AT2G15270

Protein of unknown function (DUF1168)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012334
Physical Location & Seq
Forward (+)
6637831 .. 6639429
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G15270.2

Sequence Viewer

Length: 585 bp
ATGTCGTCCGGGAAGCCAAAGCAAGGCGACACACGATTGGTGGTTGCTGCCACTACGGCGTCGGCATTGATGGAAGCGAAGAAGGCTGATCACGGAGGATCTTCGTCTATCGTTGAGTATAAACCGCCGGTGATGCTTGAAGATGAAGAAGATCTAGAAGTAAAGCTCCGACGTATCCTTGAGAACGTTCCTGTTCGTGTTAGTAATACTTCTGGAAGTTCCGCTGGTTCTGGTTCTGGAGATTTCCATCAGTACCGGCAAATGAGGCGGAGAGAACAAGACCGACTAACAAGGATGGATATTGACTATAACAAGCGGTTAAAAATGGCAGAGTTTACTATAAGAAGAGAAGAGAAACAGAAAGCTGCAGAGGAAAAAACATCGAAGAAGCGTTTGAAACGCCAAAAGAAGAAGCAGAAGAAACAGGAGAAGAAGCAAAAACCAAACACTACTGAGGAAGAAGTAAAGCAACCGAGAGTAGGAGAAATATCATCTGACGAAGGTGAAGATGAAGTAGAAGAAGAGTCTGTGCTAGAACCTTTACGTCCAATGTTTAATATCAAGTTCCAAGAGAACCGTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1168

Protein Analysis

194

Amino Acids

22.34

Weight (kDa)

9.35

Isoelectric Point (pI)

72.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1168 PF06658 55 - 173 8.1e-28 Protein of unknown function (DUF1168)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 125, 222, 268, 316
AclI AACGTT 1 cut(s) 186
AclWI GGATC 1 cut(s) 106
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 2 cut(s) 23, 479
AgsI TTSAA 2 cut(s) 140, 397
AluBI AGCT 2 cut(s) 166, 365
AluI AGCT 2 cut(s) 166, 365
AlwI GGATC 1 cut(s) 106
ApeKI GCWGC 2 cut(s) 47, 365
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 2 cut(s) 142, 515
BbvI GCAGC 2 cut(s) 34, 352
BccI CCATC 3 cut(s) 64, 255, 289
BceAI ACGGC 1 cut(s) 72
BciVI GTATCC 1 cut(s) 185
BclI TGATCA 1 cut(s) 88
BcnI CCSGG 1 cut(s) 10
BfaI CTAG 2 cut(s) 155, 533
BfmI CTRYAG 1 cut(s) 366
BfuI GTATCC 1 cut(s) 185
BglI GCCNNNNNGGC 1 cut(s) 56
BglII AGATCT 1 cut(s) 151
BisI GCNGC 2 cut(s) 48, 366
BlsI GCNGC 2 cut(s) 49, 367
Bme1390I CCNGG 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 10
BmsI GCATC 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 10
BsaBI GATNNNNATC 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 59
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 479
Bse118I RCCGGY 2 cut(s) 127, 255
Bse8I GATNNNNATC 1 cut(s) 246
BseGI GGATG 1 cut(s) 300
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 23, 479
BseMII CTCAG 1 cut(s) 444
BseXI GCAGC 2 cut(s) 34, 352
BsiSI CCGG 3 cut(s) 9, 128, 256
BslI CCNNNNNNNGG 2 cut(s) 23, 479
Bsp143I GATC 3 cut(s) 88, 98, 151
BspACI CCGC 4 cut(s) 125, 222, 268, 316
BspCNI CTCAG 1 cut(s) 445
BspMAI CTGCAG 1 cut(s) 370
BspPI GGATC 1 cut(s) 106
BsrFI RCCGGY 2 cut(s) 127, 255
BssAI RCCGGY 2 cut(s) 127, 255
BssMI GATC 3 cut(s) 88, 98, 151
BssNI GRCGYC 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 578
Bst6I CTCTTC 3 cut(s) 340, 345, 516
BstACI GRCGYC 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 453
BstF5I GGATG 1 cut(s) 300
BstKTI GATC 3 cut(s) 91, 101, 154
BstMBI GATC 3 cut(s) 88, 98, 151
BstMWI GCNNNNNNNGC 4 cut(s) 56, 83, 133, 265
BstSCI CCNGG 1 cut(s) 8
BstSFI CTRYAG 1 cut(s) 366
BstV1I GCAGC 2 cut(s) 34, 352
BstX2I RGATCY 2 cut(s) 98, 151
BstYI RGATCY 2 cut(s) 98, 151
BsuI GTATCC 1 cut(s) 185
BtsCI GGATG 1 cut(s) 300
Cfr10I RCCGGY 2 cut(s) 127, 255
CseI GACGC 1 cut(s) 48
Csp6I GTAC 1 cut(s) 253
CviJI RGCY 4 cut(s) 16, 86, 166, 365
CviKI_1 RGCY 4 cut(s) 16, 86, 166, 365
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 453
DpnI GATC 3 cut(s) 90, 100, 153
DpnII GATC 3 cut(s) 88, 98, 151
Eam1104I CTCTTC 3 cut(s) 340, 345, 516
EarI CTCTTC 3 cut(s) 340, 345, 516
EciI GGCGGA 1 cut(s) 283
FaiI YATR 4 cut(s) 120, 309, 341, 583
FbaI TGATCA 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 48, 366
FokI GGATG 1 cut(s) 307
Fsp4HI GCNGC 2 cut(s) 48, 366
FspBI CTAG 2 cut(s) 155, 533
GluI GCNGC 2 cut(s) 48, 366
GsuI CTGGAG 1 cut(s) 258
HapII CCGG 3 cut(s) 9, 128, 256
HgaI GACGC 1 cut(s) 48
Hin1I GRCGYC 1 cut(s) 59
HinfI GANTC 1 cut(s) 524
HpaII CCGG 3 cut(s) 9, 128, 256
HphI GGTGA 2 cut(s) 142, 515
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 2 cut(s) 170, 496
Hpy188III TCNNGA 3 cut(s) 155, 213, 237
Hpy8I GTNNAC 1 cut(s) 336
Hpy99I CGWCG 2 cut(s) 64, 174
HpyAV CCTTC 2 cut(s) 76, 494
HpyCH4III ACNGT 1 cut(s) 578
HpyCH4IV ACGT 3 cut(s) 172, 186, 544
HpyCH4V TGCA 1 cut(s) 368
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 83, 133, 265
HpyF3I CTNAG 1 cut(s) 453
HpySE526I ACGT 3 cut(s) 172, 186, 544
Hsp92I GRCGYC 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 3 cut(s) 88, 98, 151
LmnI GCTCC 1 cut(s) 171
LpnPI CCDG 9 cut(s) 22, 141, 198, 204, 210, 216, 222, 269, 410
Lsp1109I GCAGC 2 cut(s) 34, 352
LweI GCATC 1 cut(s) 123
MaeI CTAG 2 cut(s) 155, 533
MaeII ACGT 3 cut(s) 172, 186, 544
MalI GATC 3 cut(s) 90, 100, 153
MboI GATC 3 cut(s) 88, 98, 151
MflI RGATCY 2 cut(s) 98, 151
MlyI GAGTC 1 cut(s) 533
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 4 cut(s) 89, 258, 364, 448
MseI TTAA 2 cut(s) 320, 555
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 3 cut(s) 9, 128, 256
MspR9I CCNGG 1 cut(s) 10
MwoI GCNNNNNNNGC 4 cut(s) 56, 83, 133, 265
NciI CCSGG 1 cut(s) 10
NdeII GATC 3 cut(s) 88, 98, 151
PfoI TCCNGGA 1 cut(s) 8
PkrI GCNGC 2 cut(s) 49, 367
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
Psp1406I AACGTT 1 cut(s) 186
PstI CTGCAG 1 cut(s) 370
PsuI RGATCY 2 cut(s) 98, 151
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SaqAI TTAA 2 cut(s) 320, 555
SatI GCNGC 2 cut(s) 48, 366
Sau3AI GATC 3 cut(s) 88, 98, 151
SchI GAGTC 1 cut(s) 533
ScrFI CCNGG 1 cut(s) 10
SetI ASST 7 cut(s) 168, 175, 189, 367, 505, 541, 547
SfaNI GCATC 1 cut(s) 123
SfcI CTRYAG 1 cut(s) 366
SgrAI CRCCGGYG 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SsiI CCGC 4 cut(s) 125, 222, 268, 316
SspMI CTAG 2 cut(s) 155, 533
StyD4I CCNGG 1 cut(s) 8
TaaI ACNGT 1 cut(s) 578
TaiI ACGT 3 cut(s) 175, 189, 547
TaqI TCGA 1 cut(s) 383
TaqII GACCGA 1 cut(s) 297
Tru1I TTAA 2 cut(s) 320, 555
Tru9I TTAA 2 cut(s) 320, 555
TseI GCWGC 2 cut(s) 47, 365
TspDTI ATGAA 3 cut(s) 159, 525, 570
TspGWI ACGGA 1 cut(s) 108
XbaI TCTAGA 1 cut(s) 154
XspI CTAG 2 cut(s) 155, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.