Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0010160

Physical Location & Seq

Genomic Coordinates Reverse (-)

8135131 .. 8137775

Gene Structure 2645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G004960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1656 bp

ATGTTTAAAGAAGCTTGCACCAATCTATTGCTTGCCTGCATTTTTCTGTATTTTGGGGATGGGACCTCTGCTTCTGCCTACAACTACACGACTACAACAAAGTGCTTGAAAGAACCCCTAGAAGCTTTATATGGAGGAGGGATTATAGTTAACCCAGTTAATCACAAAATTGAAGGTTGGAAAGCATTTGGACAAGAAAAAATCAGAGAACGAATATCAGAAACTGCATCAAACAGTTTCTCCCAGAAGGTTCAAGTTGAGCAAGGAAAAATCTATACTCTTTCTGCTTCTGTCCAAGTCAGTGAAGGAAGTGAGATTGTAGCTGTTGTTTTTAAGTTCCCCACGGGCGAAAGCATACGTGGTGGTGATGTGGTAGCTGAGCATGGTTGCTGGACCCTGCTAAAAGGTGGCATAGTAGCAAATTTCACAAGCTTGGTTGAGATTTTTTTTGAGCAAAATACATTAGCGGAAATATGGGTGGACAATGTCTCGTTACAACCATTCACCAAGGAGGAATGGAAATCACACCAAGACAAAAGCATTATTGAGGGACGAAAGAGTAAGGTGAGGTTGCAGGTAACTCAGGCAAATAAAGCTCCTCTTACAGGTGCTAAAGTGTCCATCAAGCAGACGAAGTCGGACTTCCCATTCGGATGTTGCATGAACCATAACATCCTCACAAGCACCGATTACCAGAATTGGTTTGCATCAAGATTTAGATATACCACTTTCACCAATGAGATGAAGTGGTACAGCACTGAGAAAATAGAAGGCCAAGAAAACTATACTATTGCAGATGGCATGGTGAAATTTTCCAAAGAGAATGGCATATCTATTAGAGGTCACAATGTCTTCTGGGATGATCCAAAAATGCAGCCTGGCTGGGTTAACACACAGAGAATCAATTCAGTGGTTTCTAGATACAGTGGACAACTAATTGCTTGGGATGTAATGAATGAGAATCTTCACTTCCGATTCTTTGAGGATAAACTTGGCGAGAACGCTTCTGCAGAATTCTACTACACAGCTCAACAGCTTGATCCTGGCACAATGATGTTCATGAATGAGTATAATACCATGGAGTATAGTGGCGACGAGGCATCAAGTCCAGCCAACTACAAGAAGAAACTTGAAGAGATCCTGTCATATCCTGGAAATGCTAATCTGACAGCAGGAATAGGTTTGCAAGGTCACTTTGGTTCTGGTCAGCCAAATCTTGCTTACATGAGATCTGTTTTAGACTTTTTAGGTGCAACTGGATATCCAATATGGCTTACAGAAGTGAGTGTGGGAGTAGGCCCATATCAGGCCCAGTACTTGGAAGAGGTACTAAGGGAGGGTTATTCGCATCCTGCGGTCCAAGGGATCATCATGTTCGTAGGTCCAATCACAGCCGGTTTTAATGAAACTACTCTTGTAGATAAGAACTTCAACAACACTCCATCAGGAGATGTTGTGGACAAGCTGATTGCCGAGTGGAAAACGGGGCCTCTGGAAATGACAAGTGATGGTCAGGGATTTATAGATGTTTCCTTGTTTCATGGAGATTATGAGGTTACAGCTGAAGACAATGTCACCAATTCCTCAGCTACACTAAGCTTTAAGGTTACAAAAGATGAACTACAGGCATTTGTTCAAGTTCAGATTGATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0031176 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0045491 GO:0045493 GO:0071554 GO:0071704 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_4_9 Glyco_hydro_10

Protein Analysis

551

Amino Acids

61.53

Weight (kDa)

5.03

Isoelectric Point (pI)

25.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_10	PF00331	211 - 451	3.5e-32	Glycosyl hydrolase family 10

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14690 AT4G33810 AT4G33810 AT4G33810 AT4G33810 AT4G33810 AT4G33820
fragaria_vesca	FvH4_2g03791
malus_domestica	MD05G1100900.v1.1
prunus_persica	Prupe.8G145600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0252821
rosa_laevigata	RLG00000015063
rosa_multiflora	Rmu_co8501457.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212400
rosa_rugosa	Rorug05G0538800 Rorug05G0538800
rosa_samantha	Rh6AG054900 Rh6BG048900 Rh6CG047800 Rh6DG043300
rosa_wichuraiana	Rw6G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	565
AccB7I	CCANNNNNTGG	1 cut(s)	1318
AciI	CCGC	2 cut(s)	467, 1355
AclWI	GGATC	4 cut(s)	857, 1034, 1132, 1373
AcsI	RAATTY	3 cut(s)	421, 809, 1013
AcuI	CTGAAG	1 cut(s)	1584
AfaI	GTAC	3 cut(s)	752, 1316, 1329
AfiI	CCNNNNNNNGG	3 cut(s)	605, 1306, 1318
AgsI	TTSAA	6 cut(s)	109, 173, 254, 1133, 1432, 1637
AjnI	CCWGG	3 cut(s)	877, 1042, 1150
Alw26I	GTCTC	1 cut(s)	493
AlwI	GGATC	4 cut(s)	857, 1034, 1132, 1373
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	4 cut(s)	772, 1297, 1308, 1487
ApeKI	GCWGC	1 cut(s)	874
ApoI	RAATTY	3 cut(s)	421, 809, 1013
ArsI	GACNNNNNNTTYG	2 cut(s)	632, 664
Asp700I	GAANNNNTTC	1 cut(s)	904
AspS9I	GGNCC	7 cut(s)	63, 393, 1298, 1309, 1357, 1382, 1487
AsuHPI	GGTGA	6 cut(s)	377, 496, 577, 724, 817, 1567
AvaII	GGWCC	4 cut(s)	63, 393, 1357, 1382
BbsI	GAAGAC	2 cut(s)	844, 1572
BbvCI	CCTCAGC	1 cut(s)	1585
BbvI	GCAGC	1 cut(s)	886
BccI	CCATC	5 cut(s)	53, 629, 791, 1450, 1502
BciT130I	CCWGG	3 cut(s)	879, 1044, 1152
BcoDI	GTCTC	1 cut(s)	493
BfaI	CTAG	2 cut(s)	119, 918
BfmI	CTRYAG	2 cut(s)	1008, 1622
BfuAI	ACCTGC	1 cut(s)	565
BglII	AGATCT	1 cut(s)	1229
BisI	GCNGC	1 cut(s)	875
BlpI	GCTNAGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	876
BmcAI	AGTACT	1 cut(s)	1316
Bme1390I	CCNGG	3 cut(s)	879, 1044, 1152
Bme18I	GGWCC	4 cut(s)	63, 393, 1357, 1382
BmgT120I	GGNCC	7 cut(s)	63, 393, 1298, 1309, 1357, 1382, 1487
BmiI	GGNNCC	3 cut(s)	64, 395, 1488
BmrFI	CCNGG	3 cut(s)	879, 1044, 1152
BmrI	ACTGGG	2 cut(s)	149, 1306
BmsI	GCATC	4 cut(s)	236, 716, 1109, 1357
BmuI	ACTGGG	2 cut(s)	149, 1306
BpiI	GAAGAC	2 cut(s)	844, 1572
Bpu10I	CCTNAGC	1 cut(s)	1585
Bpu1102I	GCTNAGC	1 cut(s)	378
BsaAI	YACGTR	1 cut(s)	359
BsaJI	CCNNGG	4 cut(s)	342, 507, 1077, 1360
BsaXI	ACNNNNNCTCC	4 cut(s)	224, 254, 1440, 1470
Bsc4I	CCNNNNNNNGG	3 cut(s)	605, 1306, 1318
Bse118I	RCCGGY	1 cut(s)	1394
Bse1I	ACTGG	3 cut(s)	155, 1261, 1312
BseBI	CCWGG	3 cut(s)	879, 1044, 1152
BseDI	CCNNGG	4 cut(s)	342, 507, 1077, 1360
BseGI	GGATG	6 cut(s)	64, 659, 672, 865, 952, 1348
BseLI	CCNNNNNNNGG	3 cut(s)	605, 1306, 1318
BseMII	CTCAG	4 cut(s)	369, 596, 750, 1599
BseNI	ACTGG	3 cut(s)	155, 1261, 1312
BseRI	GAGGAG	2 cut(s)	150, 588
BseXI	GCAGC	1 cut(s)	886
BseYI	CCCAGC	1 cut(s)	882
BshFI	GGCC	4 cut(s)	774, 1299, 1310, 1489
BsiSI	CCGG	1 cut(s)	1395
BslFI	GGGAC	2 cut(s)	76, 564
BslI	CCNNNNNNNGG	3 cut(s)	605, 1306, 1318
BsmAI	GTCTC	1 cut(s)	493
BsmFI	GGGAC	2 cut(s)	76, 564
BsnI	GGCC	4 cut(s)	774, 1299, 1310, 1489
Bsp143I	GATC	5 cut(s)	862, 1039, 1137, 1229, 1365
Bsp1720I	GCTNAGC	1 cut(s)	378
Bsp19I	CCATGG	1 cut(s)	1077
BspACI	CCGC	2 cut(s)	467, 1355
BspANI	GGCC	4 cut(s)	774, 1299, 1310, 1489
BspCNI	CTCAG	4 cut(s)	370, 595, 751, 1598
BspHI	TCATGA	1 cut(s)	1059
BspLI	GGNNCC	3 cut(s)	64, 395, 1488
BspMAI	CTGCAG	1 cut(s)	1012
BspMI	ACCTGC	1 cut(s)	565
BspPI	GGATC	4 cut(s)	857, 1034, 1132, 1373
BsrFI	RCCGGY	1 cut(s)	1394
BsrI	ACTGG	3 cut(s)	155, 1261, 1312
BssAI	RCCGGY	1 cut(s)	1394
BssECI	CCNNGG	4 cut(s)	342, 507, 1077, 1360
BssMI	GATC	5 cut(s)	862, 1039, 1137, 1229, 1365
BssT1I	CCWWGG	3 cut(s)	507, 1077, 1360
Bst2UI	CCWGG	3 cut(s)	879, 1044, 1152
Bst4CI	ACNGT	2 cut(s)	236, 926
Bst6I	CTCTTC	2 cut(s)	1128, 1317
BstBAI	YACGTR	1 cut(s)	359
BstC8I	GCNNGC	3 cut(s)	16, 33, 37
BstDEI	CTNAG	6 cut(s)	378, 582, 759, 1331, 1585, 1595
BstDSI	CCRYGG	2 cut(s)	342, 1077
BstENI	CCTNNNNNAGG	1 cut(s)	603
BstF5I	GGATG	6 cut(s)	64, 659, 672, 865, 952, 1348
BstKTI	GATC	5 cut(s)	865, 1042, 1140, 1232, 1368
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	5 cut(s)	862, 1039, 1137, 1229, 1365
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstNI	CCWGG	3 cut(s)	879, 1044, 1152
BstSCI	CCNGG	3 cut(s)	877, 1042, 1150
BstSFI	CTRYAG	2 cut(s)	1008, 1622
BstV1I	GCAGC	1 cut(s)	886
BstV2I	GAAGAC	2 cut(s)	844, 1572
BstX2I	RGATCY	2 cut(s)	1137, 1229
BstYI	RGATCY	2 cut(s)	1137, 1229
BsuRI	GGCC	4 cut(s)	774, 1299, 1310, 1489
BtgI	CCRYGG	2 cut(s)	342, 1077
BtsCI	GGATG	6 cut(s)	64, 659, 672, 865, 952, 1348
BtsIMutI	CAGTG	4 cut(s)	307, 756, 915, 931
BveI	ACCTGC	1 cut(s)	565
Cac8I	GCNNGC	3 cut(s)	16, 33, 37
CaiI	CAGNNNCTG	1 cut(s)	224
CciI	TCATGA	1 cut(s)	1059
Cfr10I	RCCGGY	1 cut(s)	1394
Cfr13I	GGNCC	7 cut(s)	63, 393, 1298, 1309, 1357, 1382, 1487
Csp6I	GTAC	3 cut(s)	751, 1315, 1328
CviAII	CATG	8 cut(s)	383, 661, 802, 1060, 1078, 1225, 1372, 1541
CviQI	GTAC	3 cut(s)	751, 1315, 1328
DdeI	CTNAG	6 cut(s)	378, 582, 759, 1331, 1585, 1595
DpnI	GATC	5 cut(s)	864, 1041, 1139, 1231, 1367
DpnII	GATC	5 cut(s)	862, 1039, 1137, 1229, 1365
DraI	TTTAAA	1 cut(s)	7
Eam1104I	CTCTTC	2 cut(s)	1128, 1317
EarI	CTCTTC	2 cut(s)	1128, 1317
Eco130I	CCWWGG	3 cut(s)	507, 1077, 1360
Eco32I	GATATC	1 cut(s)	1262
Eco47I	GGWCC	4 cut(s)	63, 393, 1357, 1382
Eco57I	CTGAAG	1 cut(s)	1584
EcoNI	CCTNNNNNAGG	1 cut(s)	603
EcoO109I	RGGNCCY	2 cut(s)	63, 1487
EcoRI	GAATTC	1 cut(s)	1013
EcoRII	CCWGG	3 cut(s)	877, 1042, 1150
EcoRV	GATATC	1 cut(s)	1262
EcoT14I	CCWWGG	3 cut(s)	507, 1077, 1360
ErhI	CCWWGG	3 cut(s)	507, 1077, 1360
FaeI	CATG	8 cut(s)	386, 664, 805, 1063, 1081, 1228, 1375, 1544
FalI	AAGNNNNNCTT	4 cut(s)	585, 617, 626, 658
FaqI	GGGAC	2 cut(s)	76, 564
FatI	CATG	8 cut(s)	382, 660, 801, 1059, 1077, 1224, 1371, 1540
Fnu4HI	GCNGC	1 cut(s)	875
FokI	GGATG	6 cut(s)	71, 659, 666, 872, 959, 1335
Fsp4HI	GCNGC	1 cut(s)	875
FspBI	CTAG	2 cut(s)	119, 918
GluI	GCNGC	1 cut(s)	875
GsaI	CCCAGC	1 cut(s)	886
HaeIII	GGCC	4 cut(s)	774, 1299, 1310, 1489
HapII	CCGG	1 cut(s)	1395
Hin1II	CATG	8 cut(s)	386, 664, 805, 1063, 1081, 1228, 1375, 1544
HincII	GTYRAC	2 cut(s)	151, 889
HindII	GTYRAC	2 cut(s)	151, 889
HindIII	AAGCTT	4 cut(s)	12, 123, 430, 1597
HinfI	GANTC	3 cut(s)	900, 961, 975
HpaI	GTTAAC	2 cut(s)	151, 889
HpaII	CCGG	1 cut(s)	1395
HphI	GGTGA	6 cut(s)	377, 496, 577, 724, 817, 1567
Hpy166II	GTNNAC	5 cut(s)	151, 481, 889, 929, 1459
Hpy188I	TCNGA	7 cut(s)	206, 220, 640, 653, 974, 1167, 1644
Hpy188III	TCNNGA	5 cut(s)	711, 918, 1060, 1446, 1493
Hpy8I	GTNNAC	5 cut(s)	151, 481, 889, 929, 1459
Hpy99I	CGWCG	1 cut(s)	1097
HpyAV	CCTTC	4 cut(s)	167, 241, 299, 764
HpyCH4III	ACNGT	2 cut(s)	236, 926
HpyCH4IV	ACGT	1 cut(s)	358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	6 cut(s)	378, 582, 759, 1331, 1585, 1595
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	8 cut(s)	386, 664, 805, 1063, 1081, 1228, 1375, 1544
KspAI	GTTAAC	2 cut(s)	151, 889
Kzo9I	GATC	5 cut(s)	862, 1039, 1137, 1229, 1365
LmnI	GCTCC	1 cut(s)	601
Lsp1109I	GCAGC	1 cut(s)	886
LweI	GCATC	4 cut(s)	236, 716, 1109, 1357
MaeI	CTAG	2 cut(s)	119, 918
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	7 cut(s)	492, 577, 842, 1190, 1555, 1573, 1606
MalI	GATC	5 cut(s)	864, 1041, 1139, 1231, 1367
MboI	GATC	5 cut(s)	862, 1039, 1137, 1229, 1365
MboII	GAAGA	6 cut(s)	844, 956, 1135, 1145, 1334, 1577
MflI	RGATCY	2 cut(s)	1137, 1229
MluCI	AATT	8 cut(s)	168, 421, 697, 809, 904, 936, 1013, 1579
MmeI	TCCRAC	2 cut(s)	158, 618
MroXI	GAANNNNTTC	1 cut(s)	904
MseI	TTAA	7 cut(s)	6, 150, 159, 333, 888, 1401, 1602
MslI	CAYNNNNRTG	2 cut(s)	652, 1052
MspA1I	CMGCKG	1 cut(s)	1562
MspI	CCGG	1 cut(s)	1395
MspR9I	CCNGG	3 cut(s)	879, 1044, 1152
MvaI	CCWGG	3 cut(s)	879, 1044, 1152
MwoI	GCNNNNNNNGC	1 cut(s)	593
NcoI	CCATGG	1 cut(s)	1077
NdeII	GATC	5 cut(s)	862, 1039, 1137, 1229, 1365
NlaIII	CATG	8 cut(s)	386, 664, 805, 1063, 1081, 1228, 1375, 1544
NlaIV	GGNNCC	3 cut(s)	64, 395, 1488
NmeAIII	GCCGAG	1 cut(s)	1498
NmuCI	GTSAC	3 cut(s)	842, 1190, 1573
PagI	TCATGA	1 cut(s)	1059
PdmI	GAANNNNTTC	1 cut(s)	904
PfeI	GAWTC	3 cut(s)	900, 961, 975
PflFI	GACNNNGTC	3 cut(s)	485, 634, 1571
PflMI	CCANNNNNTGG	1 cut(s)	1318
PfoI	TCCNGGA	1 cut(s)	1150
PkrI	GCNGC	1 cut(s)	876
Ppu21I	YACGTR	1 cut(s)	359
PpuMI	RGGWCCY	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	63
Psp6I	CCWGG	3 cut(s)	877, 1042, 1150
PspFI	CCCAGC	1 cut(s)	882
PspGI	CCWGG	3 cut(s)	877, 1042, 1150
PspN4I	GGNNCC	3 cut(s)	64, 395, 1488
PspPI	GGNCC	7 cut(s)	63, 393, 1298, 1309, 1357, 1382, 1487
PspPPI	RGGWCCY	1 cut(s)	63
PstI	CTGCAG	1 cut(s)	1012
PstNI	CAGNNNCTG	1 cut(s)	224
PsuI	RGATCY	2 cut(s)	1137, 1229
PsyI	GACNNNGTC	3 cut(s)	485, 634, 1571
PvuII	CAGCTG	1 cut(s)	1562
RsaI	GTAC	3 cut(s)	752, 1316, 1329
RsaNI	GTAC	3 cut(s)	751, 1315, 1328
RseI	CAYNNNNRTG	2 cut(s)	652, 1052
SaqAI	TTAA	7 cut(s)	6, 150, 159, 333, 888, 1401, 1602
SatI	GCNGC	1 cut(s)	875
Sau3AI	GATC	5 cut(s)	862, 1039, 1137, 1229, 1365
Sau96I	GGNCC	7 cut(s)	63, 393, 1298, 1309, 1357, 1382, 1487
ScaI	AGTACT	1 cut(s)	1316
ScrFI	CCNGG	3 cut(s)	879, 1044, 1152
SfaNI	GCATC	4 cut(s)	236, 716, 1109, 1357
SfcI	CTRYAG	2 cut(s)	1008, 1622
SinI	GGWCC	4 cut(s)	63, 393, 1357, 1382
SmiMI	CAYNNNNRTG	2 cut(s)	652, 1052
Sse9I	AATT	8 cut(s)	168, 421, 697, 809, 904, 936, 1013, 1579
SsiI	CCGC	2 cut(s)	467, 1355
SspMI	CTAG	2 cut(s)	119, 918
StyD4I	CCNGG	3 cut(s)	877, 1042, 1150
StyI	CCWWGG	3 cut(s)	507, 1077, 1360
TaaI	ACNGT	2 cut(s)	236, 926
TaiI	ACGT	1 cut(s)	361
TasI	AATT	8 cut(s)	168, 421, 697, 809, 904, 936, 1013, 1579
TatI	WGTACW	1 cut(s)	1314
TfiI	GAWTC	3 cut(s)	900, 961, 975
Tru1I	TTAA	7 cut(s)	6, 150, 159, 333, 888, 1401, 1602
Tru9I	TTAA	7 cut(s)	6, 150, 159, 333, 888, 1401, 1602
TscAI	CASTG	4 cut(s)	307, 763, 915, 931
TseFI	GTSAC	3 cut(s)	842, 1190, 1573
TseI	GCWGC	1 cut(s)	874
Tsp45I	GTSAC	3 cut(s)	842, 1190, 1573
TspDTI	ATGAA	8 cut(s)	677, 758, 968, 1048, 1076, 1419, 1529, 1632
TspRI	CASTG	4 cut(s)	307, 763, 915, 931
Tth111I	GACNNNGTC	3 cut(s)	485, 634, 1571
Van91I	CCANNNNNTGG	1 cut(s)	1318
VpaK11BI	GGWCC	4 cut(s)	63, 393, 1357, 1382
XagI	CCTNNNNNAGG	1 cut(s)	603
XapI	RAATTY	3 cut(s)	421, 809, 1013
XbaI	TCTAGA	1 cut(s)	917
XmnI	GAANNNNTTC	1 cut(s)	904
XspI	CTAG	2 cut(s)	119, 918
ZrmI	AGTACT	1 cut(s)	1316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.