Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8501457.1

Orthogroup ID

OG0010160

Physical Location & Seq

Genomic Coordinates Reverse (-)

86 .. 2993

Gene Structure 2908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8501457.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1409 bp

cttctgtccaagtcagtgaaggaagtgagattgtagctgttgtttttaagttccccacgggcgaaagcatacgtggtggtgatgtggtagctgagcatggttgctggaccctgctaaaaggtggcatagtagcaaatttcacaagcttggttgagattttttttgagagcaaaaatacattagcggaaatatgggtggacaatgtctcgttacaaccattcaccaaggaggaatggaaatcacaccaagacaaaagcattattgagggacgaaagagtaaggtcaggttgcaggtaactaaggcaaataaagctcctcttacaggtgctaaagtgtccatcaagcagacgaagtcggacttcccattcggatgttgcatgaaccataacatcctcacaagcaccgattaccagaattggtttgcatcaagatttagatataccactttcaccaatgagatgaagtggtacagcactgagaaaatagaaggccaagaaaactatactattgcagatggcatggtgaaattttccaaagagaatggcatatctattagaggtcacaatgtcttctgggatgatccaaaaatgcagcctggctgggttaacagtaccatttcccccgagaaactacaaacagcctcagcacagagaatcaattcagtggtttctagatacagtggacaactaattgcttgggatgtaatgaatgagaatcttcacttccgattctttgaggataaacttggcgagaacgcttctgcagaattctactacacagctcaacagcttgatcctggcacaatgatgttcatgaatgagtataataccatggagtatagtggcgacgaggcatcaagtccagccaactacaagaagaaacttgaagagatcctgtcatatcctggaaatgctaatctgacagcaggaataggtttgcaaggtcactttggttctggtcagccaaatcttgcttacatgagatctgttttagactttttaggtgcaactggatatccaatatggcttacagaagtgagtgtgggagtaggcccatatcaggcccagtacttggaagaggtactaagggagggttattcgcatcctgcggtccaagggatcatcatgttcgtaggtccaatcacagccggttttaatgaaactactcttgtagataagaacttcaacaacactccatcaggagatgttgtggacaagctgattgccgagtggaaaacggggcctctggaaatgacaactgatggtcagggatttatagatgtttccttgtttcatggagattatgaggttacagctgaagacaatgtcaccaattcctcagctacactaagctttaaggttacgaaagatgaaccacaggcatttgttcaagttcagattgatacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0031176 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0045491 GO:0045493 GO:0071554 GO:0071704 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_4_9 Glyco_hydro_10

Protein Analysis

468

Amino Acids

52.21

Weight (kDa)

4.96

Isoelectric Point (pI)

25.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14690 AT4G33810 AT4G33810 AT4G33810 AT4G33810 AT4G33810 AT4G33820
fragaria_vesca	FvH4_2g03791
malus_domestica	MD05G1100900.v1.1
prunus_persica	Prupe.8G145600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0252821
rosa_laevigata	RLG00000015063
rosa_multiflora	Rmu_co8501457.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212400
rosa_rugosa	Rorug05G0538800 Rorug05G0538800
rosa_samantha	Rh6AG054900 Rh6BG048900 Rh6CG047800 Rh6DG043300
rosa_wichuraiana	Rw6G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	282
AccB7I	CCANNNNNTGG	1 cut(s)	1071
AciI	CCGC	2 cut(s)	184, 1108
AclWI	GGATC	4 cut(s)	574, 787, 885, 1126
AcsI	RAATTY	3 cut(s)	135, 526, 766
AcuI	CTGAAG	1 cut(s)	1337
AfaI	GTAC	4 cut(s)	469, 612, 1069, 1082
AfiI	CCNNNNNNNGG	3 cut(s)	322, 1059, 1071
AgsI	TTSAA	3 cut(s)	886, 1185, 1390
AjnI	CCWGG	3 cut(s)	594, 795, 903
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	4 cut(s)	574, 787, 885, 1126
Ama87I	CYCGRG	1 cut(s)	622
AoxI	GGCC	4 cut(s)	489, 1050, 1061, 1240
ApeKI	GCWGC	1 cut(s)	591
ApoI	RAATTY	3 cut(s)	135, 526, 766
ArsI	GACNNNNNNTTYG	2 cut(s)	349, 381
Asp700I	GAANNNNTTC	1 cut(s)	657
AspS9I	GGNCC	6 cut(s)	107, 1051, 1062, 1110, 1135, 1240
AsuHPI	GGTGA	5 cut(s)	91, 213, 441, 534, 1320
AvaI	CYCGRG	1 cut(s)	622
AvaII	GGWCC	3 cut(s)	107, 1110, 1135
BbsI	GAAGAC	2 cut(s)	561, 1325
BbvCI	CCTCAGC	2 cut(s)	642, 1338
BbvI	GCAGC	1 cut(s)	603
BccI	CCATC	4 cut(s)	346, 508, 1203, 1255
BciT130I	CCWGG	3 cut(s)	596, 797, 905
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	1 cut(s)	671
BfmI	CTRYAG	1 cut(s)	761
BfuAI	ACCTGC	1 cut(s)	282
BglII	AGATCT	1 cut(s)	982
BisI	GCNGC	1 cut(s)	592
BlpI	GCTNAGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	593
BmcAI	AGTACT	1 cut(s)	1069
Bme1390I	CCNGG	3 cut(s)	596, 797, 905
Bme18I	GGWCC	3 cut(s)	107, 1110, 1135
BmeT110I	CYCGRG	1 cut(s)	622
BmgT120I	GGNCC	6 cut(s)	107, 1051, 1062, 1110, 1135, 1240
BmiI	GGNNCC	2 cut(s)	109, 1241
BmrFI	CCNGG	3 cut(s)	596, 797, 905
BmrI	ACTGGG	1 cut(s)	1059
BmsI	GCATC	3 cut(s)	433, 862, 1110
BmuI	ACTGGG	1 cut(s)	1059
BpiI	GAAGAC	2 cut(s)	561, 1325
Bpu10I	CCTNAGC	2 cut(s)	642, 1338
Bpu1102I	GCTNAGC	1 cut(s)	92
BsaAI	YACGTR	1 cut(s)	73
BsaJI	CCNNGG	4 cut(s)	56, 224, 830, 1113
BsaXI	ACNNNNNCTCC	2 cut(s)	1193, 1223
Bsc4I	CCNNNNNNNGG	3 cut(s)	322, 1059, 1071
Bse118I	RCCGGY	1 cut(s)	1147
Bse1I	ACTGG	2 cut(s)	1014, 1065
BseBI	CCWGG	3 cut(s)	596, 797, 905
BseDI	CCNNGG	4 cut(s)	56, 224, 830, 1113
BseGI	GGATG	5 cut(s)	376, 389, 582, 705, 1101
BseLI	CCNNNNNNNGG	3 cut(s)	322, 1059, 1071
BseMII	CTCAG	4 cut(s)	83, 467, 656, 1352
BseNI	ACTGG	2 cut(s)	1014, 1065
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	603
BseYI	CCCAGC	1 cut(s)	599
BshFI	GGCC	4 cut(s)	491, 1052, 1063, 1242
BsiHKCI	CYCGRG	1 cut(s)	622
BsiSI	CCGG	1 cut(s)	1148
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	3 cut(s)	322, 1059, 1071
BsmAI	GTCTC	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	4 cut(s)	491, 1052, 1063, 1242
BsoBI	CYCGRG	1 cut(s)	622
Bsp143I	GATC	5 cut(s)	579, 792, 890, 982, 1118
Bsp1720I	GCTNAGC	1 cut(s)	92
Bsp19I	CCATGG	1 cut(s)	830
BspACI	CCGC	2 cut(s)	184, 1108
BspANI	GGCC	4 cut(s)	491, 1052, 1063, 1242
BspCNI	CTCAG	4 cut(s)	84, 468, 655, 1351
BspHI	TCATGA	1 cut(s)	812
BspLI	GGNNCC	2 cut(s)	109, 1241
BspMAI	CTGCAG	1 cut(s)	765
BspMI	ACCTGC	1 cut(s)	282
BspPI	GGATC	4 cut(s)	574, 787, 885, 1126
BsrFI	RCCGGY	1 cut(s)	1147
BsrI	ACTGG	2 cut(s)	1014, 1065
BssAI	RCCGGY	1 cut(s)	1147
BssECI	CCNNGG	4 cut(s)	56, 224, 830, 1113
BssMI	GATC	5 cut(s)	579, 792, 890, 982, 1118
BssT1I	CCWWGG	3 cut(s)	224, 830, 1113
Bst2UI	CCWGG	3 cut(s)	596, 797, 905
Bst4CI	ACNGT	2 cut(s)	610, 679
Bst6I	CTCTTC	2 cut(s)	881, 1070
BstBAI	YACGTR	1 cut(s)	73
BstDEI	CTNAG	7 cut(s)	92, 299, 476, 642, 1084, 1338, 1348
BstDSI	CCRYGG	2 cut(s)	56, 830
BstENI	CCTNNNNNAGG	1 cut(s)	320
BstF5I	GGATG	5 cut(s)	376, 389, 582, 705, 1101
BstKTI	GATC	5 cut(s)	582, 795, 893, 985, 1121
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	5 cut(s)	579, 792, 890, 982, 1118
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstNI	CCWGG	3 cut(s)	596, 797, 905
BstSCI	CCNGG	3 cut(s)	594, 795, 903
BstSFI	CTRYAG	1 cut(s)	761
BstV1I	GCAGC	1 cut(s)	603
BstV2I	GAAGAC	2 cut(s)	561, 1325
BstX2I	RGATCY	2 cut(s)	890, 982
BstYI	RGATCY	2 cut(s)	890, 982
BsuRI	GGCC	4 cut(s)	491, 1052, 1063, 1242
BtgI	CCRYGG	2 cut(s)	56, 830
BtsCI	GGATG	5 cut(s)	376, 389, 582, 705, 1101
BtsIMutI	CAGTG	4 cut(s)	21, 473, 668, 684
BveI	ACCTGC	1 cut(s)	282
CciI	TCATGA	1 cut(s)	812
Cfr10I	RCCGGY	1 cut(s)	1147
Cfr13I	GGNCC	6 cut(s)	107, 1051, 1062, 1110, 1135, 1240
Csp6I	GTAC	4 cut(s)	468, 611, 1068, 1081
CviAII	CATG	8 cut(s)	97, 378, 519, 813, 831, 978, 1125, 1294
CviQI	GTAC	4 cut(s)	468, 611, 1068, 1081
DdeI	CTNAG	7 cut(s)	92, 299, 476, 642, 1084, 1338, 1348
DpnI	GATC	5 cut(s)	581, 794, 892, 984, 1120
DpnII	GATC	5 cut(s)	579, 792, 890, 982, 1118
Eam1104I	CTCTTC	2 cut(s)	881, 1070
EarI	CTCTTC	2 cut(s)	881, 1070
Eco130I	CCWWGG	3 cut(s)	224, 830, 1113
Eco32I	GATATC	1 cut(s)	1015
Eco47I	GGWCC	3 cut(s)	107, 1110, 1135
Eco57I	CTGAAG	1 cut(s)	1337
Eco88I	CYCGRG	1 cut(s)	622
EcoNI	CCTNNNNNAGG	1 cut(s)	320
EcoO109I	RGGNCCY	1 cut(s)	1240
EcoRI	GAATTC	1 cut(s)	766
EcoRII	CCWGG	3 cut(s)	594, 795, 903
EcoRV	GATATC	1 cut(s)	1015
EcoT14I	CCWWGG	3 cut(s)	224, 830, 1113
ErhI	CCWWGG	3 cut(s)	224, 830, 1113
FaeI	CATG	8 cut(s)	100, 381, 522, 816, 834, 981, 1128, 1297
FalI	AAGNNNNNCTT	4 cut(s)	302, 334, 343, 375
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	8 cut(s)	96, 377, 518, 812, 830, 977, 1124, 1293
Fnu4HI	GCNGC	1 cut(s)	592
FokI	GGATG	5 cut(s)	376, 383, 589, 712, 1088
Fsp4HI	GCNGC	1 cut(s)	592
FspBI	CTAG	1 cut(s)	671
GluI	GCNGC	1 cut(s)	592
GsaI	CCCAGC	1 cut(s)	603
HaeIII	GGCC	4 cut(s)	491, 1052, 1063, 1242
HapII	CCGG	1 cut(s)	1148
Hin1II	CATG	8 cut(s)	100, 381, 522, 816, 834, 981, 1128, 1297
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HindIII	AAGCTT	2 cut(s)	144, 1350
HinfI	GANTC	3 cut(s)	653, 714, 728
HpaI	GTTAAC	1 cut(s)	606
HpaII	CCGG	1 cut(s)	1148
HphI	GGTGA	5 cut(s)	91, 213, 441, 534, 1320
Hpy166II	GTNNAC	4 cut(s)	198, 606, 682, 1212
Hpy188I	TCNGA	5 cut(s)	357, 370, 727, 920, 1397
Hpy188III	TCNNGA	5 cut(s)	428, 671, 813, 1199, 1246
Hpy8I	GTNNAC	4 cut(s)	198, 606, 682, 1212
Hpy99I	CGWCG	1 cut(s)	850
HpyAV	CCTTC	2 cut(s)	13, 481
HpyCH4III	ACNGT	2 cut(s)	610, 679
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	8 cut(s)	291, 377, 424, 511, 591, 763, 939, 1006
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	7 cut(s)	92, 299, 476, 642, 1084, 1338, 1348
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	8 cut(s)	100, 381, 522, 816, 834, 981, 1128, 1297
KspAI	GTTAAC	1 cut(s)	606
Kzo9I	GATC	5 cut(s)	579, 792, 890, 982, 1118
LmnI	GCTCC	1 cut(s)	318
Lsp1109I	GCAGC	1 cut(s)	603
LweI	GCATC	3 cut(s)	433, 862, 1110
MaeI	CTAG	1 cut(s)	671
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	7 cut(s)	209, 294, 559, 943, 1308, 1326, 1359
MalI	GATC	5 cut(s)	581, 794, 892, 984, 1120
MboI	GATC	5 cut(s)	579, 792, 890, 982, 1118
MboII	GAAGA	6 cut(s)	561, 709, 888, 898, 1087, 1330
MflI	RGATCY	2 cut(s)	890, 982
MluCI	AATT	7 cut(s)	135, 414, 526, 657, 689, 766, 1332
MmeI	TCCRAC	1 cut(s)	335
MroXI	GAANNNNTTC	1 cut(s)	657
MseI	TTAA	4 cut(s)	47, 605, 1154, 1355
MslI	CAYNNNNRTG	2 cut(s)	369, 805
MspA1I	CMGCKG	1 cut(s)	1315
MspI	CCGG	1 cut(s)	1148
MspR9I	CCNGG	3 cut(s)	596, 797, 905
MvaI	CCWGG	3 cut(s)	596, 797, 905
MwoI	GCNNNNNNNGC	1 cut(s)	310
NcoI	CCATGG	1 cut(s)	830
NdeII	GATC	5 cut(s)	579, 792, 890, 982, 1118
NlaIII	CATG	8 cut(s)	100, 381, 522, 816, 834, 981, 1128, 1297
NlaIV	GGNNCC	2 cut(s)	109, 1241
NmeAIII	GCCGAG	1 cut(s)	1251
NmuCI	GTSAC	3 cut(s)	559, 943, 1326
PagI	TCATGA	1 cut(s)	812
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	3 cut(s)	653, 714, 728
PflFI	GACNNNGTC	3 cut(s)	202, 351, 1324
PflMI	CCANNNNNTGG	1 cut(s)	1071
PfoI	TCCNGGA	1 cut(s)	903
PkrI	GCNGC	1 cut(s)	593
Ppu21I	YACGTR	1 cut(s)	73
Psp6I	CCWGG	3 cut(s)	594, 795, 903
PspFI	CCCAGC	1 cut(s)	599
PspGI	CCWGG	3 cut(s)	594, 795, 903
PspN4I	GGNNCC	2 cut(s)	109, 1241
PspPI	GGNCC	6 cut(s)	107, 1051, 1062, 1110, 1135, 1240
PstI	CTGCAG	1 cut(s)	765
PsuI	RGATCY	2 cut(s)	890, 982
PsyI	GACNNNGTC	3 cut(s)	202, 351, 1324
PvuII	CAGCTG	1 cut(s)	1315
RsaI	GTAC	4 cut(s)	469, 612, 1069, 1082
RsaNI	GTAC	4 cut(s)	468, 611, 1068, 1081
RseI	CAYNNNNRTG	2 cut(s)	369, 805
SaqAI	TTAA	4 cut(s)	47, 605, 1154, 1355
SatI	GCNGC	1 cut(s)	592
Sau3AI	GATC	5 cut(s)	579, 792, 890, 982, 1118
Sau96I	GGNCC	6 cut(s)	107, 1051, 1062, 1110, 1135, 1240
ScaI	AGTACT	1 cut(s)	1069
ScrFI	CCNGG	3 cut(s)	596, 797, 905
SfaNI	GCATC	3 cut(s)	433, 862, 1110
SfcI	CTRYAG	1 cut(s)	761
SinI	GGWCC	3 cut(s)	107, 1110, 1135
SmiMI	CAYNNNNRTG	2 cut(s)	369, 805
Sse9I	AATT	7 cut(s)	135, 414, 526, 657, 689, 766, 1332
SsiI	CCGC	2 cut(s)	184, 1108
SspMI	CTAG	1 cut(s)	671
StyD4I	CCNGG	3 cut(s)	594, 795, 903
StyI	CCWWGG	3 cut(s)	224, 830, 1113
TaaI	ACNGT	2 cut(s)	610, 679
TaiI	ACGT	1 cut(s)	75
TasI	AATT	7 cut(s)	135, 414, 526, 657, 689, 766, 1332
TatI	WGTACW	1 cut(s)	1067
TfiI	GAWTC	3 cut(s)	653, 714, 728
Tru1I	TTAA	4 cut(s)	47, 605, 1154, 1355
Tru9I	TTAA	4 cut(s)	47, 605, 1154, 1355
TscAI	CASTG	4 cut(s)	21, 480, 668, 684
TseFI	GTSAC	3 cut(s)	559, 943, 1326
TseI	GCWGC	1 cut(s)	591
Tsp45I	GTSAC	3 cut(s)	559, 943, 1326
TspDTI	ATGAA	8 cut(s)	394, 475, 721, 801, 829, 1172, 1282, 1385
TspRI	CASTG	4 cut(s)	21, 480, 668, 684
Tth111I	GACNNNGTC	3 cut(s)	202, 351, 1324
Van91I	CCANNNNNTGG	1 cut(s)	1071
VpaK11BI	GGWCC	3 cut(s)	107, 1110, 1135
XagI	CCTNNNNNAGG	1 cut(s)	320
XapI	RAATTY	3 cut(s)	135, 526, 766
XbaI	TCTAGA	1 cut(s)	670
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	1 cut(s)	671
ZrmI	AGTACT	1 cut(s)	1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.