Rh6AG054900

Glycosyl hydrolase family 10 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010160
Physical Location & Seq
Reverse (-)
8086986 .. 8089645
2660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG054900.1

Sequence Viewer

Length: 1695 bp
ATGTTTAAAGAAGCTTGCACCAATCTATTGCTTGCCTGCATTTTTCTGTATTTTGGGGATGGGACCTCTGCTTCTGCCTACAACTACACCACTACAACAAAGTGCTTGAAAGAGCCCCTAGAAGCTTTATATGGAGGAGGGATTATAGTTAACCCAGTTAATCACAACATTGAAGGATGGAAAGCATTTGGACAAGGAAAAATCAGAGAACGAATATCAAAAACTGCATCAAACAGTTTCTCGCAGAAGGTTCAAGTTGAGCAAGGGAAAATCTATACTCTTTCTGCTTCTGTCCAAGTCAGTGAAGGAAGTGAGATTGTAGCTGTTGTTTTTAAGTTCCCCACCGGCGAAAACATACGTGGTGGTGATGTGGTAGCTGAGCATGGTTGCTGGACCCTGCTAAAAGGTGGCATAGTAGCAAATTTCACAAGCTTGGTTGAGATTTTTTTTGAGAGCAAAAATACATTAGTGGAAATATGGGTGGACAATGTCTCGTTACAGCCATTCACCAAGAAGGAATGGAAATCACACCAAGACAAAAGCATTATTGAGGGACGAAAGAGTAAGGTGAGGTTGCAGGTAACTCAGGCAAATAAAGCTCCTCTTACAGGTGCTAAAGTGTCCATCAAGCAGACGAAGTCGGACTTCCCATTCGGATGTTGCATGAACCATAACATCCTCACAAGCACCGATTACCAGAATTGGTTTGCATCAAGATTTAGATATACCACTTTCACCAATGAGATGAAGTGGTACAGCACTGAGAAAATAGAAGGCCAAGAAAACTATACTATTGCAGATGGCATGGTGAAATTTTCCAAAGAGAATGGCATATCTATTAGAGGTCACAATGTCTTCTGGGATGATCCAAAAATGCAGCCTGGCTGGGTGAACAGTACCATTTCCCCCGAGAAACTACGAACAGCATCAGCACAGAGAATCAATTCAGTGGTTTCTAGATACAGAGGACAACTAATTGCTTGGGATGTAATGAATGAGAATCTTCACTTCCGATTCTTTGAGGATAAACTTGGCGAGAACGCTTCTGCAGCATTCTACTACACAGCTCAACAGCTTGATCCTGGCACAATGATGTTCATGAATGAGTATAATACCATGGAATATAGTGGCGACGAGGCATCAAGTCCAGCCAACTACAGGAAGAAACTTGAAGAGATCCTGTCATATCCTGGAAATGCTAATCTGACAGCAGGAATAGGTTTGCAAGGTCACTTTGGTTCTGGTCAGCCAAATCTTGCTTACATGAGATCTGTTTTAGACTTTTTAGGTGCAACTGGATATCCAGTATGGCTTACAGAAGTGAGTGTGGGAGTAGGCCCATATCAGGCCCAGTACTTGGAAGAGGTACTAAGGGAGGGTTATTCGCATCCTGCAGTCCAAGGGATCATCATGTTCGTAGGTCCAATCACAGCTGGTTTTAATGAAACCACTCTTGTAGATAAGAACTTCAACAACACTCCATCAGGAGATGTTGTGGATAAGCTGATTGCCGAGTGGAAAACGGGGCCTCTGGAAATGACAACTAATGGTCAGGGATTTATAGACGTTTCCTTGTTTCATGGAGATTATGAGGTTACAGCTGAAGACAATGACACCAATTCCTCAGCTACACTAAGCTTTAAGGTTACAAAAGATGAACCACAGACAAGTGTTCAAGTTCAGATTGATACTTGA

Protein Analysis

564

Amino Acids

62.83

Weight (kDa)

5.48

Isoelectric Point (pI)

25.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_10 PF00331 212 - 464 1.6e-37 Glycosyl hydrolase family 10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14690 AT4G33810 AT4G33810 AT4G33810 AT4G33810 AT4G33810 AT4G33820
fragaria_vesca FvH4_2g03791
malus_domestica MD05G1100900.v1.1
prunus_persica Prupe.8G145600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0252821
rosa_laevigata RLG00000015063
rosa_multiflora Rmu_co8501457.1_g000001
rosa_roxburghii Rroxscaffold_7G00212400
rosa_rugosa Rorug05G0538800 Rorug05G0538800
rosa_samantha Rh6AG054900 Rh6BG048900 Rh6CG047800 Rh6DG043300
rosa_wichuraiana Rw6G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 568
AccB7I CCANNNNNTGG 1 cut(s) 1357
AclWI GGATC 4 cut(s) 860, 1073, 1171, 1412
AcsI RAATTY 2 cut(s) 421, 812
AcuI CTGAAG 1 cut(s) 1623
AfaI GTAC 4 cut(s) 755, 898, 1355, 1368
AfiI CCNNNNNNNGG 4 cut(s) 608, 1158, 1345, 1357
AgsI TTSAA 6 cut(s) 109, 173, 254, 1172, 1471, 1676
AjnI CCWGG 3 cut(s) 880, 1081, 1189
Alw26I GTCTC 1 cut(s) 496
AlwI GGATC 4 cut(s) 860, 1073, 1171, 1412
Ama87I CYCGRG 1 cut(s) 908
AoxI GGCC 4 cut(s) 775, 1336, 1347, 1526
ApeKI GCWGC 2 cut(s) 877, 1049
ApoI RAATTY 2 cut(s) 421, 812
ArsI GACNNNNNNTTYG 2 cut(s) 635, 667
Asp700I GAANNNNTTC 1 cut(s) 943
AspS9I GGNCC 6 cut(s) 63, 393, 1337, 1348, 1421, 1526
AsuHPI GGTGA 6 cut(s) 377, 499, 580, 727, 820, 901
AvaI CYCGRG 1 cut(s) 908
AvaII GGWCC 3 cut(s) 63, 393, 1421
BanII GRGCYC 1 cut(s) 117
BbsI GAAGAC 2 cut(s) 847, 1611
BbvCI CCTCAGC 1 cut(s) 1624
BbvI GCAGC 2 cut(s) 889, 1061
BccI CCATC 5 cut(s) 53, 171, 632, 794, 1489
BciT130I CCWGG 3 cut(s) 882, 1083, 1191
BcoDI GTCTC 1 cut(s) 496
BfaI CTAG 2 cut(s) 119, 957
BfmI CTRYAG 3 cut(s) 1047, 1156, 1392
BfuAI ACCTGC 1 cut(s) 568
BglII AGATCT 1 cut(s) 1268
BisI GCNGC 2 cut(s) 878, 1050
BlpI GCTNAGC 1 cut(s) 378
BlsI GCNGC 2 cut(s) 879, 1051
BmcAI AGTACT 1 cut(s) 1355
Bme1390I CCNGG 3 cut(s) 882, 1083, 1191
Bme18I GGWCC 3 cut(s) 63, 393, 1421
BmeT110I CYCGRG 1 cut(s) 908
BmgT120I GGNCC 6 cut(s) 63, 393, 1337, 1348, 1421, 1526
BmiI GGNNCC 3 cut(s) 64, 395, 1527
BmrFI CCNGG 3 cut(s) 882, 1083, 1191
BmrI ACTGGG 2 cut(s) 149, 1345
BmsI GCATC 5 cut(s) 236, 719, 935, 1148, 1396
BmuI ACTGGG 2 cut(s) 149, 1345
BpiI GAAGAC 2 cut(s) 847, 1611
Bpu10I CCTNAGC 1 cut(s) 1624
Bpu1102I GCTNAGC 1 cut(s) 378
BsaAI YACGTR 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 1116, 1399
BsaXI ACNNNNNCTCC 2 cut(s) 1479, 1509
Bsc4I CCNNNNNNNGG 4 cut(s) 608, 1158, 1345, 1357
Bse118I RCCGGY 1 cut(s) 344
Bse1I ACTGG 4 cut(s) 155, 1300, 1304, 1351
BseBI CCWGG 3 cut(s) 882, 1083, 1191
BseDI CCNNGG 2 cut(s) 1116, 1399
BseGI GGATG 7 cut(s) 64, 182, 662, 675, 868, 991, 1387
BseLI CCNNNNNNNGG 4 cut(s) 608, 1158, 1345, 1357
BseMII CTCAG 4 cut(s) 369, 599, 753, 1638
BseNI ACTGG 4 cut(s) 155, 1300, 1304, 1351
BseRI GAGGAG 2 cut(s) 150, 591
BseXI GCAGC 2 cut(s) 889, 1061
BseYI CCCAGC 1 cut(s) 885
BshFI GGCC 4 cut(s) 777, 1338, 1349, 1528
BsiHKCI CYCGRG 1 cut(s) 908
BsiSI CCGG 1 cut(s) 345
BslFI GGGAC 2 cut(s) 76, 567
BslI CCNNNNNNNGG 4 cut(s) 608, 1158, 1345, 1357
BsmAI GTCTC 1 cut(s) 496
BsmFI GGGAC 2 cut(s) 76, 567
BsmI GAATGC 1 cut(s) 1052
BsnI GGCC 4 cut(s) 777, 1338, 1349, 1528
BsoBI CYCGRG 1 cut(s) 908
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 5 cut(s) 865, 1078, 1176, 1268, 1404
Bsp1720I GCTNAGC 1 cut(s) 378
Bsp19I CCATGG 1 cut(s) 1116
BspANI GGCC 4 cut(s) 777, 1338, 1349, 1528
BspCNI CTCAG 4 cut(s) 370, 598, 754, 1637
BspHI TCATGA 1 cut(s) 1098
BspLI GGNNCC 3 cut(s) 64, 395, 1527
BspMAI CTGCAG 2 cut(s) 1051, 1396
BspMI ACCTGC 1 cut(s) 568
BspPI GGATC 4 cut(s) 860, 1073, 1171, 1412
BsrFI RCCGGY 1 cut(s) 344
BsrI ACTGG 4 cut(s) 155, 1300, 1304, 1351
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 2 cut(s) 1116, 1399
BssMI GATC 5 cut(s) 865, 1078, 1176, 1268, 1404
BssT1I CCWWGG 2 cut(s) 1116, 1399
Bst2UI CCWGG 3 cut(s) 882, 1083, 1191
Bst4CI ACNGT 2 cut(s) 236, 896
Bst6I CTCTTC 2 cut(s) 1167, 1356
BstBAI YACGTR 1 cut(s) 359
BstC8I GCNNGC 3 cut(s) 16, 33, 37
BstDEI CTNAG 6 cut(s) 378, 585, 762, 1370, 1624, 1634
BstDSI CCRYGG 1 cut(s) 1116
BstENI CCTNNNNNAGG 1 cut(s) 606
BstF5I GGATG 7 cut(s) 64, 182, 662, 675, 868, 991, 1387
BstKTI GATC 5 cut(s) 868, 1081, 1179, 1271, 1407
BstMAI GTCTC 1 cut(s) 496
BstMBI GATC 5 cut(s) 865, 1078, 1176, 1268, 1404
BstMWI GCNNNNNNNGC 2 cut(s) 596, 1049
BstNI CCWGG 3 cut(s) 882, 1083, 1191
BstSCI CCNGG 3 cut(s) 880, 1081, 1189
BstSFI CTRYAG 3 cut(s) 1047, 1156, 1392
BstV1I GCAGC 2 cut(s) 889, 1061
BstV2I GAAGAC 2 cut(s) 847, 1611
BstX2I RGATCY 2 cut(s) 1176, 1268
BstYI RGATCY 2 cut(s) 1176, 1268
BsuRI GGCC 4 cut(s) 777, 1338, 1349, 1528
BtgI CCRYGG 1 cut(s) 1116
BtsCI GGATG 7 cut(s) 64, 182, 662, 675, 868, 991, 1387
BtsIMutI CAGTG 3 cut(s) 307, 759, 954
BveI ACCTGC 1 cut(s) 568
Cac8I GCNNGC 3 cut(s) 16, 33, 37
CciI TCATGA 1 cut(s) 1098
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 6 cut(s) 63, 393, 1337, 1348, 1421, 1526
Csp6I GTAC 4 cut(s) 754, 897, 1354, 1367
CviAII CATG 8 cut(s) 383, 664, 805, 1099, 1117, 1264, 1411, 1580
CviQI GTAC 4 cut(s) 754, 897, 1354, 1367
DdeI CTNAG 6 cut(s) 378, 585, 762, 1370, 1624, 1634
DpnI GATC 5 cut(s) 867, 1080, 1178, 1270, 1406
DpnII GATC 5 cut(s) 865, 1078, 1176, 1268, 1404
DraI TTTAAA 1 cut(s) 7
Eam1104I CTCTTC 2 cut(s) 1167, 1356
EarI CTCTTC 2 cut(s) 1167, 1356
Eco130I CCWWGG 2 cut(s) 1116, 1399
Eco24I GRGCYC 1 cut(s) 117
Eco32I GATATC 1 cut(s) 1301
Eco47I GGWCC 3 cut(s) 63, 393, 1421
Eco57I CTGAAG 1 cut(s) 1623
Eco88I CYCGRG 1 cut(s) 908
EcoNI CCTNNNNNAGG 1 cut(s) 606
EcoO109I RGGNCCY 2 cut(s) 63, 1526
EcoRII CCWGG 3 cut(s) 880, 1081, 1189
EcoRV GATATC 1 cut(s) 1301
EcoT14I CCWWGG 2 cut(s) 1116, 1399
EcoT38I GRGCYC 1 cut(s) 117
ErhI CCWWGG 2 cut(s) 1116, 1399
FaeI CATG 8 cut(s) 386, 667, 808, 1102, 1120, 1267, 1414, 1583
FalI AAGNNNNNCTT 4 cut(s) 588, 620, 629, 661
FaqI GGGAC 2 cut(s) 76, 567
FatI CATG 8 cut(s) 382, 663, 804, 1098, 1116, 1263, 1410, 1579
Fnu4HI GCNGC 2 cut(s) 878, 1050
FokI GGATG 7 cut(s) 71, 189, 662, 669, 875, 998, 1374
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 2 cut(s) 878, 1050
FspBI CTAG 2 cut(s) 119, 957
GluI GCNGC 2 cut(s) 878, 1050
GsaI CCCAGC 1 cut(s) 889
HaeIII GGCC 4 cut(s) 777, 1338, 1349, 1528
HapII CCGG 1 cut(s) 345
Hin1II CATG 8 cut(s) 386, 667, 808, 1102, 1120, 1267, 1414, 1583
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HindIII AAGCTT 4 cut(s) 12, 123, 430, 1636
HinfI GANTC 3 cut(s) 939, 1000, 1014
HpaI GTTAAC 1 cut(s) 151
HpaII CCGG 1 cut(s) 345
HphI GGTGA 6 cut(s) 377, 499, 580, 727, 820, 901
Hpy166II GTNNAC 3 cut(s) 151, 484, 892
Hpy188I TCNGA 6 cut(s) 206, 643, 656, 1013, 1206, 1683
Hpy188III TCNNGA 5 cut(s) 714, 957, 1099, 1485, 1532
Hpy8I GTNNAC 3 cut(s) 151, 484, 892
Hpy99I CGWCG 1 cut(s) 1136
HpyAV CCTTC 5 cut(s) 167, 241, 299, 508, 767
HpyCH4III ACNGT 2 cut(s) 236, 896
HpyCH4IV ACGT 2 cut(s) 358, 1566
HpyF10VI GCNNNNNNNGC 2 cut(s) 596, 1049
HpyF3I CTNAG 6 cut(s) 378, 585, 762, 1370, 1624, 1634
HpySE526I ACGT 2 cut(s) 358, 1566
Hsp92II CATG 8 cut(s) 386, 667, 808, 1102, 1120, 1267, 1414, 1583
KspAI GTTAAC 1 cut(s) 151
Kzo9I GATC 5 cut(s) 865, 1078, 1176, 1268, 1404
LmnI GCTCC 1 cut(s) 604
Lsp1109I GCAGC 2 cut(s) 889, 1061
LweI GCATC 5 cut(s) 236, 719, 935, 1148, 1396
MaeI CTAG 2 cut(s) 119, 957
MaeII ACGT 2 cut(s) 358, 1566
MaeIII GTNAC 6 cut(s) 495, 580, 845, 1229, 1594, 1645
MalI GATC 5 cut(s) 867, 1080, 1178, 1270, 1406
MboI GATC 5 cut(s) 865, 1078, 1176, 1268, 1404
MboII GAAGA 6 cut(s) 847, 995, 1174, 1184, 1373, 1616
MflI RGATCY 2 cut(s) 1176, 1268
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 6 cut(s) 421, 700, 812, 943, 975, 1618
MmeI TCCRAC 1 cut(s) 621
MroXI GAANNNNTTC 1 cut(s) 943
MseI TTAA 6 cut(s) 6, 150, 159, 333, 1440, 1641
MslI CAYNNNNRTG 2 cut(s) 655, 1091
MspA1I CMGCKG 2 cut(s) 1433, 1601
MspI CCGG 1 cut(s) 345
MspR9I CCNGG 3 cut(s) 882, 1083, 1191
Mva1269I GAATGC 1 cut(s) 1052
MvaI CCWGG 3 cut(s) 882, 1083, 1191
MwoI GCNNNNNNNGC 2 cut(s) 596, 1049
NcoI CCATGG 1 cut(s) 1116
NdeII GATC 5 cut(s) 865, 1078, 1176, 1268, 1404
NlaIII CATG 8 cut(s) 386, 667, 808, 1102, 1120, 1267, 1414, 1583
NlaIV GGNNCC 3 cut(s) 64, 395, 1527
NmeAIII GCCGAG 1 cut(s) 1537
NmuCI GTSAC 2 cut(s) 845, 1229
PagI TCATGA 1 cut(s) 1098
PctI GAATGC 1 cut(s) 1052
PdmI GAANNNNTTC 1 cut(s) 943
PfeI GAWTC 3 cut(s) 939, 1000, 1014
PflFI GACNNNGTC 2 cut(s) 488, 637
PflMI CCANNNNNTGG 1 cut(s) 1357
PfoI TCCNGGA 1 cut(s) 1189
PkrI GCNGC 2 cut(s) 879, 1051
Ppu21I YACGTR 1 cut(s) 359
PpuMI RGGWCCY 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 63
Psp6I CCWGG 3 cut(s) 880, 1081, 1189
PspFI CCCAGC 1 cut(s) 885
PspGI CCWGG 3 cut(s) 880, 1081, 1189
PspN4I GGNNCC 3 cut(s) 64, 395, 1527
PspPI GGNCC 6 cut(s) 63, 393, 1337, 1348, 1421, 1526
PspPPI RGGWCCY 1 cut(s) 63
PstI CTGCAG 2 cut(s) 1051, 1396
PsuI RGATCY 2 cut(s) 1176, 1268
PsyI GACNNNGTC 2 cut(s) 488, 637
PvuII CAGCTG 2 cut(s) 1433, 1601
RsaI GTAC 4 cut(s) 755, 898, 1355, 1368
RsaNI GTAC 4 cut(s) 754, 897, 1354, 1367
RseI CAYNNNNRTG 2 cut(s) 655, 1091
SaqAI TTAA 6 cut(s) 6, 150, 159, 333, 1440, 1641
SatI GCNGC 2 cut(s) 878, 1050
Sau3AI GATC 5 cut(s) 865, 1078, 1176, 1268, 1404
Sau96I GGNCC 6 cut(s) 63, 393, 1337, 1348, 1421, 1526
ScaI AGTACT 1 cut(s) 1355
ScrFI CCNGG 3 cut(s) 882, 1083, 1191
SduI GDGCHC 1 cut(s) 117
SfaNI GCATC 5 cut(s) 236, 719, 935, 1148, 1396
SfcI CTRYAG 3 cut(s) 1047, 1156, 1392
SgrAI CRCCGGYG 1 cut(s) 344
SinI GGWCC 3 cut(s) 63, 393, 1421
SmiMI CAYNNNNRTG 2 cut(s) 655, 1091
Sse9I AATT 6 cut(s) 421, 700, 812, 943, 975, 1618
SspMI CTAG 2 cut(s) 119, 957
StyD4I CCNGG 3 cut(s) 880, 1081, 1189
StyI CCWWGG 2 cut(s) 1116, 1399
TaaI ACNGT 2 cut(s) 236, 896
TaiI ACGT 2 cut(s) 361, 1569
TasI AATT 6 cut(s) 421, 700, 812, 943, 975, 1618
TatI WGTACW 1 cut(s) 1353
TfiI GAWTC 3 cut(s) 939, 1000, 1014
Tru1I TTAA 6 cut(s) 6, 150, 159, 333, 1440, 1641
Tru9I TTAA 6 cut(s) 6, 150, 159, 333, 1440, 1641
TscAI CASTG 3 cut(s) 307, 766, 954
TseFI GTSAC 2 cut(s) 845, 1229
TseI GCWGC 2 cut(s) 877, 1049
Tsp45I GTSAC 2 cut(s) 845, 1229
TspDTI ATGAA 8 cut(s) 680, 761, 1007, 1087, 1115, 1458, 1568, 1671
TspRI CASTG 3 cut(s) 307, 766, 954
Tth111I GACNNNGTC 2 cut(s) 488, 637
Van91I CCANNNNNTGG 1 cut(s) 1357
VpaK11BI GGWCC 3 cut(s) 63, 393, 1421
XagI CCTNNNNNAGG 1 cut(s) 606
XapI RAATTY 2 cut(s) 421, 812
XbaI TCTAGA 1 cut(s) 956
XmnI GAANNNNTTC 1 cut(s) 943
XspI CTAG 2 cut(s) 119, 957
ZrmI AGTACT 1 cut(s) 1355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.