RLG00000034735

chromodomain-helicase-DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0007957
Physical Location & Seq
Reverse (-)
53117968 .. 53136519
18552 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034735

Sequence Viewer

Length: 5412 bp
ATGACTGGAATGAATTTCCCCAGAAATCCGACCAATAATCCGACCCGGCGAACCAAATTGAAACCTTCGTATCCTTTCTCGCCCGGCGGGTCATTTTCCGGCGAGTCCACGTGGAAAAGGGGCAGTGATCGTTTATATGATTCGATAGAAGTTCCATGTGAAGGAATGGCCTTTTTCAGGAACTACTCTAATGAAACAGTTTCACATAGTTTCCTGGAAGACCAGAGCCAGGGACCACGTGATGATAGAATTCACAGCTCCTCAGGGAATGCGGATGCACATGGAATGTCTTGTGATAAGGAGTTTGATATGAATATGGATGTGAAGTATCAAAGTGAAGATGAACAAGATGTTCCTAGTAGGTTGCAAAATGAGGCAGCTGCTGATGAGGGTGCCGGTGCCGGAGTGTCCAATTCCCAGTCTTCTGGGAGGAGGACGACTGTGGCTGGAAAATGGGGTTCAACCTTTTGGAAGGATTGTCAACCTATGTGCCCTCAGGGTGGATCCGATTCTGGACAGGACACTAAAAGTGGGTCTGAGTACAGAAACGCGGTTGGATCGGAAGATAATTCTTCGGATGTCAGAGAAGATAGATTAGATTCTGAAGATGATGGCAGACCTAAAGTACGAAAGGGACAACGGGGCCATTCTGATATACCTGCAGATGAAATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGAACAGAGTGACTCAATGCATTATAGAGGGTTTCATCATTCAGTTGGGTCCACTTCCAGGCCACAATCAAAGCCAGCCCCTGTCACCAATCACATGCTTAGGACTTCTAAACTTTCAAATAATAATGGAAATTATGATGATGGCGAAGATGACAATGAAAATATTGATGCTGCTGATGCTGATTACGAAGAAGAGGATGAAGATGAAGATGATCCTGATGATGCAGATTTTGAACCTGATTATGGTGTTCCAAGTGGTCGCACTGCAAAGAAGGATAAAGATTGGAATGATCAAGATTCTGATGAAGATAATGACAGTGATGATGAACTTGACATCTCAGATGAAGATAATTCTTTTTATGCGAAGAAACCAAAGGGTAGGCATCGTGGTAAAGGTGCACATACTGTTAAACTTAAAAGAGAACGCAAATCATACCATGGATCTAGTCGACAAAGAAGAAGAAAGTCATCATTTGATGATGATGAGTCCTCAGCAGAGGACTCTGAGAGTGACAGTGATGAGGGTTTTAAAAGCACGAGAAGGAAAGGTGCACATATCCGCAAAAGTAATGGCCGGACAACGAATGTCACTGGACGAAATGGTGAAGTACGAACTTCTACTAGGTCTGTTCGAAAGGTGTCATATGTTGAAAGTGAAGGAAGTGATGAAATTGATGAAGGCAAGAAAAAGAAGTTGCAAAAGGAGGAGATTGAGGAGGAGGATGGTGACTATATTGAAAAGGTGCTCTGGCATCAACCAAAGGGCATGGCTGAAGATGCTATTCGGAATAATAGATCCACAGAGCCTCTGTTGTTAAGTCACTTGTTTGACTCTGAGCCAGATTGGAGTAATACAGAATTCTTGATCAAATGGAAAGGCTTGTCACATTTGCACTGCCAGTGGAAATCATTTTCTGAGCTACAAAGTCTTAGCGGTTTTAAGAAGGTTTTAAACTACACTAAAAAGGTGATGGAGGATGCCAGGTACAGGAAGACCCTCTCACGTGAAGAGATTGAGGTTCATGACGTGAGCAGGGAAATGGACTTAGATCTCATCAAGCAAAACAGTCAGGTGGAGAGAATAATTGCAGACCGCATCAAGCAAGATAGCTCAGGTGATGTAGTACCTGAGTATCTTGTCAAGTGGCAAGGATTGTCTTATGCTGAAGCGACATGGGAGAAGGACGTCGATATTGCATTTGCACAAGATGCTATTGATGAGTTCAAGGCTCGTGAGGCTGCAATGGCTGTACAAGGGAAAATGGTCGATCTCCAACGCAAGAAAAGCAAAGGAAGTCTAAGGAAGCTTGATGAACAGCCTGAATGGTTGAAAGGGGGAAAGCTTCGTGATTATCAGCTTGAGGGTTTGAATTTTCTTGTTAATAGTTGGAGAAATGATACCAATGTCATTTTAGCTGATGAAATGGGTCTTGGCAAAACTGTTCAGTCAGTTTCGATGCTTGGTTTTTTACAGAATGCTCAACAGATTGATGGGCCATTTCTCGTTGTTGTACCATTATCTACTTTGTCAAATTGGGCAAAAGAATTTAGGAAATGGCTTCCTGATCTGAATGTTATAGTGTATGTTGGTACCCGTGCAAGCCGAGAGGTTTGTCAGCAGTATGAATTCAATAATGAGAAAATAGTTGGCCGGCCTATAAAATTTAATGCACTGTTGACAACATATGAAGTGGTTCTAAAGGATAAGGCTGTTCTTTCCAAGATCAAGTGGAATTATCTGATGGTGGATGAAGCTCATAGGCTAAAGAACAGTGAGGCTCAGCTGTACACAACTCTCTTGGAATTTAGCACAAAAAACAAGTTGCTTATAACCGGAACCCCATTGCAGAACAGTGTAGAAGAGTTATGGGCCCTGCTTCACTTCCTAGATCCCCACAAGTTCAATAACAAAGATGATTTTGTTCAGAACTACAAGAATCTCAGTTCATTTAATGAGATTGAGCTTGCTAATCTTCACATGGAACTGAGGCCTCACATTCTCCGAAGAGTTATTAAGGATGTTGAAAAGTCTTTACCTCCAAAAATTGAACGAATTCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTACTACAAGTGGATTTTGGAGCGCAACTTCCATAACTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCATTGTTGAATATTGTAGTAGAGTTGAAGAAATGCTGTAATCATCCCTTCCTTTTTGAAAGTGCTGACCATGGTTATGGTGGGGACTCAAGCAGCAAAGATGGCAGTAAATTGGAGAGAATTATTTTAAGCAGTGGGAAGTTGGTTATACTTGATAAGCTTCTTGTTAGATTACATGAGACGAAACACCGTGTTCTCATCTTTTCCCAGATGGTAAGAATGTTGGACATACTAGCTGAGTATATGTCGCATAGAGGGTTTCAATTTCAGCGACTTGATGGAAGTACAAAGGCTGATTTACGTCACCAGGCTATGGAACATTTCAATGCACCTGGTAGTGAAGATTTTTGCTTCCTTCTTTCAACACGGGCAGGTGGCTTGGGAATCAACCTTGCCACGGCGGACACGGTTATAATATTTGATTCGGATTGGAATCCTCAAAACGACTTGCAGGCAATGAGTAGAGCTCACAGAATTGGGCAACAGGAAGTTGTCAACATCTATAGATTTGTAACAAGCAAGAGTGTTGAGGAAGATATCTTGGAGCGAGCTAAGAAAAAGATGGTGCTAGACCATTTGGTGATTCAAAAGTTAAACGCAGAGGGAAGATTGGAGAAGAAAGAAACCAAAAAGGGGACTTTATTTGATAAAAATGAGCTATCTGCTATCTTAAGATTTGGAGCTGAGGAACTGTTTAAGGAAGAGAAAAATGAAGAAGAAAGCAAGAAAGGACTATTAAGTATGGATATTGATGAGATTCTTGAGAGGGCAGAAAAGGTTGAAGAGAAGGAAACTACAGAGGATGGCCATGAATTGCTGAGTGCTTTTAAGGTTGCAAATTTTGGTACTGCTGAAGACGATGGGAGTTTTTGGAGTCGTTGGATAAAGCCAGAAGCAGTGTCCCAAGCTGAAGATGCTCTTGCTCCTCGTGCAACAAGGAATACCAAGAGCTATGCAGAAGCTGCTCAGCCTGATAGGATCAATAAAAGGAAAAAGAAAGAATCTGAGCCTCAGGAAAGAGTCCAGAAAAGGCGCAAACCAGATCATTCAGTTCCATCAGCACCAATGATCGATGGAGCATCTGCTCAAGTAAGAGGATGGTCATCTGGAAATGTGTCTAAACGAGATGCATTGCGGTTTTCCCGTGCGGTTATGAAGTTTGGGAATGAGAGCCAAATTGGCTTAATAGTTGAGGAGGTCGGTGGCGCAATTGCGGCAGCTTCACCTGAAGCCCAGGTTGAGCTTTTCAATGCATTGATCGATGGATGCAGAGAAGCAGTTGAAATGGGGAGTTTGGACCAGAAGGGACCCTTGCTTGATTTTTTTGGTGTCCCTGTGAAGGCTAGTGATCTGGTCAACCGCGTTCAAGAACTTCAGCTCCTGGCAAAGCGCATTATTCGATATGAAGACCCGATTGGACAGTTCCGTGTCCTGATGTACCTCAAACCTTCAAACTGGTCAAAAGGTTGTGGCTGGAATCAGATTGATGATGCAAGGTTACTTCTCGGAATATACTACCATGGGTTTGGCAATTGGGAAAAGATAAGATTAGATGAAAGGCTTGGCCTTATGAAGAAGATTGCTCCTGTAGAACTTCAGCACCATGAAACTTTCTTACCCCGTGCTCCAAATTTGAGAGACCGTGCTAATGCTCTTTTGGAAATGGAACTTGCAGCTCTTGGGGGAAAGAGTGCAAATGCTAAAGTTGGTCGTAAGGCTTCCAAAGAGAGGGAAAATCCTGTCCCTGTTTCTGTGTCTCGCACTGGGGTCAAGAAAGGAAAAGCAGGTTCTTCTAGACTTAATGTCCAAATGAACAAGGACAAACCGCTGAAACCCCAGAGAGTTGAACCTTTAGTGAAAGAAGAGGGTGAAATGTCTGACGATGAAGAAGTATATGAGAAGTTTAAGGAAGAGAAATGGATGGAATGGTGTGAAGAGATGATGACTAGTGAAATTAAAACCCTGAATCGTCTTCATCGTTTGCAGACGACTAGTGCCAATCTTCCAAAGGACAAGGTGCTTTCAAAAATTCGAAATTATTTACAGCTTCTTGGACGAAGGATAGACGAAATTGTTTTGGACAATGAGGAGGAACCATATGGACAGGATAGGATGACCACGCGCTTGTGGAACTTTGTTTCTACATTTTCAAACCTGTCTGGAGAGAGACTTCACCAAATATATGCGAAACTTAAACAAGAGCAGGATGAGGAACCTGGTCCTTCCCACATCAATGGCTCTGCATCTGGTCCTTTTGGCAGAGACAATGACCCTACTTCCTTCTCCCATCTTGCTGAGAGGCAAAGAGGGTACAAAAGTGTTAATAACCAAACATTTGAACCTCTGAAGGGTTTTGATACAGCTAAATTTGAAGCATGGAAACGAAGGAGAAGAGGGGAGACTGATGGTCCATCTCAAAGACCTTTGAGTAATGGTTCTCGGCCAGCTGATCCAAACTCGATGGGAATTCTGGGTGCAGGACCATCCGAAAATAGACGCTCTGTCAATGAAAAGCCTTATAAGACTCGTCAAACCGGTTTACCACCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo DUF4208 Helicase_C SLIDE SNF2_N

Protein Analysis

1804

Amino Acids

205.03

Weight (kDa)

5.87

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chromo PF00385 592 - 646 1.4e-14 Chromo (CHRromatin Organisation MOdifier) domain
ResIII PF04851 682 - 849 8.1e-11 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 686 - 970 2.2e-86 SNF2-related domain
DEAD PF00270 697 - 854 3.2e-07 DEAD/DEAH box helicase
HDA2-3 PF11496 921 - 1145 3e-11 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 1000 - 1113 2.9e-26 Helicase conserved C-terminal domain
HTH_CHD1_Hrp3 PF23588 1425 - 1506 8.3e-23 ATP-dependent helicase CHD1-2/hrp3 HTH domain
CHD1-like_C PF13907 1589 - 1683 1.1e-15 Chromodomain-helicase-DNA-binding protein 1-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 2534, 3272, 5379
AarI CACCTGC 1 cut(s) 3221
AatII GACGTC 1 cut(s) 1893
Acc36I ACCTGC 3 cut(s) 667, 3221, 4634
Acc65I GGTACC 1 cut(s) 2294
AccB1I GGYRCC 3 cut(s) 392, 398, 2294
AccB7I CCANNNNNTGG 1 cut(s) 3172
AccI GTMKAC 1 cut(s) 1153
AccII CGCG 3 cut(s) 551, 4221, 4981
AclWI GGATC 9 cut(s) 498, 511, 565, 911, 1153, 1494, 2588, 3845, 5303
AcoI YGGCCR 4 cut(s) 1276, 2353, 3664, 5300
AcvI CACGTG 3 cut(s) 111, 239, 1709
AcyI GRCGYC 1 cut(s) 1890
AflII CTTAAG 1 cut(s) 3529
AgeI ACCGGT 1 cut(s) 5393
AhdI GACNNNNNGTC 3 cut(s) 4661, 5265, 5360
AhlI ACTAGT 2 cut(s) 4805, 4850
AjiI CACGTC 1 cut(s) 1732
AjnI CCWGG 9 cut(s) 213, 228, 761, 1685, 3165, 3190, 4092, 4239, 5074
AjuI GAANNNNNNNTTGG 4 cut(s) 2118, 2150, 4257, 4289
AloI GAACNNNNNNTCC 2 cut(s) 4221, 4253
Alw21I GWGCWC 5 cut(s) 1105, 1258, 1452, 3328, 4486
Alw26I GTCTC 7 cut(s) 2781, 3032, 4491, 4620, 5020, 5115, 5252
Alw44I GTGCAC 2 cut(s) 1101, 1254
AlwI GGATC 9 cut(s) 498, 511, 565, 911, 1153, 1494, 2588, 3845, 5303
AlwNI CAGNNNCTG 4 cut(s) 383, 785, 3821, 4240
ApaI GGGCCC 1 cut(s) 2578
ApaLI GTGCAC 2 cut(s) 1101, 1254
ApeKI GCWGC 8 cut(s) 377, 380, 875, 1943, 2952, 3821, 4076, 4532
AsiGI ACCGGT 1 cut(s) 5393
Asp700I GAANNNNTTC 2 cut(s) 2397, 2757
Asp718I GGTACC 1 cut(s) 2294
AspLEI GCGC 5 cut(s) 2817, 3894, 4067, 4251, 4983
AsuC2I CCSGG 2 cut(s) 46, 84
AsuII TTCGAA 2 cut(s) 1336, 4891
AvaII GGWCC 8 cut(s) 233, 753, 4156, 4166, 5078, 5108, 5267, 5339
AxyI CCTNAGG 3 cut(s) 262, 495, 3870
BaeGI GKGCMC 4 cut(s) 494, 1105, 1258, 2578
BaeI ACNNNNGTAYC 8 cut(s) 53, 86, 1820, 1853, 2094, 2127, 5161, 5194
BalI TGGCCA 1 cut(s) 3666
BamHI GGATCC 1 cut(s) 503
BanI GGYRCC 3 cut(s) 392, 398, 2294
BanII GRGCYC 2 cut(s) 2578, 3328
BauI CACGAG 3 cut(s) 1240, 1935, 3786
BbrPI CACGTG 3 cut(s) 111, 239, 1709
BbsI GAAGAC 6 cut(s) 225, 414, 1703, 3720, 4272, 4823
Bbv12I GWGCWC 5 cut(s) 1105, 1258, 1452, 3328, 4486
BbvCI CCTCAGC 2 cut(s) 1195, 3543
BbvI GCAGC 8 cut(s) 367, 389, 862, 1930, 2964, 3808, 4088, 4544
BceAI ACGGC 1 cut(s) 3273
BciT130I CCWGG 9 cut(s) 215, 230, 763, 1687, 3167, 3192, 4094, 4241, 5076
BciVI GTATCC 1 cut(s) 81
BclI TGATCA 2 cut(s) 994, 1569
BcnI CCSGG 2 cut(s) 46, 84
BcoDI GTCTC 7 cut(s) 2781, 3032, 4491, 4620, 5020, 5115, 5252
BcuI ACTAGT 2 cut(s) 4805, 4850
BfmI CTRYAG 4 cut(s) 660, 3361, 3654, 4446
BfrI CTTAAG 1 cut(s) 3529
BfuAI ACCTGC 3 cut(s) 667, 3221, 4634
BfuI GTATCC 1 cut(s) 81
BglI GCCNNNNNGGC 1 cut(s) 4038
BglII AGATCT 1 cut(s) 1753
BisI GCNGC 9 cut(s) 378, 381, 876, 1944, 2953, 3822, 4074, 4077, 4533
BlpI GCTNAGC 2 cut(s) 2484, 3825
BlsI GCNGC 9 cut(s) 379, 382, 877, 1945, 2954, 3823, 4075, 4078, 4534
BmcAI AGTACT 1 cut(s) 2795
Bme18I GGWCC 8 cut(s) 233, 753, 4156, 4166, 5078, 5108, 5267, 5339
BmeRI GACNNNNNGTC 3 cut(s) 4661, 5265, 5360
BmgBI CACGTC 1 cut(s) 1732
BmrI ACTGGG 2 cut(s) 412, 4632
BmuI ACTGGG 2 cut(s) 412, 4632
BpiI GAAGAC 6 cut(s) 225, 414, 1703, 3720, 4272, 4823
BplI GAGNNNNNCTC 2 cut(s) 3310, 3342
BpmI CTGGAG 1 cut(s) 5040
Bpu10I CCTNAGC 4 cut(s) 803, 1195, 1816, 3543
Bpu1102I GCTNAGC 2 cut(s) 2484, 3825
Bpu14I TTCGAA 2 cut(s) 1336, 4891
BpuEI CTTGAG 4 cut(s) 2084, 2932, 3641, 3930
BpuMI CCSGG 2 cut(s) 46, 84
Bsa29I ATCGAT 2 cut(s) 3930, 4119
BsaAI YACGTR 3 cut(s) 111, 239, 1709
BsaBI GATNNNNATC 2 cut(s) 3291, 3961
BsaHI GRCGYC 1 cut(s) 1890
BsaI GGTCTC 1 cut(s) 4491
BsaJI CCNNGG 6 cut(s) 229, 1141, 2929, 3255, 4092, 4378
BsaWI WCCGGW 2 cut(s) 2537, 5393
BsaXI ACNNNNNCTCC 2 cut(s) 4221, 4251
Bse118I RCCGGY 3 cut(s) 395, 2355, 5393
Bse1I ACTGG 6 cut(s) 10, 418, 1300, 1603, 4319, 4627
Bse21I CCTNAGG 3 cut(s) 262, 495, 3870
Bse3DI GCAATG 4 cut(s) 1953, 2546, 3321, 3989
Bse8I GATNNNNATC 2 cut(s) 3291, 3961
BseBI CCWGG 9 cut(s) 215, 230, 763, 1687, 3167, 3192, 4094, 4241, 5076
BseCI ATCGAT 2 cut(s) 3930, 4119
BseDI CCNNGG 6 cut(s) 229, 1141, 2929, 3255, 4092, 4378
BseJI GATNNNNATC 2 cut(s) 3291, 3961
BseMI GCAATG 4 cut(s) 1953, 2546, 3321, 3989
BseNI ACTGG 6 cut(s) 10, 418, 1300, 1603, 4319, 4627
BseRI GAGGAG 9 cut(s) 250, 445, 1424, 1433, 1436, 2769, 3774, 4067, 4961
BseSI GKGCMC 4 cut(s) 494, 1105, 1258, 2578
BseXI GCAGC 8 cut(s) 367, 389, 862, 1930, 2964, 3808, 4088, 4544
BsgI GTGCAG 1 cut(s) 5355
Bsh1236I CGCG 3 cut(s) 551, 4221, 4981
BshNI GGYRCC 3 cut(s) 392, 398, 2294
BshTI ACCGGT 1 cut(s) 5393
BshVI ATCGAT 2 cut(s) 3930, 4119
BsiHKAI GWGCWC 5 cut(s) 1105, 1258, 1452, 3328, 4486
BsiSI CCGG 9 cut(s) 46, 84, 99, 396, 402, 1279, 2356, 2538, 5394
BslFI GGGAC 8 cut(s) 246, 648, 2957, 3508, 3745, 4175, 4179, 4586
BsmAI GTCTC 7 cut(s) 2781, 3032, 4491, 4620, 5020, 5115, 5252
BsmBI CGTCTC 1 cut(s) 3032
BsmFI GGGAC 8 cut(s) 246, 648, 2957, 3508, 3745, 4175, 4179, 4586
BsmI GAATGC 2 cut(s) 274, 2185
Bso31I GGTCTC 1 cut(s) 4491
Bsp119I TTCGAA 2 cut(s) 1336, 4891
Bsp120I GGGCCC 1 cut(s) 2574
Bsp1286I GDGCHC 7 cut(s) 494, 1105, 1258, 1452, 2578, 3328, 4486
Bsp1407I TGTACA 2 cut(s) 1954, 2490
Bsp1720I GCTNAGC 2 cut(s) 2484, 3825
Bsp19I CCATGG 3 cut(s) 1141, 2929, 4378
BspDI ATCGAT 2 cut(s) 3930, 4119
BspFNI CGCG 3 cut(s) 551, 4221, 4981
BspHI TCATGA 1 cut(s) 1726
BspMAI CTGCAG 1 cut(s) 664
BspMI ACCTGC 3 cut(s) 667, 3221, 4634
BspPI GGATC 9 cut(s) 498, 511, 565, 911, 1153, 1494, 2588, 3845, 5303
BspT104I TTCGAA 2 cut(s) 1336, 4891
BspT107I GGYRCC 3 cut(s) 392, 398, 2294
BspTI CTTAAG 1 cut(s) 3529
BspTNI GGTCTC 1 cut(s) 4491
BsrDI GCAATG 4 cut(s) 1953, 2546, 3321, 3989
BsrFI RCCGGY 3 cut(s) 395, 2355, 5393
BsrGI TGTACA 2 cut(s) 1954, 2490
BsrI ACTGG 6 cut(s) 10, 418, 1300, 1603, 4319, 4627
BssAI RCCGGY 3 cut(s) 395, 2355, 5393
BssECI CCNNGG 6 cut(s) 229, 1141, 2929, 3255, 4092, 4378
BssNI GRCGYC 1 cut(s) 1890
BssSI CACGAG 3 cut(s) 1240, 1935, 3786
BssT1I CCWWGG 3 cut(s) 1141, 2929, 4378
Bst2BI CACGAG 3 cut(s) 1240, 1935, 3786
Bst2UI CCWGG 9 cut(s) 215, 230, 763, 1687, 3167, 3192, 4094, 4241, 5076
BstACI GRCGYC 1 cut(s) 1890
BstAFI CTTAAG 1 cut(s) 3529
BstAPI GCANNNNNTGC 2 cut(s) 1913, 3821
BstAUI TGTACA 2 cut(s) 1954, 2490
BstBAI YACGTR 3 cut(s) 111, 239, 1709
BstBI TTCGAA 2 cut(s) 1336, 4891
BstC8I GCNNGC 7 cut(s) 780, 2305, 2357, 2670, 3312, 3408, 5304
BstDSI CCRYGG 4 cut(s) 1141, 2929, 3255, 4378
BstENI CCTNNNNNAGG 1 cut(s) 175
BstFNI CGCG 3 cut(s) 551, 4221, 4981
BstHHI GCGC 5 cut(s) 2817, 3894, 4067, 4251, 4983
BstMAI GTCTC 7 cut(s) 2781, 3032, 4491, 4620, 5020, 5115, 5252
BstNI CCWGG 9 cut(s) 215, 230, 763, 1687, 3167, 3192, 4094, 4241, 5076
BstNSI RCATGY 1 cut(s) 802
BstSFI CTRYAG 4 cut(s) 660, 3361, 3654, 4446
BstSLI GKGCMC 4 cut(s) 494, 1105, 1258, 2578
BstUI CGCG 3 cut(s) 551, 4221, 4981
BstV1I GCAGC 8 cut(s) 367, 389, 862, 1930, 2964, 3808, 4088, 4544
BstV2I GAAGAC 6 cut(s) 225, 414, 1703, 3720, 4272, 4823
BstX2I RGATCY 5 cut(s) 503, 1145, 1499, 1753, 2593
BstXI CCANNNNNNTGG 4 cut(s) 425, 2936, 4385, 5093
BstYI RGATCY 5 cut(s) 503, 1145, 1499, 1753, 2593
Bsu15I ATCGAT 2 cut(s) 3930, 4119
Bsu36I CCTNAGG 3 cut(s) 262, 495, 3870
BsuI GTATCC 1 cut(s) 81
BsuTUI ATCGAT 2 cut(s) 3930, 4119
BtgI CCRYGG 4 cut(s) 1141, 2929, 3255, 4378
BtrI CACGTC 1 cut(s) 1732
BtsI GCAGTG 5 cut(s) 130, 966, 1597, 2998, 3762
BveI ACCTGC 3 cut(s) 667, 3221, 4634
Cac8I GCNNGC 7 cut(s) 780, 2305, 2357, 2670, 3312, 3408, 5304
CaiI CAGNNNCTG 4 cut(s) 383, 785, 3821, 4240
CciI TCATGA 1 cut(s) 1726
CfoI GCGC 5 cut(s) 2817, 3894, 4067, 4251, 4983
Cfr10I RCCGGY 3 cut(s) 395, 2355, 5393
ClaI ATCGAT 2 cut(s) 3930, 4119
CseI GACGC 1 cut(s) 5364
CsiI ACCWGGT 2 cut(s) 3190, 5074
CspAI ACCGGT 1 cut(s) 5393
DraI TTTAAA 2 cut(s) 1234, 1656
DriI GACNNNNNGTC 3 cut(s) 4661, 5265, 5360
EaeI YGGCCR 4 cut(s) 1276, 2353, 3664, 5300
Eam1105I GACNNNNNGTC 3 cut(s) 4661, 5265, 5360
EciI GGCGGA 1 cut(s) 3275
Ecl136II GAGCTC 1 cut(s) 3326
Eco130I CCWWGG 3 cut(s) 1141, 2929, 4378
Eco147I AGGCCT 1 cut(s) 2695
Eco24I GRGCYC 2 cut(s) 2578, 3328
Eco31I GGTCTC 1 cut(s) 4491
Eco32I GATATC 1 cut(s) 3397
Eco47I GGWCC 8 cut(s) 233, 753, 4156, 4166, 5078, 5108, 5267, 5339
Eco53kI GAGCTC 1 cut(s) 3326
Eco72I CACGTG 3 cut(s) 111, 239, 1709
Eco81I CCTNAGG 3 cut(s) 262, 495, 3870
EcoICRI GAGCTC 1 cut(s) 3326
EcoNI CCTNNNNNAGG 1 cut(s) 175
EcoO109I RGGNCCY 2 cut(s) 2575, 4166
EcoRI GAATTC 5 cut(s) 249, 1562, 2330, 2757, 5325
EcoRII CCWGG 9 cut(s) 213, 228, 761, 1685, 3165, 3190, 4092, 4239, 5074
EcoRV GATATC 1 cut(s) 3397
EcoT14I CCWWGG 3 cut(s) 1141, 2929, 4378
EcoT22I ATGCAT 3 cut(s) 726, 3991, 4114
EcoT38I GRGCYC 2 cut(s) 2578, 3328
ErhI CCWWGG 3 cut(s) 1141, 2929, 4378
Esp3I CGTCTC 1 cut(s) 3032
FalI AAGNNNNNCTT 4 cut(s) 3762, 3794, 4154, 4186
FaqI GGGAC 8 cut(s) 246, 648, 2957, 3508, 3745, 4175, 4179, 4586
FauI CCCGC 1 cut(s) 80
FauNDI CATATG 3 cut(s) 1348, 2389, 4957
FbaI TGATCA 2 cut(s) 994, 1569
FblI GTMKAC 1 cut(s) 1153
Fnu4HI GCNGC 9 cut(s) 378, 381, 876, 1944, 2953, 3822, 4074, 4077, 4533
FriOI GRGCYC 2 cut(s) 2578, 3328
FseI GGCCGGCC 1 cut(s) 2359
Fsp4HI GCNGC 9 cut(s) 378, 381, 876, 1944, 2953, 3822, 4074, 4077, 4533
GlaI GCGC 5 cut(s) 2816, 3893, 4066, 4250, 4982
GluI GCNGC 9 cut(s) 378, 381, 876, 1944, 2953, 3822, 4074, 4077, 4533
GsuI CTGGAG 1 cut(s) 5040
HapII CCGG 9 cut(s) 46, 84, 99, 396, 402, 1279, 2356, 2538, 5394
HgaI GACGC 1 cut(s) 5364
HhaI GCGC 5 cut(s) 2817, 3894, 4067, 4251, 4983
Hin1I GRCGYC 1 cut(s) 1890
Hin6I GCGC 5 cut(s) 2815, 3892, 4065, 4249, 4981
HinP1I GCGC 5 cut(s) 2815, 3892, 4065, 4249, 4981
HincII GTYRAC 5 cut(s) 482, 1154, 2382, 3355, 4216
HindII GTYRAC 5 cut(s) 482, 1154, 2382, 3355, 4216
HindIII AAGCTT 3 cut(s) 2009, 2045, 3017
HpaII CCGG 9 cut(s) 46, 84, 99, 396, 402, 1279, 2356, 2538, 5394
Hpy99I CGWCG 1 cut(s) 1895
HpyCH4IV ACGT 6 cut(s) 110, 238, 1708, 1731, 1890, 3160
HpySE526I ACGT 6 cut(s) 110, 238, 1708, 1731, 1890, 3160
Hsp92I GRCGYC 1 cut(s) 1890
HspAI GCGC 5 cut(s) 2815, 3892, 4065, 4249, 4981
KflI GGGWCCC 1 cut(s) 4166
KpnI GGTACC 1 cut(s) 2298
KroI GCCGGC 1 cut(s) 2355
KroNI GCCGGC 1 cut(s) 2357
Ksp22I TGATCA 2 cut(s) 994, 1569
LmnI GCTCC 9 cut(s) 263, 2812, 3403, 3539, 3787, 3935, 4242, 4447, 4489
Lsp1109I GCAGC 8 cut(s) 367, 389, 862, 1930, 2964, 3808, 4088, 4544
MabI ACCWGGT 2 cut(s) 3190, 5074
MaeII ACGT 6 cut(s) 110, 238, 1708, 1731, 1890, 3160
MfeI CAATTG 2 cut(s) 4068, 4390
MflI RGATCY 5 cut(s) 503, 1145, 1499, 1753, 2593
MhlI GDGCHC 7 cut(s) 494, 1105, 1258, 1452, 2578, 3328, 4486
MlsI TGGCCA 1 cut(s) 3666
MluNI TGGCCA 1 cut(s) 3666
MlyI GAGTC 9 cut(s) 113, 710, 1199, 1199, 1529, 2939, 3742, 3888, 5377
MmeI TCCRAC 7 cut(s) 53, 65, 535, 2002, 2072, 3063, 3719
Mox20I TGGCCA 1 cut(s) 3666
Mph1103I ATGCAT 3 cut(s) 726, 3991, 4114
MroNI GCCGGC 1 cut(s) 2355
MroXI GAANNNNTTC 2 cut(s) 2397, 2757
MscI TGGCCA 1 cut(s) 3666
MslI CAYNNNNRTG 3 cut(s) 2934, 3183, 5091
Msp20I TGGCCA 1 cut(s) 3666
MspA1I CMGCKG 4 cut(s) 380, 2488, 4687, 5306
MspCI CTTAAG 1 cut(s) 3529
MspI CCGG 9 cut(s) 46, 84, 99, 396, 402, 1279, 2356, 2538, 5394
MunI CAATTG 2 cut(s) 4068, 4390
Mva1269I GAATGC 2 cut(s) 274, 2185
MvaI CCWGG 9 cut(s) 215, 230, 763, 1687, 3167, 3192, 4094, 4241, 5076
MvnI CGCG 3 cut(s) 551, 4221, 4981
NaeI GCCGGC 1 cut(s) 2357
NciI CCSGG 2 cut(s) 46, 84
NcoI CCATGG 3 cut(s) 1141, 2929, 4378
NdeI CATATG 3 cut(s) 1348, 2389, 4957
NgoMIV GCCGGC 1 cut(s) 2355
NmeAIII GCCGAG 2 cut(s) 2333, 5278
NmuCI GTSAC 8 cut(s) 713, 787, 1214, 1291, 1430, 1523, 1587, 3161
NsiI ATGCAT 3 cut(s) 726, 3991, 4114
NspI RCATGY 1 cut(s) 802
NspV TTCGAA 2 cut(s) 1336, 4891
PagI TCATGA 1 cut(s) 1726
PaqCI CACCTGC 1 cut(s) 3221
PceI AGGCCT 1 cut(s) 2695
PcsI WCGNNNNNNNCGW 1 cut(s) 4834
PctI GAATGC 2 cut(s) 274, 2185
PdiI GCCGGC 1 cut(s) 2357
PdmI GAANNNNTTC 2 cut(s) 2397, 2757
PflMI CCANNNNNTGG 1 cut(s) 3172
PfoI TCCNGGA 1 cut(s) 213
PinAI ACCGGT 1 cut(s) 5393
PkrI GCNGC 9 cut(s) 379, 382, 877, 1945, 2954, 3823, 4075, 4078, 4534
PleI GAGTC 9 cut(s) 112, 710, 1198, 1199, 1529, 2939, 3741, 3887, 5377
PmaCI CACGTG 3 cut(s) 111, 239, 1709
PmlI CACGTG 3 cut(s) 111, 239, 1709
PpsI GAGTC 9 cut(s) 112, 710, 1198, 1199, 1529, 2939, 3741, 3887, 5377
Ppu21I YACGTR 3 cut(s) 111, 239, 1709
PpuMI RGGWCCY 1 cut(s) 4166
PsiI TTATAA 3 cut(s) 2534, 3272, 5379
Psp124BI GAGCTC 1 cut(s) 3328
Psp5II RGGWCCY 1 cut(s) 4166
Psp6I CCWGG 9 cut(s) 213, 228, 761, 1685, 3165, 3190, 4092, 4239, 5074
PspCI CACGTG 3 cut(s) 111, 239, 1709
PspGI CCWGG 9 cut(s) 213, 228, 761, 1685, 3165, 3190, 4092, 4239, 5074
PspOMI GGGCCC 1 cut(s) 2574
PspPPI RGGWCCY 1 cut(s) 4166
PstI CTGCAG 1 cut(s) 664
PstNI CAGNNNCTG 4 cut(s) 383, 785, 3821, 4240
PsuI RGATCY 5 cut(s) 503, 1145, 1499, 1753, 2593
PvuII CAGCTG 3 cut(s) 380, 2488, 5306
RigI GGCCGGCC 1 cut(s) 2359
RseI CAYNNNNRTG 3 cut(s) 2934, 3183, 5091
SacI GAGCTC 1 cut(s) 3328
SalI GTCGAC 1 cut(s) 1152
SatI GCNGC 9 cut(s) 378, 381, 876, 1944, 2953, 3822, 4074, 4077, 4533
ScaI AGTACT 1 cut(s) 2795
SchI GAGTC 9 cut(s) 113, 710, 1199, 1199, 1529, 2939, 3742, 3888, 5377
SduI GDGCHC 7 cut(s) 494, 1105, 1258, 1452, 2578, 3328, 4486
SexAI ACCWGGT 2 cut(s) 3190, 5074
SfcI CTRYAG 4 cut(s) 660, 3361, 3654, 4446
SfuI TTCGAA 2 cut(s) 1336, 4891
SinI GGWCC 8 cut(s) 233, 753, 4156, 4166, 5078, 5108, 5267, 5339
SmiMI CAYNNNNRTG 3 cut(s) 2934, 3183, 5091
SmlI CTYRAG 5 cut(s) 2063, 2947, 3529, 3620, 3945
SmoI CTYRAG 5 cut(s) 2063, 2947, 3529, 3620, 3945
SpeI ACTAGT 2 cut(s) 4805, 4850
SseBI AGGCCT 1 cut(s) 2695
SspI AATATT 4 cut(s) 686, 868, 2872, 3276
SstI GAGCTC 1 cut(s) 3328
StuI AGGCCT 1 cut(s) 2695
StyI CCWWGG 3 cut(s) 1141, 2929, 4378
TaiI ACGT 6 cut(s) 113, 241, 1711, 1734, 1893, 3163
TatI WGTACW 5 cut(s) 540, 1954, 2490, 2793, 3143
TauI GCSGC 1 cut(s) 4076
TseFI GTSAC 8 cut(s) 713, 787, 1214, 1291, 1430, 1523, 1587, 3161
TseI GCWGC 8 cut(s) 377, 380, 875, 1943, 2952, 3821, 4076, 4532
Tsp45I GTSAC 8 cut(s) 713, 787, 1214, 1291, 1430, 1523, 1587, 3161
TspGWI ACGGA 1 cut(s) 4274
Van91I CCANNNNNTGG 1 cut(s) 3172
Vha464I CTTAAG 1 cut(s) 3529
VneI GTGCAC 2 cut(s) 1101, 1254
VpaK11BI GGWCC 8 cut(s) 233, 753, 4156, 4166, 5078, 5108, 5267, 5339
XagI CCTNNNNNAGG 1 cut(s) 175
XbaI TCTAGA 1 cut(s) 4652
XceI RCATGY 1 cut(s) 802
XcmI CCANNNNNNNNNTGG 1 cut(s) 2936
XmiI GTMKAC 1 cut(s) 1153
XmnI GAANNNNTTC 2 cut(s) 2397, 2757
ZraI GACGTC 1 cut(s) 1891
ZrmI AGTACT 1 cut(s) 2795
Zsp2I ATGCAT 3 cut(s) 726, 3991, 4114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.