chromodomain-helicase-DNA-binding protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G13370 AT2G13370 AT2G13370 |
| fragaria_vesca | FvH4_3g28110 FvH4_3g28110 FvH4_3g28110 FvH4_3g28110 |
| malus_domestica | MD03G1168800.v1.1 MD11G1194800.v1.1 |
| prunus_persica | Prupe.4G258700_v2.0.a1 Prupe.4G258700_v2.0.a1 Prupe.4G258700_v2.0.a1 Prupe.4G258700_v2.0.a1 |
| pyrus_communis | pycom03g12510 pycom11g16330 |
| rosa_chinensis | RchiOBHm_Chr5g0050791 |
| rosa_laevigata | RLG00000034733 RLG00000034734 RLG00000034735 |
| rosa_roxburghii | Rroxscaffold_1G00029940 |
| rosa_samantha | Rh5BG345500 Rh5CG373300 Rh5DG358700 |
| rosa_wichuraiana | Rw5G031700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2198 |
| AarI | CACCTGC | 1 cut(s) | 2885 |
| Acc36I | ACCTGC | 2 cut(s) | 2885, 5024 |
| Acc65I | GGTACC | 1 cut(s) | 4934 |
| AccB1I | GGYRCC | 2 cut(s) | 3728, 4934 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 2836, 3593, 4732 |
| AccI | GTMKAC | 2 cut(s) | 1666, 4345 |
| AccII | CGCG | 1 cut(s) | 5026 |
| AclWI | GGATC | 7 cut(s) | 250, 590, 1166, 1179, 1644, 3926, 4943 |
| AcoI | YGGCCR | 1 cut(s) | 943 |
| AcuI | CTGAAG | 8 cut(s) | 243, 267, 1161, 1554, 2432, 2957, 3771, 3881 |
| AcvI | CACGTG | 1 cut(s) | 1373 |
| AdeI | CACNNNGTG | 1 cut(s) | 185 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 110, 111, 626, 1072, 1356, 2836, 3593, 4732, 4903 |
| AjnI | CCWGG | 4 cut(s) | 1349, 2854, 3903, 4725 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1782, 1814, 2955, 2987 |
| Alw21I | GWGCWC | 2 cut(s) | 1116, 4150 |
| Alw26I | GTCTC | 4 cut(s) | 1012, 2445, 4684, 4779 |
| AlwI | GGATC | 7 cut(s) | 250, 590, 1166, 1179, 1644, 3926, 4943 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3904 |
| Ama87I | CYCGRG | 2 cut(s) | 1676, 2889 |
| ApaI | GGGCCC | 1 cut(s) | 3834 |
| ApeKI | GCWGC | 8 cut(s) | 65, 557, 1607, 2655, 3737, 3740, 3789, 4196 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2421, 3060 |
| Asp718I | GGTACC | 1 cut(s) | 4934 |
| AspLEI | GCGC | 4 cut(s) | 1647, 2854, 2992, 4647 |
| AsuC2I | CCSGG | 2 cut(s) | 4684, 4939 |
| AsuII | TTCGAA | 2 cut(s) | 2371, 4555 |
| AvaI | CYCGRG | 2 cut(s) | 1676, 2889 |
| AvaII | GGWCC | 3 cut(s) | 223, 3820, 4979 |
| AxyI | CCTNAGG | 1 cut(s) | 3534 |
| BaeGI | GKGCMC | 1 cut(s) | 3834 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 75, 108, 1758, 1791, 3884, 3917 |
| BamHI | GGATCC | 1 cut(s) | 1171 |
| BanI | GGYRCC | 2 cut(s) | 3728, 4934 |
| BanII | GRGCYC | 2 cut(s) | 2242, 3834 |
| BauI | CACGAG | 4 cut(s) | 1599, 1962, 3450, 3666 |
| BbrPI | CACGTG | 1 cut(s) | 1373 |
| BbsI | GAAGAC | 4 cut(s) | 1703, 3231, 3618, 4233 |
| Bbv12I | GWGCWC | 2 cut(s) | 1116, 4150 |
| BbvCI | CCTCAGC | 3 cut(s) | 862, 3207, 3580 |
| BbvI | GCAGC | 8 cut(s) | 77, 544, 1594, 2667, 3749, 3752, 3776, 4208 |
| BceAI | ACGGC | 3 cut(s) | 958, 3716, 4774 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 3031, 3065, 3920, 3954 |
| BciT130I | CCWGG | 4 cut(s) | 1351, 2856, 3905, 4727 |
| BciVI | GTATCC | 2 cut(s) | 2920, 3433 |
| BcnI | CCSGG | 2 cut(s) | 4684, 4939 |
| BcoDI | GTCTC | 4 cut(s) | 1012, 2445, 4684, 4779 |
| BfaI | CTAG | 7 cut(s) | 42, 447, 501, 816, 990, 1505, 4317 |
| BfmI | CTRYAG | 4 cut(s) | 345, 412, 3025, 3318 |
| BfuAI | ACCTGC | 2 cut(s) | 2885, 5024 |
| BfuI | GTATCC | 2 cut(s) | 2920, 3433 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 4779 |
| BglII | AGATCT | 2 cut(s) | 547, 1417 |
| BmcAI | AGTACT | 1 cut(s) | 2459 |
| Bme1390I | CCNGG | 6 cut(s) | 1351, 2856, 3905, 4684, 4727, 4939 |
| Bme18I | GGWCC | 3 cut(s) | 223, 3820, 4979 |
| BmeT110I | CYCGRG | 2 cut(s) | 1676, 2889 |
| BmrFI | CCNGG | 6 cut(s) | 1351, 2856, 3905, 4684, 4727, 4939 |
| BmrI | ACTGGG | 1 cut(s) | 1912 |
| BmuI | ACTGGG | 1 cut(s) | 1912 |
| BpiI | GAAGAC | 4 cut(s) | 1703, 3231, 3618, 4233 |
| BpmI | CTGGAG | 3 cut(s) | 1625, 3086, 4092 |
| Bpu10I | CCTNAGC | 3 cut(s) | 862, 3207, 3580 |
| Bpu14I | TTCGAA | 2 cut(s) | 2371, 4555 |
| BpuEI | CTTGAG | 5 cut(s) | 1748, 2596, 3280, 3594, 3950 |
| BpuMI | CCSGG | 2 cut(s) | 4684, 4939 |
| Bsa29I | ATCGAT | 2 cut(s) | 404, 1584 |
| BsaAI | YACGTR | 2 cut(s) | 1373, 5066 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2955 |
| BsaI | GGTCTC | 1 cut(s) | 1012 |
| BsaJI | CCNNGG | 5 cut(s) | 2593, 2902, 4042, 4201, 4683 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 2191, 2221, 2753, 2783, 4604, 4634 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 110, 111, 626, 1072, 1356, 2836, 3593, 4732, 4903 |
| Bse118I | RCCGGY | 1 cut(s) | 2019 |
| Bse1I | ACTGG | 6 cut(s) | 1907, 2206, 2760, 3376, 4109, 4312 |
| Bse21I | CCTNAGG | 1 cut(s) | 3534 |
| Bse3DI | GCAATG | 5 cut(s) | 1617, 2841, 2985, 3653, 3936 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2955 |
| BseBI | CCWGG | 4 cut(s) | 1351, 2856, 3905, 4727 |
| BseCI | ATCGAT | 2 cut(s) | 404, 1584 |
| BseDI | CCNNGG | 5 cut(s) | 2593, 2902, 4042, 4201, 4683 |
| BseJI | GATNNNNATC | 1 cut(s) | 2955 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 110, 111, 626, 1072, 1356, 2836, 3593, 4732, 4903 |
| BseMI | GCAATG | 5 cut(s) | 1617, 2841, 2985, 3653, 3936 |
| BseNI | ACTGG | 6 cut(s) | 1907, 2206, 2760, 3376, 4109, 4312 |
| BseSI | GKGCMC | 1 cut(s) | 3834 |
| BseX3I | CGGCCG | 1 cut(s) | 943 |
| BseXI | GCAGC | 8 cut(s) | 77, 544, 1594, 2667, 3749, 3752, 3776, 4208 |
| BsgI | GTGCAG | 4 cut(s) | 29, 633, 3775, 4995 |
| Bsh1236I | CGCG | 1 cut(s) | 5026 |
| Bsh1285I | CGRYCG | 1 cut(s) | 946 |
| BshNI | GGYRCC | 2 cut(s) | 3728, 4934 |
| BshVI | ATCGAT | 2 cut(s) | 404, 1584 |
| BsiEI | CGRYCG | 1 cut(s) | 946 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1116, 4150 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1676, 2889 |
| BsiSI | CCGG | 4 cut(s) | 1688, 2020, 4683, 4939 |
| BslFI | GGGAC | 6 cut(s) | 333, 1048, 1237, 2621, 3172, 3839 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 110, 111, 626, 1072, 1356, 2836, 3593, 4732, 4903 |
| BsmAI | GTCTC | 4 cut(s) | 1012, 2445, 4684, 4779 |
| BsmFI | GGGAC | 6 cut(s) | 333, 1048, 1237, 2621, 3172, 3839 |
| BsmI | GAATGC | 2 cut(s) | 1849, 4219 |
| Bso31I | GGTCTC | 1 cut(s) | 1012 |
| BsoBI | CYCGRG | 2 cut(s) | 1676, 2889 |
| Bsp119I | TTCGAA | 2 cut(s) | 2371, 4555 |
| Bsp120I | GGGCCC | 1 cut(s) | 3830 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1116, 2242, 3834, 4150 |
| Bsp1407I | TGTACA | 3 cut(s) | 922, 1618, 2154 |
| Bsp19I | CCATGG | 2 cut(s) | 2593, 4042 |
| BspDI | ATCGAT | 2 cut(s) | 404, 1584 |
| BspFNI | CGCG | 1 cut(s) | 5026 |
| BspHI | TCATGA | 2 cut(s) | 1390, 4834 |
| BspMAI | CTGCAG | 2 cut(s) | 349, 3322 |
| BspMI | ACCTGC | 2 cut(s) | 2885, 5024 |
| BspPI | GGATC | 7 cut(s) | 250, 590, 1166, 1179, 1644, 3926, 4943 |
| BspT104I | TTCGAA | 2 cut(s) | 2371, 4555 |
| BspT107I | GGYRCC | 2 cut(s) | 3728, 4934 |
| BspTNI | GGTCTC | 1 cut(s) | 1012 |
| BsrDI | GCAATG | 5 cut(s) | 1617, 2841, 2985, 3653, 3936 |
| BsrFI | RCCGGY | 1 cut(s) | 2019 |
| BsrGI | TGTACA | 3 cut(s) | 922, 1618, 2154 |
| BsrI | ACTGG | 6 cut(s) | 1907, 2206, 2760, 3376, 4109, 4312 |
| BssAI | RCCGGY | 1 cut(s) | 2019 |
| BssECI | CCNNGG | 5 cut(s) | 2593, 2902, 4042, 4201, 4683 |
| BssSI | CACGAG | 4 cut(s) | 1599, 1962, 3450, 3666 |
| BssT1I | CCWWGG | 4 cut(s) | 2593, 2902, 4042, 4201 |
| Bst2BI | CACGAG | 4 cut(s) | 1599, 1962, 3450, 3666 |
| Bst2UI | CCWGG | 4 cut(s) | 1351, 2856, 3905, 4727 |
| Bst6I | CTCTTC | 9 cut(s) | 112, 570, 823, 1080, 2368, 2451, 3234, 3300, 4452 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1577 |
| BstAUI | TGTACA | 3 cut(s) | 922, 1618, 2154 |
| BstBAI | YACGTR | 2 cut(s) | 1373, 5066 |
| BstBI | TTCGAA | 2 cut(s) | 2371, 4555 |
| BstC8I | GCNNGC | 7 cut(s) | 302, 1969, 2021, 2334, 4282, 4741, 5031 |
| BstDSI | CCRYGG | 2 cut(s) | 2593, 4042 |
| BstFNI | CGCG | 1 cut(s) | 5026 |
| BstHHI | GCGC | 4 cut(s) | 1647, 2854, 2992, 4647 |
| BstMAI | GTCTC | 4 cut(s) | 1012, 2445, 4684, 4779 |
| BstMCI | CGRYCG | 1 cut(s) | 946 |
| BstNI | CCWGG | 4 cut(s) | 1351, 2856, 3905, 4727 |
| BstSCI | CCNGG | 6 cut(s) | 1349, 2854, 3903, 4682, 4725, 4937 |
| BstSFI | CTRYAG | 4 cut(s) | 345, 412, 3025, 3318 |
| BstSLI | GKGCMC | 1 cut(s) | 3834 |
| BstUI | CGCG | 1 cut(s) | 5026 |
| BstV1I | GCAGC | 8 cut(s) | 77, 544, 1594, 2667, 3749, 3752, 3776, 4208 |
| BstV2I | GAAGAC | 4 cut(s) | 1703, 3231, 3618, 4233 |
| BstX2I | RGATCY | 5 cut(s) | 242, 547, 1171, 1417, 1636 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2600, 4049 |
| BstYI | RGATCY | 5 cut(s) | 242, 547, 1171, 1417, 1636 |
| BstZI | CGGCCG | 1 cut(s) | 943 |
| Bsu15I | ATCGAT | 2 cut(s) | 404, 1584 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3534 |
| BsuI | GTATCC | 2 cut(s) | 2920, 3433 |
| BsuTUI | ATCGAT | 2 cut(s) | 404, 1584 |
| BtgI | CCRYGG | 2 cut(s) | 2593, 4042 |
| BtgZI | GCGATG | 1 cut(s) | 1047 |
| BtsI | GCAGTG | 3 cut(s) | 645, 3807, 4291 |
| BveI | ACCTGC | 2 cut(s) | 2885, 5024 |
| Cac8I | GCNNGC | 7 cut(s) | 302, 1969, 2021, 2334, 4282, 4741, 5031 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3904 |
| CciI | TCATGA | 2 cut(s) | 1390, 4834 |
| CfoI | GCGC | 4 cut(s) | 1647, 2854, 2992, 4647 |
| Cfr10I | RCCGGY | 1 cut(s) | 2019 |
| ClaI | ATCGAT | 2 cut(s) | 404, 1584 |
| CseI | GACGC | 1 cut(s) | 5032 |
| DraI | TTTAAA | 3 cut(s) | 901, 1320, 2067 |
| DraIII | CACNNNGTG | 1 cut(s) | 185 |
| EaeI | YGGCCR | 1 cut(s) | 943 |
| EagI | CGGCCG | 1 cut(s) | 943 |
| Eam1104I | CTCTTC | 9 cut(s) | 112, 570, 823, 1080, 2368, 2451, 3234, 3300, 4452 |
| EarI | CTCTTC | 9 cut(s) | 112, 570, 823, 1080, 2368, 2451, 3234, 3300, 4452 |
| EciI | GGCGGA | 2 cut(s) | 2774, 3612 |
| EclXI | CGGCCG | 1 cut(s) | 943 |
| Eco130I | CCWWGG | 4 cut(s) | 2593, 2902, 4042, 4201 |
| Eco147I | AGGCCT | 2 cut(s) | 2359, 5014 |
| Eco24I | GRGCYC | 2 cut(s) | 2242, 3834 |
| Eco31I | GGTCTC | 1 cut(s) | 1012 |
| Eco47I | GGWCC | 3 cut(s) | 223, 3820, 4979 |
| Eco52I | CGGCCG | 1 cut(s) | 943 |
| Eco57I | CTGAAG | 8 cut(s) | 243, 267, 1161, 1554, 2432, 2957, 3771, 3881 |
| Eco72I | CACGTG | 1 cut(s) | 1373 |
| Eco81I | CCTNAGG | 1 cut(s) | 3534 |
| Eco88I | CYCGRG | 2 cut(s) | 1676, 2889 |
| EcoO109I | RGGNCCY | 3 cut(s) | 3830, 3831, 4906 |
| EcoRI | GAATTC | 1 cut(s) | 2421 |
| EcoRII | CCWGG | 4 cut(s) | 1349, 2854, 3903, 4725 |
| EcoT14I | CCWWGG | 4 cut(s) | 2593, 2902, 4042, 4201 |
| EcoT22I | ATGCAT | 2 cut(s) | 3655, 3778 |
| EcoT38I | GRGCYC | 2 cut(s) | 2242, 3834 |
| ErhI | CCWWGG | 4 cut(s) | 2593, 2902, 4042, 4201 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 3426, 3458, 3818, 3850 |
| FaqI | GGGAC | 6 cut(s) | 333, 1048, 1237, 2621, 3172, 3839 |
| FauI | CCCGC | 1 cut(s) | 938 |
| FauNDI | CATATG | 3 cut(s) | 1012, 2053, 2346 |
| FblI | GTMKAC | 2 cut(s) | 1666, 4345 |
| FriOI | GRGCYC | 2 cut(s) | 2242, 3834 |
| FspBI | CTAG | 7 cut(s) | 42, 447, 501, 816, 990, 1505, 4317 |
| GlaI | GCGC | 4 cut(s) | 1646, 2853, 2991, 4646 |
| GsuI | CTGGAG | 3 cut(s) | 1625, 3086, 4092 |
| HapII | CCGG | 4 cut(s) | 1688, 2020, 4683, 4939 |
| HgaI | GACGC | 1 cut(s) | 5032 |
| HhaI | GCGC | 4 cut(s) | 1647, 2854, 2992, 4647 |
| Hin6I | GCGC | 4 cut(s) | 1645, 2852, 2990, 4645 |
| HinP1I | GCGC | 4 cut(s) | 1645, 2852, 2990, 4645 |
| HincII | GTYRAC | 3 cut(s) | 1985, 3019, 4944 |
| HindII | GTYRAC | 3 cut(s) | 1985, 3019, 4944 |
| HindIII | AAGCTT | 1 cut(s) | 2681 |
| HpaI | GTTAAC | 2 cut(s) | 3019, 4944 |
| HpaII | CCGG | 4 cut(s) | 1688, 2020, 4683, 4939 |
| Hpy166II | GTNNAC | 9 cut(s) | 923, 1667, 1985, 2157, 3019, 3893, 4346, 4944, 5039 |
| Hpy8I | GTNNAC | 9 cut(s) | 923, 1667, 1985, 2157, 3019, 3893, 4346, 4944, 5039 |
| Hpy99I | CGWCG | 1 cut(s) | 790 |
| HpyCH4IV | ACGT | 3 cut(s) | 1372, 4069, 5065 |
| HpySE526I | ACGT | 3 cut(s) | 1372, 4069, 5065 |
| HspAI | GCGC | 4 cut(s) | 1645, 2852, 2990, 4645 |
| KpnI | GGTACC | 1 cut(s) | 4938 |
| KroI | GCCGGC | 1 cut(s) | 2019 |
| KroNI | GCCGGC | 1 cut(s) | 2021 |
| KspAI | GTTAAC | 2 cut(s) | 3019, 4944 |
| LmnI | GCTCC | 8 cut(s) | 1653, 1932, 3211, 3451, 3599, 4111, 4153, 4766 |
| Lsp1109I | GCAGC | 8 cut(s) | 77, 544, 1594, 2667, 3749, 3752, 3776, 4208 |
| MaeI | CTAG | 7 cut(s) | 42, 447, 501, 816, 990, 1505, 4317 |
| MaeII | ACGT | 3 cut(s) | 1372, 4069, 5065 |
| MaeIII | GTNAC | 8 cut(s) | 476, 887, 938, 1094, 1187, 3034, 3574, 4790 |
| MflI | RGATCY | 5 cut(s) | 242, 547, 1171, 1417, 1636 |
| MhlI | GDGCHC | 4 cut(s) | 1116, 2242, 3834, 4150 |
| MlyI | GAGTC | 8 cut(s) | 866, 866, 2603, 2939, 3249, 3406, 3552, 3823 |
| MmeI | TCCRAC | 8 cut(s) | 201, 220, 1736, 2727, 3114, 3383, 3977, 4380 |
| Mph1103I | ATGCAT | 2 cut(s) | 3655, 3778 |
| MroNI | GCCGGC | 1 cut(s) | 2019 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2421, 3060 |
| MslI | CAYNNNNRTG | 6 cut(s) | 36, 231, 774, 2598, 2847, 4728 |
| MspA1I | CMGCKG | 4 cut(s) | 866, 2658, 2794, 2924 |
| MspI | CCGG | 4 cut(s) | 1688, 2020, 4683, 4939 |
| MspR9I | CCNGG | 6 cut(s) | 1351, 2856, 3905, 4684, 4727, 4939 |
| Mva1269I | GAATGC | 2 cut(s) | 1849, 4219 |
| MvaI | CCWGG | 4 cut(s) | 1351, 2856, 3905, 4727 |
| MvnI | CGCG | 1 cut(s) | 5026 |
| NaeI | GCCGGC | 1 cut(s) | 2021 |
| NciI | CCSGG | 2 cut(s) | 4684, 4939 |
| NcoI | CCATGG | 2 cut(s) | 2593, 4042 |
| NdeI | CATATG | 3 cut(s) | 1012, 2053, 2346 |
| NgoMIV | GCCGGC | 1 cut(s) | 2019 |
| NmeAIII | GCCGAG | 1 cut(s) | 1997 |
| NmuCI | GTSAC | 5 cut(s) | 887, 1094, 1187, 3034, 4790 |
| NsiI | ATGCAT | 2 cut(s) | 3655, 3778 |
| NspV | TTCGAA | 2 cut(s) | 2371, 4555 |
| PaeR7I | CTCGAG | 2 cut(s) | 1676, 2889 |
| PagI | TCATGA | 2 cut(s) | 1390, 4834 |
| PaqCI | CACCTGC | 1 cut(s) | 2885 |
| PceI | AGGCCT | 2 cut(s) | 2359, 5014 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1969, 3919 |
| PctI | GAATGC | 2 cut(s) | 1849, 4219 |
| PdiI | GCCGGC | 1 cut(s) | 2021 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2421, 3060 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 2836, 3593, 4732 |
| PleI | GAGTC | 8 cut(s) | 865, 866, 2603, 2939, 3249, 3405, 3551, 3822 |
| PmaCI | CACGTG | 1 cut(s) | 1373 |
| PmlI | CACGTG | 1 cut(s) | 1373 |
| PpsI | GAGTC | 8 cut(s) | 865, 866, 2603, 2939, 3249, 3405, 3551, 3822 |
| Ppu21I | YACGTR | 2 cut(s) | 1373, 5066 |
| PsiI | TTATAA | 1 cut(s) | 2198 |
| Psp6I | CCWGG | 4 cut(s) | 1349, 2854, 3903, 4725 |
| PspCI | CACGTG | 1 cut(s) | 1373 |
| PspGI | CCWGG | 4 cut(s) | 1349, 2854, 3903, 4725 |
| PspOMI | GGGCCC | 1 cut(s) | 3830 |
| PspXI | VCTCGAGB | 2 cut(s) | 1676, 2889 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4409, 4441 |
| PstI | CTGCAG | 2 cut(s) | 349, 3322 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3904 |
| PsuI | RGATCY | 5 cut(s) | 242, 547, 1171, 1417, 1636 |
| RseI | CAYNNNNRTG | 6 cut(s) | 36, 231, 774, 2598, 2847, 4728 |
| ScaI | AGTACT | 1 cut(s) | 2459 |
| SchI | GAGTC | 8 cut(s) | 866, 866, 2603, 2939, 3249, 3406, 3552, 3823 |
| ScrFI | CCNGG | 6 cut(s) | 1351, 2856, 3905, 4684, 4727, 4939 |
| SduI | GDGCHC | 4 cut(s) | 1116, 2242, 3834, 4150 |
| SfcI | CTRYAG | 4 cut(s) | 345, 412, 3025, 3318 |
| Sfr274I | CTCGAG | 2 cut(s) | 1676, 2889 |
| SfuI | TTCGAA | 2 cut(s) | 2371, 4555 |
| SinI | GGWCC | 3 cut(s) | 223, 3820, 4979 |
| SlaI | CTCGAG | 2 cut(s) | 1676, 2889 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 36, 231, 774, 2598, 2847, 4728 |
| SmlI | CTYRAG | 7 cut(s) | 1676, 1727, 2611, 2889, 3259, 3609, 3965 |
| SmoI | CTYRAG | 7 cut(s) | 1676, 1727, 2611, 2889, 3259, 3609, 3965 |
| SseBI | AGGCCT | 2 cut(s) | 2359, 5014 |
| SspI | AATATT | 5 cut(s) | 371, 1219, 1942, 2536, 2940 |
| SspMI | CTAG | 7 cut(s) | 42, 447, 501, 816, 990, 1505, 4317 |
| StuI | AGGCCT | 2 cut(s) | 2359, 5014 |
| StyD4I | CCNGG | 6 cut(s) | 1349, 2854, 3903, 4682, 4725, 4937 |
| StyI | CCWWGG | 4 cut(s) | 2593, 2902, 4042, 4201 |
| TaiI | ACGT | 3 cut(s) | 1375, 4072, 5068 |
| TatI | WGTACW | 5 cut(s) | 922, 1618, 2154, 2457, 2807 |
| TauI | GCSGC | 2 cut(s) | 2797, 5029 |
| TseFI | GTSAC | 5 cut(s) | 887, 1094, 1187, 3034, 4790 |
| TseI | GCWGC | 8 cut(s) | 65, 557, 1607, 2655, 3737, 3740, 3789, 4196 |
| Tsp45I | GTSAC | 5 cut(s) | 887, 1094, 1187, 3034, 4790 |
| TspGWI | ACGGA | 4 cut(s) | 421, 1184, 1684, 4879 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 2836, 3593, 4732 |
| VpaK11BI | GGWCC | 3 cut(s) | 223, 3820, 4979 |
| XbaI | TCTAGA | 2 cut(s) | 500, 4316 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2600 |
| XhoI | CTCGAG | 2 cut(s) | 1676, 2889 |
| XmiI | GTMKAC | 2 cut(s) | 1666, 4345 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2421, 3060 |
| XspI | CTAG | 7 cut(s) | 42, 447, 501, 816, 990, 1505, 4317 |
| ZrmI | AGTACT | 1 cut(s) | 2459 |
| Zsp2I | ATGCAT | 2 cut(s) | 3655, 3778 |