Prupe.8G145600_v2.0.a1

Glycosyl hydrolase family 10 protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
16137966 .. 16140996
3031 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G145600.1

Sequence Viewer

Length: 1716 bp
ATGTTAACAGAAGCTTGCACCTTATTGCTGTCATGGATCTTTCTGTATTTTGGGCATGGCACCAATGCTTCGTCGACAACAAGGCAGTGCTTGGGAGATCCCTTGGAAGCTCTATATGGAGGAGGGATTGTAGTAAATCCAGAATTTAACTATAACATTGAAGGTTGGAAAGCTTTTGGAGAAGGTAAAATAGAAGAACGAATATCGAAGGAAGGAAACAGGTTCATTGTGGCACGTAGTAGAAAGCATCCATCAGACAGTTTATCGCAGAAGGTTCAAGTCGAGGAAGGGAAAATCTATAGCTTTTCTGCTTCTGTTCAAGTCAGTCAAGGAAGGGAGATTGTAGCTGTTGTCTTTAAGTTTCCGAACGGTGATGGTGTACGTGGTGGTGATGTTGTAGCTGAGGAGGGGTGCTGGACCTTGCTAAGAGGTGGCATAGTAGCAAATTTCACAAGCCCAGTTGAGATTCTTTTTGAGAGCAAAACCACATCAGTGGAAATATGGTTGGACAATGTCTCATTACAACCTTTCACCAAGGAGGAATGGAGATCCAACCAGGACAAGAGCATCAATGAGGTACGTAAGAGTAAGGTGAGGTTACAGGTAACTAAGGCAAGTAAAACTCCTCTGAAAGGCACTAAAGTATCCATCAAGCAAATCAAGTCACACTTCCCATTTGGATGTGGTATGAACCATTATATCCTCACAAACCCTGATTACCAGAATTGGTTTGCATCAAGATTTAAGTGGACCACTTTCACAAACGAGATGAAGTGGTACAGCACTGAGAAAATACAAGGCCTAGAAAACTATACCATTGCAGATAACATGGTAAAATTTGCCCAACAGAATGGGATTTCTATTAGAGGCCACAATGTCTTCTGGGACGATCCAAAGTACCAGCCTGACTGGGTTAAATCCCTTTCCCCCGAGGAACTACGAACAGCAGCAGCAAAGAGAATCAATTCTGTGGTTTGTAGATACAGAGGACAACTAATTGCTTGGGATGTAATGAATGAGAATGTTCATTTCAGATTCTTTGAGGATAACCTTGGTGAGAATGCTTCTGCAGAATCCTACTCAATAGCTCAGCAGCTTGATCCTGACACAGTTATGTTCATGAATGAGTATAATACCATTGAATATAGCGAAGACAAGAATTCAAGTGCAGCCAACTACAAGAAGAAACTTGAAGAGATTTTATCATATCCCGGAAATGCTAATCTGTCAGCCGGAATAGGGTTGCAAGGTCACTTTGGTTCTGGTCAGCCAAATCTTGCTTACATGAGATCTGTTTTAGACATGTTAGGTGCAACAGGATTACCAATATGGCTTACAGAAGTGGATGTGGGAAAAGGCCCAAATCAGGCTCAGTATTTGGAAGAGGTGCTGAGAGAGGGCTATTCTCATCCTGCAGTTAAAGGGATCATCATGTTTGTAGGCCCATTGGCAGCTGGTTTTAATGTTACCACACTTGCAGATAAGGACTTCAAAAATACTCCATCAGGAGATGTTGTGGACAAGCTGATAGATGAATGGAACTCTGGGACCCAAGAAATCACAACAGATGATCAAGGATTTATAGAACTTTCCCTTTTTCATGGAGATTATGAGATCACAGCAGAAAACCACATCACCAATTCTTCAGCTACTGTAAGCCTTAGTGTTACACAAGCTGAACCACATGCAATTGTTCAGGTTCATATTGATACCTGA

Protein Analysis

572

Amino Acids

63.87

Weight (kDa)

5.34

Isoelectric Point (pI)

31.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010160)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AccI GTMKAC 1 cut(s) 74
AclWI GGATC 6 cut(s) 44, 92, 543, 884, 1094, 1433
AcsI RAATTY 4 cut(s) 143, 445, 836, 1159
AcuI CTGAAG 1 cut(s) 1629
AfaI GTAC 4 cut(s) 381, 579, 779, 899
AfiI CCNNNNNNNGG 3 cut(s) 632, 1239, 1366
AflIII ACRYGT 1 cut(s) 1302
AgsI TTSAA 7 cut(s) 161, 278, 320, 1142, 1164, 1193, 1492
AjnI CCWGG 1 cut(s) 555
AleI CACNNNNGTG 1 cut(s) 491
Alw26I GTCTC 1 cut(s) 520
AlwI GGATC 6 cut(s) 44, 92, 543, 884, 1094, 1433
AlwNI CAGNNNCTG 1 cut(s) 1652
Ama87I CYCGRG 1 cut(s) 929
AoxI GGCC 4 cut(s) 799, 868, 1357, 1441
ApeKI GCWGC 5 cut(s) 947, 950, 1093, 1169, 1451
ApoI RAATTY 4 cut(s) 143, 445, 836, 1159
Asp700I GAANNNNTTC 1 cut(s) 964
AspS9I GGNCC 5 cut(s) 417, 750, 1358, 1442, 1548
AsuC2I CCSGG 1 cut(s) 1212
AsuHPI GGTGA 6 cut(s) 383, 401, 523, 604, 1067, 1627
AvaI CYCGRG 1 cut(s) 929
AvaII GGWCC 3 cut(s) 417, 750, 1548
BaeI ACNNNNGTAYC 2 cut(s) 627, 660
BanI GGYRCC 1 cut(s) 59
BbsI GAAGAC 2 cut(s) 871, 1158
BbvCI CCTCAGC 1 cut(s) 402
BbvI GCAGC 5 cut(s) 959, 962, 1105, 1181, 1463
BccI CCATC 4 cut(s) 259, 368, 656, 1510
BciT130I CCWGG 1 cut(s) 557
BciVI GTATCC 1 cut(s) 655
BclI TGATCA 1 cut(s) 1570
BcnI CCSGG 1 cut(s) 1212
BcoDI GTCTC 1 cut(s) 520
BfaI CTAG 1 cut(s) 803
BfmI CTRYAG 3 cut(s) 298, 1068, 1413
BfuI GTATCC 1 cut(s) 655
BglII AGATCT 1 cut(s) 1289
BisI GCNGC 5 cut(s) 948, 951, 1094, 1170, 1452
BlpI GCTNAGC 1 cut(s) 1089
BlsI GCNGC 5 cut(s) 949, 952, 1095, 1171, 1453
Bme1390I CCNGG 2 cut(s) 557, 1212
Bme18I GGWCC 3 cut(s) 417, 750, 1548
BmeT110I CYCGRG 1 cut(s) 929
BmgT120I GGNCC 5 cut(s) 417, 750, 1358, 1442, 1548
BmiI GGNNCC 3 cut(s) 61, 1549, 1550
BmrFI CCNGG 2 cut(s) 557, 1212
BmrI ACTGGG 2 cut(s) 452, 919
BmsI GCATC 3 cut(s) 256, 576, 743
BmuI ACTGGG 2 cut(s) 452, 919
BpiI GAAGAC 2 cut(s) 871, 1158
Bpu10I CCTNAGC 1 cut(s) 402
Bpu1102I GCTNAGC 1 cut(s) 1089
BpuMI CCSGG 1 cut(s) 1212
BsaAI YACGTR 3 cut(s) 236, 383, 581
BsaJI CCNNGG 4 cut(s) 102, 534, 930, 1051
BsaXI ACNNNNNCTCC 4 cut(s) 114, 144, 1500, 1530
Bsc4I CCNNNNNNNGG 3 cut(s) 632, 1239, 1366
Bse1I ACTGG 2 cut(s) 458, 914
Bse3DI GCAATG 1 cut(s) 816
BseBI CCWGG 1 cut(s) 557
BseDI CCNNGG 4 cut(s) 102, 534, 930, 1051
BseGI GGATG 5 cut(s) 247, 686, 1012, 1351, 1408
BseLI CCNNNNNNNGG 3 cut(s) 632, 1239, 1366
BseMI GCAATG 1 cut(s) 816
BseMII CTCAG 5 cut(s) 393, 777, 1103, 1382, 1385
BseNI ACTGG 2 cut(s) 458, 914
BseRI GAGGAG 3 cut(s) 135, 419, 615
BseXI GCAGC 5 cut(s) 959, 962, 1105, 1181, 1463
BsgI GTGCAG 1 cut(s) 1188
BshFI GGCC 4 cut(s) 801, 870, 1359, 1443
BshNI GGYRCC 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 929
BsiSI CCGG 2 cut(s) 1212, 1233
BslFI GGGAC 2 cut(s) 899, 1561
BslI CCNNNNNNNGG 3 cut(s) 632, 1239, 1366
BsmAI GTCTC 1 cut(s) 520
BsmFI GGGAC 2 cut(s) 899, 1561
BsmI GAATGC 1 cut(s) 1066
BsnI GGCC 4 cut(s) 801, 870, 1359, 1443
BsoBI CYCGRG 1 cut(s) 929
Bsp143I GATC 9 cut(s) 36, 97, 548, 889, 1099, 1289, 1425, 1570, 1614
Bsp1720I GCTNAGC 1 cut(s) 1089
BspANI GGCC 4 cut(s) 801, 870, 1359, 1443
BspCNI CTCAG 5 cut(s) 394, 778, 1102, 1383, 1384
BspHI TCATGA 1 cut(s) 1119
BspLI GGNNCC 3 cut(s) 61, 1549, 1550
BspMAI CTGCAG 2 cut(s) 1072, 1417
BspPI GGATC 6 cut(s) 44, 92, 543, 884, 1094, 1433
BspT107I GGYRCC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 816
BsrI ACTGG 2 cut(s) 458, 914
BssECI CCNNGG 4 cut(s) 102, 534, 930, 1051
BssMI GATC 9 cut(s) 36, 97, 548, 889, 1099, 1289, 1425, 1570, 1614
BssT1I CCWWGG 3 cut(s) 102, 534, 1051
Bst2UI CCWGG 1 cut(s) 557
Bst4CI ACNGT 4 cut(s) 260, 371, 1111, 1654
Bst6I CTCTTC 2 cut(s) 1188, 1377
BstBAI YACGTR 3 cut(s) 236, 383, 581
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 8 cut(s) 402, 425, 609, 786, 1089, 1371, 1391, 1661
BstENI CCTNNNNNAGG 1 cut(s) 630
BstF5I GGATG 5 cut(s) 247, 686, 1012, 1351, 1408
BstKTI GATC 9 cut(s) 39, 100, 551, 892, 1102, 1292, 1428, 1573, 1617
BstMAI GTCTC 1 cut(s) 520
BstMBI GATC 9 cut(s) 36, 97, 548, 889, 1099, 1289, 1425, 1570, 1614
BstNI CCWGG 1 cut(s) 557
BstNSI RCATGY 2 cut(s) 1306, 1688
BstSCI CCNGG 2 cut(s) 555, 1210
BstSFI CTRYAG 3 cut(s) 298, 1068, 1413
BstSNI TACGTA 1 cut(s) 581
BstV1I GCAGC 5 cut(s) 959, 962, 1105, 1181, 1463
BstV2I GAAGAC 2 cut(s) 871, 1158
BstX2I RGATCY 4 cut(s) 36, 97, 548, 1289
BstXI CCANNNNNNTGG 2 cut(s) 493, 851
BstYI RGATCY 4 cut(s) 36, 97, 548, 1289
BsuI GTATCC 1 cut(s) 655
BsuRI GGCC 4 cut(s) 801, 870, 1359, 1443
BtsCI GGATG 5 cut(s) 247, 686, 1012, 1351, 1408
BtsI GCAGTG 1 cut(s) 92
BtsIMutI CAGTG 3 cut(s) 92, 498, 783
Cac8I GCNNGC 1 cut(s) 16
CaiI CAGNNNCTG 1 cut(s) 1652
CciI TCATGA 1 cut(s) 1119
Cfr13I GGNCC 5 cut(s) 417, 750, 1358, 1442, 1548
Csp6I GTAC 4 cut(s) 380, 578, 778, 898
CviAII CATG 9 cut(s) 33, 56, 829, 1120, 1285, 1303, 1432, 1601, 1685
CviQI GTAC 4 cut(s) 380, 578, 778, 898
DdeI CTNAG 8 cut(s) 402, 425, 609, 786, 1089, 1371, 1391, 1661
DpnI GATC 9 cut(s) 38, 99, 550, 891, 1101, 1291, 1427, 1572, 1616
DpnII GATC 9 cut(s) 36, 97, 548, 889, 1099, 1289, 1425, 1570, 1614
Eam1104I CTCTTC 2 cut(s) 1188, 1377
EarI CTCTTC 2 cut(s) 1188, 1377
Eco105I TACGTA 1 cut(s) 581
Eco130I CCWWGG 3 cut(s) 102, 534, 1051
Eco147I AGGCCT 1 cut(s) 801
Eco47I GGWCC 3 cut(s) 417, 750, 1548
Eco57I CTGAAG 1 cut(s) 1629
Eco88I CYCGRG 1 cut(s) 929
EcoNI CCTNNNNNAGG 1 cut(s) 630
EcoO109I RGGNCCY 1 cut(s) 1548
EcoRI GAATTC 1 cut(s) 1159
EcoRII CCWGG 1 cut(s) 555
EcoT14I CCWWGG 3 cut(s) 102, 534, 1051
ErhI CCWWGG 3 cut(s) 102, 534, 1051
FaeI CATG 9 cut(s) 36, 59, 832, 1123, 1288, 1306, 1435, 1604, 1688
FalI AAGNNNNNCTT 2 cut(s) 653, 685
FaqI GGGAC 2 cut(s) 899, 1561
FatI CATG 9 cut(s) 32, 55, 828, 1119, 1284, 1302, 1431, 1600, 1684
FbaI TGATCA 1 cut(s) 1570
FblI GTMKAC 1 cut(s) 74
Fnu4HI GCNGC 5 cut(s) 948, 951, 1094, 1170, 1452
FokI GGATG 5 cut(s) 234, 693, 1019, 1358, 1395
Fsp4HI GCNGC 5 cut(s) 948, 951, 1094, 1170, 1452
FspBI CTAG 1 cut(s) 803
GluI GCNGC 5 cut(s) 948, 951, 1094, 1170, 1452
HaeIII GGCC 4 cut(s) 801, 870, 1359, 1443
HapII CCGG 2 cut(s) 1212, 1233
Hin1II CATG 9 cut(s) 36, 59, 832, 1123, 1288, 1306, 1435, 1604, 1688
HincII GTYRAC 2 cut(s) 6, 75
HindII GTYRAC 2 cut(s) 6, 75
HindIII AAGCTT 2 cut(s) 12, 171
HinfI GANTC 4 cut(s) 466, 960, 1035, 1073
HpaI GTTAAC 1 cut(s) 6
HpaII CCGG 2 cut(s) 1212, 1233
HphI GGTGA 6 cut(s) 383, 401, 523, 604, 1067, 1627
Hpy166II GTNNAC 5 cut(s) 6, 75, 380, 750, 1519
Hpy188I TCNGA 4 cut(s) 256, 366, 630, 1034
Hpy188III TCNNGA 5 cut(s) 140, 738, 1103, 1120, 1506
Hpy8I GTNNAC 5 cut(s) 6, 75, 380, 750, 1519
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 7 cut(s) 155, 176, 202, 206, 265, 281, 327
HpyCH4III ACNGT 4 cut(s) 260, 371, 1111, 1654
HpyCH4IV ACGT 3 cut(s) 235, 382, 580
HpyF3I CTNAG 8 cut(s) 402, 425, 609, 786, 1089, 1371, 1391, 1661
HpySE526I ACGT 3 cut(s) 235, 382, 580
Hsp92II CATG 9 cut(s) 36, 59, 832, 1123, 1288, 1306, 1435, 1604, 1688
KflI GGGWCCC 1 cut(s) 1548
Ksp22I TGATCA 1 cut(s) 1570
KspAI GTTAAC 1 cut(s) 6
Kzo9I GATC 9 cut(s) 36, 97, 548, 889, 1099, 1289, 1425, 1570, 1614
Lsp1109I GCAGC 5 cut(s) 959, 962, 1105, 1181, 1463
LweI GCATC 3 cut(s) 256, 576, 743
MaeI CTAG 1 cut(s) 803
MaeII ACGT 3 cut(s) 235, 382, 580
MaeIII GTNAC 6 cut(s) 597, 604, 663, 1250, 1465, 1666
MalI GATC 9 cut(s) 38, 99, 550, 891, 1101, 1291, 1427, 1572, 1616
MboI GATC 9 cut(s) 36, 97, 548, 889, 1099, 1289, 1425, 1570, 1614
MboII GAAGA 7 cut(s) 206, 871, 1163, 1195, 1205, 1394, 1635
MfeI CAATTG 1 cut(s) 1689
MflI RGATCY 4 cut(s) 36, 97, 548, 1289
MluCI AATT 9 cut(s) 143, 445, 724, 836, 964, 996, 1159, 1639, 1689
MmeI TCCRAC 3 cut(s) 146, 486, 576
MroXI GAANNNNTTC 1 cut(s) 964
MseI TTAA 7 cut(s) 5, 147, 357, 744, 915, 1419, 1461
MslI CAYNNNNRTG 3 cut(s) 491, 679, 1112
MspA1I CMGCKG 1 cut(s) 1454
MspI CCGG 2 cut(s) 1212, 1233
MspR9I CCNGG 2 cut(s) 557, 1212
MunI CAATTG 1 cut(s) 1689
Mva1269I GAATGC 1 cut(s) 1066
MvaI CCWGG 1 cut(s) 557
NciI CCSGG 1 cut(s) 1212
NdeII GATC 9 cut(s) 36, 97, 548, 889, 1099, 1289, 1425, 1570, 1614
NlaIII CATG 9 cut(s) 36, 59, 832, 1123, 1288, 1306, 1435, 1604, 1688
NlaIV GGNNCC 3 cut(s) 61, 1549, 1550
NmuCI GTSAC 2 cut(s) 663, 1250
NspI RCATGY 2 cut(s) 1306, 1688
OliI CACNNNNGTG 1 cut(s) 491
PagI TCATGA 1 cut(s) 1119
PceI AGGCCT 1 cut(s) 801
PciI ACATGT 1 cut(s) 1302
PctI GAATGC 1 cut(s) 1066
PdmI GAANNNNTTC 1 cut(s) 964
PfeI GAWTC 4 cut(s) 466, 960, 1035, 1073
PflFI GACNNNGTC 1 cut(s) 512
PfoI TCCNGGA 1 cut(s) 1210
PkrI GCNGC 5 cut(s) 949, 952, 1095, 1171, 1453
Ppu21I YACGTR 3 cut(s) 236, 383, 581
PpuMI RGGWCCY 1 cut(s) 1548
PscI ACATGT 1 cut(s) 1302
Psp5II RGGWCCY 1 cut(s) 1548
Psp6I CCWGG 1 cut(s) 555
PspGI CCWGG 1 cut(s) 555
PspN4I GGNNCC 3 cut(s) 61, 1549, 1550
PspPI GGNCC 5 cut(s) 417, 750, 1358, 1442, 1548
PspPPI RGGWCCY 1 cut(s) 1548
PstI CTGCAG 2 cut(s) 1072, 1417
PstNI CAGNNNCTG 1 cut(s) 1652
PsuI RGATCY 4 cut(s) 36, 97, 548, 1289
PsyI GACNNNGTC 1 cut(s) 512
PvuII CAGCTG 1 cut(s) 1454
RsaI GTAC 4 cut(s) 381, 579, 779, 899
RsaNI GTAC 4 cut(s) 380, 578, 778, 898
RseI CAYNNNNRTG 3 cut(s) 491, 679, 1112
SalI GTCGAC 1 cut(s) 73
SaqAI TTAA 7 cut(s) 5, 147, 357, 744, 915, 1419, 1461
SatI GCNGC 5 cut(s) 948, 951, 1094, 1170, 1452
Sau3AI GATC 9 cut(s) 36, 97, 548, 889, 1099, 1289, 1425, 1570, 1614
Sau96I GGNCC 5 cut(s) 417, 750, 1358, 1442, 1548
ScrFI CCNGG 2 cut(s) 557, 1212
SfaNI GCATC 3 cut(s) 256, 576, 743
SfcI CTRYAG 3 cut(s) 298, 1068, 1413
SinI GGWCC 3 cut(s) 417, 750, 1548
SmiMI CAYNNNNRTG 3 cut(s) 491, 679, 1112
SnaBI TACGTA 1 cut(s) 581
Sse9I AATT 9 cut(s) 143, 445, 724, 836, 964, 996, 1159, 1639, 1689
SseBI AGGCCT 1 cut(s) 801
SspMI CTAG 1 cut(s) 803
StuI AGGCCT 1 cut(s) 801
StyD4I CCNGG 2 cut(s) 555, 1210
StyI CCWWGG 3 cut(s) 102, 534, 1051
TaaI ACNGT 4 cut(s) 260, 371, 1111, 1654
TaiI ACGT 3 cut(s) 238, 385, 583
TaqI TCGA 3 cut(s) 74, 206, 282
TasI AATT 9 cut(s) 143, 445, 724, 836, 964, 996, 1159, 1639, 1689
TfiI GAWTC 4 cut(s) 466, 960, 1035, 1073
Tru1I TTAA 7 cut(s) 5, 147, 357, 744, 915, 1419, 1461
Tru9I TTAA 7 cut(s) 5, 147, 357, 744, 915, 1419, 1461
TscAI CASTG 3 cut(s) 92, 498, 790
TseFI GTSAC 2 cut(s) 663, 1250
TseI GCWGC 5 cut(s) 947, 950, 1093, 1169, 1451
Tsp45I GTSAC 2 cut(s) 663, 1250
TspRI CASTG 3 cut(s) 92, 498, 790
Tth111I GACNNNGTC 1 cut(s) 512
VpaK11BI GGWCC 3 cut(s) 417, 750, 1548
XagI CCTNNNNNAGG 1 cut(s) 630
XapI RAATTY 4 cut(s) 143, 445, 836, 1159
XceI RCATGY 2 cut(s) 1306, 1688
XmiI GTMKAC 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 964
XspI CTAG 1 cut(s) 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.