AT2G14690

Glycosyl hydrolase family 10

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010160
Physical Location & Seq
Reverse (-)
6283801 .. 6286055
2255 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G14690.1

Sequence Viewer

Length: 1713 bp
ATGAAAAGATTCAACTATGGCTTTTTCCACTTGGTGCTTTTCCTCATCTCTCTTCTTCTTCTTGGTTCAGGAATTTGCATGGATCCTTTCTCCTACGACCAGTCTCTAAAATCAGAGTGCCTCATGGAGCCTCCACAAACAACTGCCAATACCGGAGGTGAAGGAGTCAAAGAATTGAAGATCAACGAAAATGGTGGAATCAGAAATGTAGTAGAGGGAGTTGATCTTCGGGAAGGAAACATATACATCACTTCTGCTTGGGTGAAGTTGAGAAATGAGAGTCAGAGAAAAGTAGGAATGACTTTTAGTGAGAAGAATGGGAGAAACGTTTTCGGAGGTGAAGTTATGGCGAAAAGAGGATGCTGGTCTTTGCTTAAAGGCGGTATTACCGCTGATTTCTCTGGCCCTATCGACATTTTCTTCGAGAGCGATGGCTTAGCGGGTTTGGAGATATCAGTACAAAATGTGAGGATGCAACGGTTCCACAAAACTCAATGGAGGCTACAACAAGACCAAGTTATTGAAAAGATTCGGAAGAATAAAGTGAGATTTCAAATGAGTTTTAAGAACAAAAGTGCATTAGAAGGATCAGTGATTTCCATAGAACAGATCAAACCATCATTCCTCCTTGGTTGTGCTATGAACTACCGTATTTTGGAAAGCGATAGCTATAGAGAATGGTTTGTGTCGCGGTTTAGACTCACTTCATTCACCAATGAAATGAAATGGTATGCAACTGAGGCAGTGAGAGGTCAAGAGAACTACAAAATAGCTGATTCAATGATGCAGCTCGCGGAGGAAAATGCGATTCTAGTTAAAGGACATACGGTCTTGTGGGACGATAAGTATTGGCAGCCGAATTGGGTAAAGACGATCACGGATCCTGAAGATTTAAAGAATGTGACACTCAACAGAATGAACTCGGTTATGAAGAGATATAAAGGGAGACTAATAGGATGGGATGTGATGAATGAGAATGTACATTTCAACTACTTTGAGAACATGCTTGGTGGAAACGCTTCAGCTATTGTCTACTCTTTGGCCTCTAAGTTGGATCCTGATATACCGTTGTTCCTAAACGAATTCAACACGGTAGAGTATGATAAAGACAGAGTTGTGAGCCCTGTTAACGTGGTAAAGAAGATGCAAGAGATTGTTTCATTCCCTGGAAACAATAATATTAAAGGAGGGATTGGAGCACAAGGTCACTTTGCTCCAGTTCAGCCCAACTTGGCTTACATGAGATACGCATTAGATACATTAGGCTCTTTGAGTTTTCCGGTTTGGCTTACGGAGGTTGATATGTTCAAGTGCCCGGATCAGGTAAAATACATGGAGGATATTCTGAGGGAAGCTTACTCACATCCTGCGGTTAAAGCCATAATCCTATATGGAGGGCCTGAAGTGTCCGGTTTCGACAAGTTAACGCTTGCCGATAAAGATTTCAAAAACACACAAGCAGGGGATCTCATTGACAAATTACTCCAAGAGTGGAAACAAGAACCTGTAGAGATTCCTATCCAACACCATGAACATAATGATGAAGAAGGAGGTCGAATAATCGGGTTTTCTCCGGAGATTTCCTTACTGCATGGACATTACCGAGTGACTGTAACTAATCCATCGATGAAGAACTTGTCCACCCGCTTCAGCGTGGAGGTAACTAAGGAGTCAGGTCATCTTCAAGAAGTTCAACTTGTAATTGATGCTTGA

Protein Analysis

570

Amino Acids

64.94

Weight (kDa)

6.12

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_10 PF00331 204 - 465 1.3e-38 Glycosyl hydrolase family 10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14690 AT4G33810 AT4G33810 AT4G33810 AT4G33810 AT4G33810 AT4G33820
fragaria_vesca FvH4_2g03791
malus_domestica MD05G1100900.v1.1
prunus_persica Prupe.8G145600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0252821
rosa_laevigata RLG00000015063
rosa_multiflora Rmu_co8501457.1_g000001
rosa_roxburghii Rroxscaffold_7G00212400
rosa_rugosa Rorug05G0538800 Rorug05G0538800
rosa_samantha Rh6AG054900 Rh6BG048900 Rh6CG047800 Rh6DG043300
rosa_wichuraiana Rw6G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1032
AccII CGCG 2 cut(s) 691, 794
AccIII TCCGGA 1 cut(s) 1573
AciI CCGC 7 cut(s) 381, 390, 440, 691, 794, 1370, 1645
AclI AACGTT 1 cut(s) 327
AclWI GGATC 9 cut(s) 77, 90, 595, 875, 888, 1049, 1062, 1326, 1473
AcsI RAATTY 2 cut(s) 72, 1082
AcuI CTGAAG 4 cut(s) 906, 1005, 1422, 1633
AdeI CACNNNGTG 1 cut(s) 34
AfaI GTAC 2 cut(s) 459, 981
AfiI CCNNNNNNNGG 2 cut(s) 655, 1321
AhdI GACNNNNNGTC 1 cut(s) 827
AjnI CCWGG 1 cut(s) 1165
AluBI AGCT 5 cut(s) 669, 773, 790, 1025, 1355
AluI AGCT 5 cut(s) 669, 773, 790, 1025, 1355
Alw21I GWGCWC 1 cut(s) 1201
Alw26I GTCTC 2 cut(s) 108, 940
AlwI GGATC 9 cut(s) 77, 90, 595, 875, 888, 1049, 1062, 1326, 1473
Aor13HI TCCGGA 1 cut(s) 1573
AoxI GGCC 3 cut(s) 403, 1041, 1397
ApeKI GCWGC 2 cut(s) 787, 853
ApoI RAATTY 2 cut(s) 72, 1082
ArsI GACNNNNNNTTYG 2 cut(s) 404, 436
Asp700I GAANNNNTTC 3 cut(s) 8, 528, 1018
AspS9I GGNCC 2 cut(s) 404, 1397
AsuC2I CCSGG 1 cut(s) 1316
AsuHPI GGTGA 4 cut(s) 170, 274, 350, 703
BaeGI GKGCMC 1 cut(s) 1316
BamHI GGATCC 3 cut(s) 82, 880, 1054
BanII GRGCYC 1 cut(s) 1124
Bbv12I GWGCWC 1 cut(s) 1201
BbvI GCAGC 2 cut(s) 799, 865
BccI CCATC 4 cut(s) 425, 625, 951, 1630
BciT130I CCWGG 1 cut(s) 1167
BcnI CCSGG 1 cut(s) 1316
BcoDI GTCTC 2 cut(s) 108, 940
BfaI CTAG 1 cut(s) 812
BfmI CTRYAG 2 cut(s) 670, 1506
BisI GCNGC 2 cut(s) 788, 854
BlpI GCTNAGC 1 cut(s) 436
BlsI GCNGC 2 cut(s) 789, 855
Bme1390I CCNGG 2 cut(s) 1167, 1316
BmeRI GACNNNNNGTC 1 cut(s) 827
BmgT120I GGNCC 2 cut(s) 404, 1397
BmiI GGNNCC 5 cut(s) 84, 129, 482, 882, 1056
BmrFI CCNGG 2 cut(s) 1167, 1316
BmsI GCATC 5 cut(s) 350, 462, 774, 1134, 1696
BpmI CTGGAG 1 cut(s) 1200
Bpu1102I GCTNAGC 1 cut(s) 436
BpuMI CCSGG 1 cut(s) 1316
Bsa29I ATCGAT 1 cut(s) 1625
BsaBI GATNNNNATC 1 cut(s) 1517
BsaJI CCNNGG 2 cut(s) 628, 1165
BsaWI WCCGGW 4 cut(s) 152, 1279, 1409, 1573
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bsc4I CCNNNNNNNGG 2 cut(s) 655, 1321
Bse1I ACTGG 2 cut(s) 100, 1217
Bse8I GATNNNNATC 1 cut(s) 1517
BseAI TCCGGA 1 cut(s) 1573
BseBI CCWGG 1 cut(s) 1167
BseCI ATCGAT 1 cut(s) 1625
BseDI CCNNGG 2 cut(s) 628, 1165
BseGI GGATG 5 cut(s) 365, 477, 962, 967, 1363
BseJI GATNNNNATC 1 cut(s) 1517
BseLI CCNNNNNNNGG 2 cut(s) 655, 1321
BseMII CTCAG 2 cut(s) 729, 1337
BseNI ACTGG 2 cut(s) 100, 1217
BseSI GKGCMC 1 cut(s) 1316
BseXI GCAGC 2 cut(s) 799, 865
Bsh1236I CGCG 2 cut(s) 691, 794
BshFI GGCC 3 cut(s) 405, 1043, 1399
BshVI ATCGAT 1 cut(s) 1625
BsiHKAI GWGCWC 1 cut(s) 1201
BsiSI CCGG 5 cut(s) 153, 1280, 1316, 1410, 1574
BslFI GGGAC 1 cut(s) 851
BslI CCNNNNNNNGG 2 cut(s) 655, 1321
BsmAI GTCTC 2 cut(s) 108, 940
BsmFI GGGAC 1 cut(s) 851
BsnI GGCC 3 cut(s) 405, 1043, 1399
Bsp1286I GDGCHC 3 cut(s) 1124, 1201, 1316
Bsp13I TCCGGA 1 cut(s) 1573
Bsp1407I TGTACA 1 cut(s) 979
Bsp1720I GCTNAGC 1 cut(s) 436
BspACI CCGC 7 cut(s) 381, 390, 440, 691, 794, 1370, 1645
BspANI GGCC 3 cut(s) 405, 1043, 1399
BspCNI CTCAG 2 cut(s) 730, 1338
BspDI ATCGAT 1 cut(s) 1625
BspEI TCCGGA 1 cut(s) 1573
BspFNI CGCG 2 cut(s) 691, 794
BspLI GGNNCC 5 cut(s) 84, 129, 482, 882, 1056
BspPI GGATC 9 cut(s) 77, 90, 595, 875, 888, 1049, 1062, 1326, 1473
BsrGI TGTACA 1 cut(s) 979
BsrI ACTGG 2 cut(s) 100, 1217
BssECI CCNNGG 2 cut(s) 628, 1165
BssT1I CCWWGG 1 cut(s) 628
Bst2UI CCWGG 1 cut(s) 1167
Bst4CI ACNGT 6 cut(s) 480, 650, 829, 1068, 1093, 1612
Bst6I CTCTTC 2 cut(s) 57, 926
BstAUI TGTACA 1 cut(s) 979
BstC8I GCNNGC 2 cut(s) 792, 1431
BstDEI CTNAG 5 cut(s) 436, 738, 1047, 1346, 1665
BstF5I GGATG 5 cut(s) 365, 477, 962, 967, 1363
BstFNI CGCG 2 cut(s) 691, 794
BstMAI GTCTC 2 cut(s) 108, 940
BstMWI GCNNNNNNNGC 2 cut(s) 740, 1376
BstNI CCWGG 1 cut(s) 1167
BstNSI RCATGY 1 cut(s) 1006
BstSCI CCNGG 2 cut(s) 1165, 1314
BstSFI CTRYAG 2 cut(s) 670, 1506
BstSLI GKGCMC 1 cut(s) 1316
BstUI CGCG 2 cut(s) 691, 794
BstV1I GCAGC 2 cut(s) 799, 865
BstX2I RGATCY 4 cut(s) 82, 880, 1054, 1465
BstYI RGATCY 4 cut(s) 82, 880, 1054, 1465
Bsu15I ATCGAT 1 cut(s) 1625
BsuRI GGCC 3 cut(s) 405, 1043, 1399
BsuTUI ATCGAT 1 cut(s) 1625
BtgZI GCGATG 1 cut(s) 444
BtsCI GGATG 5 cut(s) 365, 477, 962, 967, 1363
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 2 cut(s) 597, 750
Cac8I GCNNGC 2 cut(s) 792, 1431
Cfr13I GGNCC 2 cut(s) 404, 1397
ClaI ATCGAT 1 cut(s) 1625
Csp6I GTAC 2 cut(s) 458, 980
CviAII CATG 7 cut(s) 79, 124, 1003, 1240, 1333, 1529, 1592
CviQI GTAC 2 cut(s) 458, 980
DdeI CTNAG 5 cut(s) 436, 738, 1047, 1346, 1665
DraI TTTAAA 1 cut(s) 894
DraIII CACNNNGTG 1 cut(s) 34
DriI GACNNNNNGTC 1 cut(s) 827
Eam1104I CTCTTC 2 cut(s) 57, 926
Eam1105I GACNNNNNGTC 1 cut(s) 827
EarI CTCTTC 2 cut(s) 57, 926
Eco130I CCWWGG 1 cut(s) 628
Eco24I GRGCYC 1 cut(s) 1124
Eco32I GATATC 1 cut(s) 453
Eco57I CTGAAG 4 cut(s) 906, 1005, 1422, 1633
EcoO109I RGGNCCY 1 cut(s) 1397
EcoRI GAATTC 1 cut(s) 1082
EcoRII CCWGG 1 cut(s) 1165
EcoRV GATATC 1 cut(s) 453
EcoT14I CCWWGG 1 cut(s) 628
EcoT38I GRGCYC 1 cut(s) 1124
ErhI CCWWGG 1 cut(s) 628
FaeI CATG 7 cut(s) 82, 127, 1006, 1243, 1336, 1532, 1595
FalI AAGNNNNNCTT 2 cut(s) 1680, 1712
FaqI GGGAC 1 cut(s) 851
FatI CATG 7 cut(s) 78, 123, 1002, 1239, 1332, 1528, 1591
FauI CCCGC 2 cut(s) 433, 1652
FblI GTMKAC 1 cut(s) 1032
Fnu4HI GCNGC 2 cut(s) 788, 854
FokI GGATG 5 cut(s) 372, 484, 969, 974, 1350
FriOI GRGCYC 1 cut(s) 1124
Fsp4HI GCNGC 2 cut(s) 788, 854
FspBI CTAG 1 cut(s) 812
GluI GCNGC 2 cut(s) 788, 854
GsuI CTGGAG 1 cut(s) 1200
HaeIII GGCC 3 cut(s) 405, 1043, 1399
HapII CCGG 5 cut(s) 153, 1280, 1316, 1410, 1574
Hin1II CATG 7 cut(s) 82, 127, 1006, 1243, 1336, 1532, 1595
HincII GTYRAC 2 cut(s) 1129, 1425
HindII GTYRAC 2 cut(s) 1129, 1425
HindIII AAGCTT 1 cut(s) 1353
HpaI GTTAAC 2 cut(s) 1129, 1425
HpaII CCGG 5 cut(s) 153, 1280, 1316, 1410, 1574
HphI GGTGA 4 cut(s) 170, 274, 350, 703
Hpy166II GTNNAC 4 cut(s) 1033, 1129, 1425, 1641
Hpy188I TCNGA 6 cut(s) 115, 203, 285, 335, 534, 1347
Hpy188III TCNNGA 8 cut(s) 69, 230, 424, 755, 884, 1058, 1574, 1685
Hpy8I GTNNAC 4 cut(s) 1033, 1129, 1425, 1641
HpyAV CCTTC 4 cut(s) 155, 227, 578, 1541
HpyCH4III ACNGT 6 cut(s) 480, 650, 829, 1068, 1093, 1612
HpyCH4IV ACGT 2 cut(s) 327, 1131
HpyCH4V TGCA 7 cut(s) 78, 475, 578, 734, 787, 1147, 1591
HpyF10VI GCNNNNNNNGC 2 cut(s) 740, 1376
HpyF3I CTNAG 5 cut(s) 436, 738, 1047, 1346, 1665
HpySE526I ACGT 2 cut(s) 327, 1131
Hsp92II CATG 7 cut(s) 82, 127, 1006, 1243, 1336, 1532, 1595
Kpn2I TCCGGA 1 cut(s) 1573
KspAI GTTAAC 2 cut(s) 1129, 1425
LmnI GCTCC 3 cut(s) 127, 1196, 1219
Lsp1109I GCAGC 2 cut(s) 799, 865
LweI GCATC 5 cut(s) 350, 462, 774, 1134, 1696
MaeI CTAG 1 cut(s) 812
MaeII ACGT 2 cut(s) 327, 1131
MaeIII GTNAC 5 cut(s) 901, 1205, 1606, 1612, 1660
MflI RGATCY 4 cut(s) 82, 880, 1054, 1465
MhlI GDGCHC 3 cut(s) 1124, 1201, 1316
MluCI AATT 6 cut(s) 72, 173, 859, 1082, 1478, 1701
MlyI GAGTC 4 cut(s) 174, 289, 693, 1679
MmeI TCCRAC 2 cut(s) 1032, 1546
MroI TCCGGA 1 cut(s) 1573
MroXI GAANNNNTTC 3 cut(s) 8, 528, 1018
MseI TTAA 8 cut(s) 375, 564, 816, 893, 1128, 1182, 1374, 1424
MslI CAYNNNNRTG 1 cut(s) 1539
MspA1I CMGCKG 1 cut(s) 392
MspI CCGG 5 cut(s) 153, 1280, 1316, 1410, 1574
MspR9I CCNGG 2 cut(s) 1167, 1316
MvaI CCWGG 1 cut(s) 1167
MvnI CGCG 2 cut(s) 691, 794
MwoI GCNNNNNNNGC 2 cut(s) 740, 1376
NciI CCSGG 1 cut(s) 1316
NlaIII CATG 7 cut(s) 82, 127, 1006, 1243, 1336, 1532, 1595
NlaIV GGNNCC 5 cut(s) 84, 129, 482, 882, 1056
NmuCI GTSAC 3 cut(s) 901, 1205, 1606
NspI RCATGY 1 cut(s) 1006
PdmI GAANNNNTTC 3 cut(s) 8, 528, 1018
PfeI GAWTC 6 cut(s) 9, 198, 529, 776, 808, 1513
PkrI GCNGC 2 cut(s) 789, 855
PleI GAGTC 4 cut(s) 173, 288, 693, 1678
PpsI GAGTC 4 cut(s) 173, 288, 693, 1678
Psp1406I AACGTT 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 1165
PspGI CCWGG 1 cut(s) 1165
PspN4I GGNNCC 5 cut(s) 84, 129, 482, 882, 1056
PspPI GGNCC 2 cut(s) 404, 1397
PsuI RGATCY 4 cut(s) 82, 880, 1054, 1465
RsaI GTAC 2 cut(s) 459, 981
RsaNI GTAC 2 cut(s) 458, 980
RseI CAYNNNNRTG 1 cut(s) 1539
SaqAI TTAA 8 cut(s) 375, 564, 816, 893, 1128, 1182, 1374, 1424
SatI GCNGC 2 cut(s) 788, 854
Sau96I GGNCC 2 cut(s) 404, 1397
SchI GAGTC 4 cut(s) 174, 289, 693, 1679
ScrFI CCNGG 2 cut(s) 1167, 1316
SduI GDGCHC 3 cut(s) 1124, 1201, 1316
SfaNI GCATC 5 cut(s) 350, 462, 774, 1134, 1696
SfcI CTRYAG 2 cut(s) 670, 1506
SmiMI CAYNNNNRTG 1 cut(s) 1539
Sse9I AATT 6 cut(s) 72, 173, 859, 1082, 1478, 1701
SsiI CCGC 7 cut(s) 381, 390, 440, 691, 794, 1370, 1645
SspI AATATT 1 cut(s) 1180
SspMI CTAG 1 cut(s) 812
StyD4I CCNGG 2 cut(s) 1165, 1314
StyI CCWWGG 1 cut(s) 628
TaaI ACNGT 6 cut(s) 480, 650, 829, 1068, 1093, 1612
TaiI ACGT 2 cut(s) 330, 1134
TaqI TCGA 5 cut(s) 411, 423, 1416, 1555, 1625
TasI AATT 6 cut(s) 72, 173, 859, 1082, 1478, 1701
TatI WGTACW 2 cut(s) 457, 979
TfiI GAWTC 6 cut(s) 9, 198, 529, 776, 808, 1513
Tru1I TTAA 8 cut(s) 375, 564, 816, 893, 1128, 1182, 1374, 1424
Tru9I TTAA 8 cut(s) 375, 564, 816, 893, 1128, 1182, 1374, 1424
TscAI CASTG 2 cut(s) 597, 750
TseFI GTSAC 3 cut(s) 901, 1205, 1606
TseI GCWGC 2 cut(s) 787, 853
Tsp45I GTSAC 3 cut(s) 901, 1205, 1606
TspGWI ACGGA 2 cut(s) 893, 1307
TspRI CASTG 2 cut(s) 597, 750
XapI RAATTY 2 cut(s) 72, 1082
XceI RCATGY 1 cut(s) 1006
XmiI GTMKAC 1 cut(s) 1032
XmnI GAANNNNTTC 3 cut(s) 8, 528, 1018
XspI CTAG 1 cut(s) 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.