClaI ATCGAT 1 cut(s) 4173
CseI GACGC 1 cut(s) 2969
DraI TTTAAA 4 cut(s) 2658, 2694, 3376, 4444
DraIII CACNNNGTG 1 cut(s) 1877
EaeI YGGCCR 4 cut(s) 817, 1068, 3585, 4635
EagI CGGCCG 1 cut(s) 3585
Eam1104I CTCTTC 7 cut(s) 726, 1069, 1239, 2385, 2613, 3876, 4896
EarI CTCTTC 7 cut(s) 726, 1069, 1239, 2385, 2613, 3876, 4896
Ecl136II GAGCTC 1 cut(s) 2494
EclXI CGGCCG 1 cut(s) 3585
Eco130I CCWWGG 7 cut(s) 820, 909, 2755, 4149, 4249, 4741, 4984
Eco24I GRGCYC 3 cut(s) 777, 2404, 2496
Eco31I GGTCTC 2 cut(s) 2512, 4452
Eco32I GATATC 1 cut(s) 2908
Eco47I GGWCC 8 cut(s) 1107, 2024, 3543, 3995, 4146, 4478, 4514, 5123
Eco47III AGCGCT 1 cut(s) 949
Eco52I CGGCCG 1 cut(s) 3585
Eco53kI GAGCTC 1 cut(s) 2494
Eco57I CTGAAG 6 cut(s) 777, 1310, 1716, 2594, 3552, 3753
Eco88I CYCGRG 2 cut(s) 2124, 3045
EcoICRI GAGCTC 1 cut(s) 2494
EcoO109I RGGNCCY 2 cut(s) 3543, 3995
EcoRI GAATTC 2 cut(s) 1388, 4197
EcoRII CCWGG 7 cut(s) 181, 1065, 2020, 2422, 2910, 3219, 5119
EcoRV GATATC 1 cut(s) 2908
EcoT14I CCWWGG 7 cut(s) 820, 909, 2755, 4149, 4249, 4741, 4984
EcoT38I GRGCYC 3 cut(s) 777, 2404, 2496
ErhI CCWWGG 7 cut(s) 820, 909, 2755, 4149, 4249, 4741, 4984
FalI AAGNNNNNCTT 2 cut(s) 3582, 3614
FaqI GGGAC 5 cut(s) 339, 491, 842, 2587, 3778
FauI CCCGC 1 cut(s) 2664
FbaI TGATCA 1 cut(s) 3250
FblI GTMKAC 3 cut(s) 985, 2584, 4663
FriOI GRGCYC 3 cut(s) 777, 2404, 2496
FseI GGCCGGCC 1 cut(s) 2185
FspI TGCGCA 1 cut(s) 3819
GlaI GCGC 7 cut(s) 949, 2642, 3147, 3227, 3229, 3719, 3819
GsaI CCCAGC 2 cut(s) 512, 5108
GsuI CTGGAG 5 cut(s) 1910, 2657, 3242, 3311, 3571
HaeII RGCGCY 1 cut(s) 951
HgaI GACGC 1 cut(s) 2969
HhaI GCGC 7 cut(s) 950, 2643, 3148, 3228, 3230, 3720, 3820
Hin1I GRCGYC 1 cut(s) 4660
Hin6I GCGC 7 cut(s) 948, 2641, 3146, 3226, 3228, 3718, 3818
HinP1I GCGC 7 cut(s) 948, 2641, 3146, 3226, 3228, 3718, 3818
HincII GTYRAC 4 cut(s) 986, 1552, 1912, 2052
HindII GTYRAC 4 cut(s) 986, 1552, 1912, 2052
HindIII AAGCTT 1 cut(s) 1835
HphI GGTGA 5 cut(s) 87, 1313, 1658, 2780, 4558
Hpy99I CGWCG 1 cut(s) 2538
HpyCH4IV ACGT 7 cut(s) 156, 831, 1439, 1876, 4048, 4660, 5149
HpySE526I ACGT 7 cut(s) 156, 831, 1439, 1876, 4048, 4660, 5149
Hsp92I GRCGYC 1 cut(s) 4660
HspAI GCGC 7 cut(s) 948, 2641, 3146, 3226, 3228, 3718, 3818
Kpn2I TCCGGA 3 cut(s) 936, 3691, 4722
KroI GCCGGC 1 cut(s) 2181
KroNI GCCGGC 1 cut(s) 2183
Ksp22I TGATCA 1 cut(s) 3250
LguI GCTCTTC 1 cut(s) 2385
MaeII ACGT 7 cut(s) 156, 831, 1439, 1876, 4048, 4660, 5149
MbiI CCGCTC 2 cut(s) 67, 3362
MfeI CAATTG 2 cut(s) 1773, 4761
MflI RGATCY 5 cut(s) 626, 1573, 3637, 3680, 4783
MhlI GDGCHC 7 cut(s) 576, 777, 1278, 2404, 2496, 4315, 5149
MlsI TGGCCA 2 cut(s) 819, 1070
MluNI TGGCCA 2 cut(s) 819, 1070
MlyI GAGTC 7 cut(s) 948, 1013, 1025, 3095, 3148, 3562, 4854
MmeI TCCRAC 3 cut(s) 1114, 3984, 4142
Mox20I TGGCCA 2 cut(s) 819, 1070
MroI TCCGGA 3 cut(s) 936, 3691, 4722
MroNI GCCGGC 1 cut(s) 2181
MroXI GAANNNNTTC 1 cut(s) 1308
MscI TGGCCA 2 cut(s) 819, 1070
MslI CAYNNNNRTG 8 cut(s) 149, 405, 489, 684, 2702, 2760, 3474, 4929
Msp20I TGGCCA 2 cut(s) 819, 1070
MspA1I CMGCKG 3 cut(s) 1288, 1888, 1917
MunI CAATTG 2 cut(s) 1773, 4761
Mva1269I GAATGC 1 cut(s) 3280
MvaI CCWGG 7 cut(s) 183, 1067, 2022, 2424, 2912, 3221, 5121
MvnI CGCG 2 cut(s) 1534, 3228
NaeI GCCGGC 1 cut(s) 2183
NciI CCSGG 5 cut(s) 2094, 2125, 2126, 3911, 4115
NcoI CCATGG 1 cut(s) 2755
NgoMIV GCCGGC 1 cut(s) 2181
NlaIV GGNNCC 6 cut(s) 295, 2122, 3544, 3639, 3854, 3996
NmeAIII GCCGAG 1 cut(s) 5094
NmuCI GTSAC 7 cut(s) 36, 170, 1498, 1877, 2768, 3017, 3190
NruI TCGCGA 1 cut(s) 1534
NsbI TGCGCA 1 cut(s) 3819
NspI RCATGY 1 cut(s) 3873
OliI CACNNNNGTG 1 cut(s) 684
PagI TCATGA 2 cut(s) 697, 3840
PaqCI CACCTGC 1 cut(s) 3019
PauI GCGCGC 1 cut(s) 3226
PciSI GCTCTTC 1 cut(s) 2385
PcsI WCGNNNNNNNCGW 1 cut(s) 3829
PctI GAATGC 1 cut(s) 3280
PdiI GCCGGC 1 cut(s) 2183
PdmI GAANNNNTTC 1 cut(s) 1308
PfeI GAWTC 9 cut(s) 242, 356, 428, 1467, 2486, 3112, 3572, 3962, 4165
PflMI CCANNNNNTGG 2 cut(s) 303, 2953
PfoI TCCNGGA 1 cut(s) 3219
PleI GAGTC 7 cut(s) 948, 1013, 1025, 3095, 3147, 3561, 4854
PpsI GAGTC 7 cut(s) 948, 1013, 1025, 3095, 3147, 3561, 4854
Ppu21I YACGTR 1 cut(s) 1877
PpuMI RGGWCCY 2 cut(s) 3543, 3995
PshBI ATTAAT 1 cut(s) 4434
PsiI TTATAA 1 cut(s) 1397
Psp124BI GAGCTC 1 cut(s) 2496
Psp1406I AACGTT 1 cut(s) 1439
Psp5II RGGWCCY 2 cut(s) 3543, 3995
Psp6I CCWGG 7 cut(s) 181, 1065, 2020, 2422, 2910, 3219, 5119
PspFI CCCAGC 2 cut(s) 508, 5104
PspGI CCWGG 7 cut(s) 181, 1065, 2020, 2422, 2910, 3219, 5119
PspN4I GGNNCC 6 cut(s) 295, 2122, 3544, 3639, 3854, 3996
PspPPI RGGWCCY 2 cut(s) 3543, 3995
PsrI GAACNNNNNNTAC 2 cut(s) 277, 309
PstI CTGCAG 3 cut(s) 3132, 4065, 4366
PstNI CAGNNNCTG 3 cut(s) 629, 1337, 2953
PsuI RGATCY 5 cut(s) 626, 1573, 3637, 3680, 4783
PteI GCGCGC 1 cut(s) 3226
PvuII CAGCTG 3 cut(s) 1288, 1888, 1917
RigI GGCCGGCC 1 cut(s) 2185
RruI TCGCGA 1 cut(s) 1534
RseI CAYNNNNRTG 8 cut(s) 149, 405, 489, 684, 2702, 2760, 3474, 4929
SacI GAGCTC 1 cut(s) 2496
SalI GTCGAC 1 cut(s) 984
SapI GCTCTTC 1 cut(s) 2385
SbfI CCTGCAGG 1 cut(s) 3132
ScaI AGTACT 2 cut(s) 2621, 2965
SchI GAGTC 7 cut(s) 948, 1013, 1025, 3095, 3148, 3562, 4854
SdaI CCTGCAGG 1 cut(s) 3132
SduI GDGCHC 7 cut(s) 576, 777, 1278, 2404, 2496, 4315, 5149
SfcI CTRYAG 5 cut(s) 682, 2375, 3128, 4061, 4362
SinI GGWCC 8 cut(s) 1107, 2024, 3543, 3995, 4146, 4478, 4514, 5123
SmaI CCCGGG 1 cut(s) 2126
SmiI ATTTAAAT 1 cut(s) 2658
SmiMI CAYNNNNRTG 8 cut(s) 149, 405, 489, 684, 2702, 2760, 3474, 4929
SmlI CTYRAG 3 cut(s) 646, 1828, 3774
SmoI CTYRAG 3 cut(s) 646, 1828, 3774
Sse8387I CCTGCAGG 1 cut(s) 3132
SsiI CCGC 7 cut(s) 67, 2671, 2814, 3278, 3362, 3409, 4158
SspI AATATT 3 cut(s) 536, 3348, 3734
SstI GAGCTC 1 cut(s) 2496
StyI CCWWGG 7 cut(s) 820, 909, 2755, 4149, 4249, 4741, 4984
SwaI ATTTAAAT 1 cut(s) 2658
TaiI ACGT 7 cut(s) 159, 834, 1442, 1879, 4051, 4663, 5152
TatI WGTACW 3 cut(s) 1752, 2619, 2963
TauI GCSGC 2 cut(s) 70, 3412
TfiI GAWTC 9 cut(s) 242, 356, 428, 1467, 2486, 3112, 3572, 3962, 4165
TscAI CASTG 5 cut(s) 618, 1198, 1436, 1785, 4342
TseFI GTSAC 7 cut(s) 36, 170, 1498, 1877, 2768, 3017, 3190
Tsp45I GTSAC 7 cut(s) 36, 170, 1498, 1877, 2768, 3017, 3190
TspGWI ACGGA 3 cut(s) 909, 1517, 3743
TspMI CCCGGG 1 cut(s) 2124
TspRI CASTG 5 cut(s) 618, 1198, 1436, 1785, 4342
Van91I CCANNNNNTGG 2 cut(s) 303, 2953
VneI GTGCAC 1 cut(s) 572
VpaK11BI GGWCC 8 cut(s) 1107, 2024, 3543, 3995, 4146, 4478, 4514, 5123
VspI ATTAAT 1 cut(s) 4434
XbaI TCTAGA 2 cut(s) 605, 2830
XceI RCATGY 1 cut(s) 3873
XcmI CCANNNNNNNNNTGG 5 cut(s) 1460, 2018, 2954, 3238, 4342
XmaI CCCGGG 1 cut(s) 2124
XmiI GTMKAC 3 cut(s) 985, 2584, 4663
XmnI GAANNNNTTC 1 cut(s) 1308
ZraI GACGTC 1 cut(s) 4661
ZrmI AGTACT 2 cut(s) 2621, 2965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.