Rorug05G0557500
MYB Family

PRKR-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001796
Physical Location & Seq
Reverse (-)
74682560 .. 74687825
5266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0557500.1

Sequence Viewer

Length: 3399 bp
ATGTTGCCTTCCAAGACTAAACAACTCTCCCAAATTTCCCACACAATTTCAAAGCTCAGAGCTTTTCATGGTGGTTCCTCTCCAAATGTCAAAAGCAATCTCAAAGAAAATGGCTTCAGAAACAGAGCTCATAGAACCACCCAAACCTCAGGTTCAGATATGGAGAAAAGCATATACTCAATTCTCACTATAGACCGATGGGAGTCACTGAACCACATGGAGTATAAGTTGGCTTCTCTTAGACCAGTGCATGGAAGATTGGCTCTGAAATTCTTCAACTGGGTCATTGAACAGCCTGGTTTGGAACTCAATCATCTCACTCATATTCTCTCTGTTACAACTCATATACTTGCTAGAGCTAGAATGTATGACTCTGCCAGGTTAATTTTGGGGCATTTAGCACAATTGGGTGCTGACTCGAAATCTGTTTTTGGTGCTTTGATGGATACTTACCCTCTTTGCAATTCAAACCCTTCAGTATTTGACCTTTTGATTAGAGTTTACTTGAGGGAAGGGATGGTTGGTAGTGCTGTAGAGACTTTTTATTTCATGGGTTTAAGGGGGTTTAGGCCGTCGGGTTATACTTGTAATATGATCCTAGCTTCATTGGCAAAGGACCAGAGGGCTGCATCGGTATGGTCTTTTTTCAAAGAAATGCTGGCTAAGAATGTTTGCCCTGATGTTAGTACTTTTAATATATTGATTAGTGTTCTATGTGTGGAAGGGAAGCTTAATAAAGCTAGTTATCTTTTGAAGAAGATGGAAAAGAGTGGCTATGTGCCTAATGCAGTTACTTATAATACTTTGCTCAATTGGTACTGCAAGAAGAGGAGGTATAAAGCAGCTAATGATCTTATTGATCATATGGGTTCTAAGGGTATTGAAGCAGATGTGTGTACATATAACATGCTTATTGAGGATTTGTGTAGAAACAGTAGTAGTGCAAAAGGTTATTTGCTGTTGAAGAAGATGAGAAGGAAGAAGTTATCTCCTAATCAGGTTACCTACAATATCCTTATTAACGGGTTTGTCAAGGAGGGGAAAATTGGTGTTGCCACCAAGGTTTTTGATGAGATGTCAACGTTTAATCTTTCACCAAATTGGGTTACTTATAATGCTCTGATTGACGGGCTCTGTCGAAAGGGTAAGCTTGAAGAAGCTTTCAGACTCTTGGACATGATGGAAGCAGTGGGACTAAAACCTAATGAAGTCAGCTATGGTGCTGTTTTAAATGGGCTGTGCAAGCATGGTAAGTTTAATTTAGCAAGAAGTACTTTTCAGAAAATGCGATTGTATGGGATTGTTAGTGGTTGCATTACGTATACATCAATCATGGATGGGTTATGCAAAAATGGGTTGCTTGATGAAGCCGTGCATGTGCATAGTATGATGGTCCAGGATGGTGTGAATCCTGATATCATAGCATTTTCAGTGCTCATAACTGGATTCTGCAGAGCTGGGAGGATGAAACATGTAAGAGAAATAATGTGTAAAGTGTATAGAGCTGGCCTTACACCGAATAAATTTATATATTCTACCTTAATCAACTACTCTTGCAAGATGGGCAACATAATCGAAGCATTAAAGATCTATGCAGTTATGAATCGTAACGGTCACACTGCCGATCATTTCACATGTAACATATTGATTACTGCGCTTTGTGAAGCTGGGAACCTTGGTGCTGCAGAAGATTTCATGCGTCATATGAGCAGCATGGGTCTGGTTGCCAATTCCAGTTCTTTTGATTGTATGATAAGTGGGTATGGAAACATGGGTGATGCGTTAGGAGCGTTTTCTATGTTTGATGAATTGATTAGATTAGGTCATCACCCTAGTCCATTTACTTATGGAAGTATAATGAAAGGGCTATGCAGGGGTGGTCATTTGGAGGAGGCAAGGAAATTTTTGAAGAAACTCCACAGCATTCCATCTGCTGTTGATACTGTTGTGTACAATACAATACTTTCTGAGACATGTAAGTCAGGGAATTTGCAAGAGGCTGTTGTCCTTCTTGATGAGATGGTTGAGAATAATGTGCTGCCCGATACTCATACGTACAGTAGCCTTCTTGCTGGGTTATGCAGGAAGGGAAAAGTGGTTGCTGCCATCCTATTGTTTGGGAGAGTTATGGAAAAAGGAATTTTGTCACCAAATCCCATAATGTACACCTGTCTAGTTGATGGCCTTTTCAAGATTGGGCAACCTAAGGCTGCTTCATATCTATTTGAAGAGATGGAGAACAAAGGTCTGTACTCGGATACTATTGCTCTTAATGTAATGATGGATGGATACTCAAGGATGGGAAAAATGATGAAGGCAAATGATCTCTTTTCAACTATGGGGGGCCGAAGATTGTCCCCCAATTTGGCTTCTTGTAACATTCTGTTGCATGGATACTCAAAGAAACAAGACTTATTGGCATGCTCACTGGTGTACAAAAACATGATCAGGGTCAAATTATTGCCTGACAAATTGACATGTCACTCTCTTATTCTTGGATTATGTGAGTCAGGTAAGGTGGATATTGGCCACAAAATGTTGCATAAGATGATTATGGAAGGTGCTGTACCTGATCTTTTAACATTCAATTTGCTTATTAGCAAGTATTCTGAGATTGGGAAGATAGGGATGGCATTTGAGCTAGTGAGTGTCATGAATCTGTTAGGAGTTTCCGCTAATACAGACACTCATGGAGCAATCTTAAATGGACTGTTCAGAATTTCAGCTTTCCGCGCATCCCGTAGTCTTCTGTATGAAATGTTGGCCGAAGGATTTACTCCCAAGTATACACATTATTTCACTATAATTAATGGTATGTGTAGAGTGGGAGATATACAAGGAGCATTTGAGCTAAAAGATCAGATGGAAGCTCTTGGTGTCACTTCCTGTGACATTGCTGAGAGTGCTATGGTTAGAGGGCTTGCGAAATGTGGGAAGGTTGAAGAAGCGATGCTGGTTCTTGATCGCATGCTTCGAATGCAACTTGTTCCAACTACTGCTACTTTTACTACTTTGATGCATAAGTTCTGCAAAGAAGCCAACCTTGCAGAGGCTCTAAGATTGAGGGGTGTAATGGAACACTGTGGTGTGCCACTCGATGTTGCTGCTTTTAATGTTCTCATTTCAGGCCTTTGTACTAATGGTGATGTTGTGGCTGCATTTGAGCTGTACAAGGAGATGAAACGAAGTGGTCTCTTGCCCAACACAACAACGTACACTCTTCTCCTTGCTGCTGTTTCCTCTGGTAATAATCATATTGAAGGTGAAGAGATTTTGGGAGATTTATTGGGAAAGGGGTTGATATCTGGAAATTTGGATGGAAGCACCTTAACACTGCATGACCAATTGAATGTTGCAATGGGAACATTAAACTCTTGGAGGTGCAATAAATGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1168

Protein Analysis

1132

Amino Acids

125.28

Weight (kDa)

8.97

Isoelectric Point (pI)

32.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 195 - 239 1.8e-09 PPR repeat family
PPR_long PF17177 205 - 340 1.1e-10 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 216 - 274 2.6e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 222 - 255 8.4e-10 PPR repeat
PPR_2 PF13041 226 - 270 8.7e-13 PPR repeat family
PPR_1 PF12854 258 - 289 3.8e-07 PPR repeat
PPR_2 PF13041 261 - 310 1.6e-16 PPR repeat family
PPR_3 PF13812 285 - 345 5.7e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 297 - 345 2e-12 PPR repeat family
PPR_long PF17177 312 - 418 2.1e-09 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 328 - 360 1.8e-10 PPR repeat
PPR_2 PF13041 331 - 380 1e-17 PPR repeat family
PPR PF01535 334 - 362 3.9e-06 PPR repeat
PPR_3 PF13812 354 - 411 1e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 363 - 395 6e-14 PPR repeat
PPR_2 PF13041 366 - 415 2.7e-17 PPR repeat family
PPR PF01535 369 - 398 5.5e-09 PPR repeat
PPR_1 PF12854 398 - 430 2.8e-06 PPR repeat
PPR_2 PF13041 401 - 450 1.9e-11 PPR repeat family
PPR_1 PF12854 435 - 464 1.8e-07 PPR repeat
PPR_2 PF13041 439 - 485 1.3e-12 PPR repeat family
PPR PF01535 439 - 469 3e-07 PPR repeat
PPR_3 PF13812 464 - 517 6e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 506 - 554 1.5e-10 PPR repeat family
PPR_2 PF13041 542 - 589 6.7e-08 PPR repeat family
TPR_24 PF23276 555 - 670 4.1e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 577 - 625 9.2e-09 PPR repeat family
PPR_1 PF12854 608 - 638 2.6e-06 PPR repeat
PPR_2 PF13041 647 - 695 6.4e-16 PPR repeat family
PPR_1 PF12854 647 - 675 5.5e-07 PPR repeat
PPR_1 PF12854 678 - 706 2.8e-06 PPR repeat
PPR_2 PF13041 753 - 801 1.2e-09 PPR repeat family
PPR_2 PF13041 787 - 835 3.4e-06 PPR repeat family
PPR_2 PF13041 857 - 905 3.3e-06 PPR repeat family
PPR_long PF17177 876 - 1013 1.1e-07 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 969 - 1060 3.7e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 969 - 1011 1.2e-07 PPR repeat family
PPR_2 PF13041 997 - 1045 5.4e-09 PPR repeat family
PPR_3 PF13812 1025 - 1079 1.9e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 1029 - 1061 1.1e-07 PPR repeat
PPR_2 PF13041 1033 - 1078 1e-14 PPR repeat family
PPR PF01535 1036 - 1065 2.7e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 798, 1113
AasI GACNNNNNNGTC 1 cut(s) 1978
AccB7I CCANNNNNTGG 1 cut(s) 251
AccI GTMKAC 2 cut(s) 1322, 2786
AccII CGCG 1 cut(s) 2733
AciI CCGC 2 cut(s) 2673, 2731
AclI AACGTT 1 cut(s) 1082
AclWI GGATC 1 cut(s) 589
AcoI YGGCCR 2 cut(s) 2527, 2763
AcsI RAATTY 8 cut(s) 33, 269, 1523, 1901, 1987, 2139, 2718, 3310
AcuI CTGAAG 2 cut(s) 100, 459
AfiI CCNNNNNNNGG 3 cut(s) 251, 2365, 3049
AflIII ACRYGT 4 cut(s) 1471, 1634, 1973, 2477
AjnI CCWGG 3 cut(s) 295, 377, 1395
AjuI GAANNNNNNNTTGG 2 cut(s) 504, 536
AleI CACNNNNGTG 1 cut(s) 3084
Alw21I GWGCWC 2 cut(s) 130, 1437
Alw26I GTCTC 3 cut(s) 530, 1964, 3197
AlwI GGATC 1 cut(s) 589
AoxI GGCC 7 cut(s) 569, 1507, 2182, 2344, 2527, 2763, 3127
ApoI RAATTY 8 cut(s) 33, 269, 1523, 1901, 1987, 2139, 2718, 3310
AseI ATTAAT 1 cut(s) 2808
Asp700I GAANNNNTTC 1 cut(s) 272
AspLEI GCGC 2 cut(s) 1657, 2735
AspS9I GGNCC 3 cut(s) 616, 1393, 2344
AsuHPI GGTGA 6 cut(s) 1086, 1787, 1820, 2139, 3155, 3275
AsuII TTCGAA 1 cut(s) 2974
AvaII GGWCC 2 cut(s) 616, 1393
AxyI CCTNAGG 2 cut(s) 148, 2205
BaeI ACNNNNGTAYC 2 cut(s) 1932, 1965
BalI TGGCCA 1 cut(s) 2529
BanII GRGCYC 2 cut(s) 130, 1134
BarI GAAGNNNNNNTAC 2 cut(s) 2550, 2582
BbsI GAAGAC 1 cut(s) 2738
Bbv12I GWGCWC 2 cut(s) 130, 1437
BceAI ACGGC 2 cut(s) 556, 1355
BcgI CGANNNNNNTGC 4 cut(s) 1555, 1589, 3086, 3120
BciT130I CCWGG 3 cut(s) 297, 379, 1397
BciVI GTATCC 4 cut(s) 439, 2251, 2282, 2387
BclI TGATCA 2 cut(s) 859, 2445
BcoDI GTCTC 3 cut(s) 530, 1964, 3197
BfaI CTAG 7 cut(s) 354, 360, 599, 741, 1833, 2174, 2642
BfmI CTRYAG 4 cut(s) 189, 531, 1450, 1683
BfuI GTATCC 4 cut(s) 439, 2251, 2282, 2387
BglII AGATCT 1 cut(s) 1587
BmcAI AGTACT 2 cut(s) 688, 1273
Bme1390I CCNGG 3 cut(s) 297, 379, 1397
Bme18I GGWCC 2 cut(s) 616, 1393
BmgT120I GGNCC 3 cut(s) 616, 1393, 2344
BmiI GGNNCC 3 cut(s) 76, 1673, 2345
BmrFI CCNGG 3 cut(s) 297, 379, 1397
BmrI ACTGGG 1 cut(s) 289
BmsI GCATC 5 cut(s) 638, 1768, 2744, 2940, 3006
BmuI ACTGGG 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 2738
Bpu14I TTCGAA 1 cut(s) 2974
BpuEI CTTGAG 2 cut(s) 526, 2278
BsaAI YACGTR 2 cut(s) 1320, 2055
BsaI GGTCTC 1 cut(s) 3197
BsaJI CCNNGG 2 cut(s) 1059, 1675
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 2365, 3049
Bse1I ACTGG 5 cut(s) 245, 284, 1447, 1734, 2433
Bse21I CCTNAGG 2 cut(s) 148, 2205
Bse3DI GCAATG 2 cut(s) 2892, 3363
BseBI CCWGG 3 cut(s) 297, 379, 1397
BseDI CCNNGG 2 cut(s) 1059, 1675
BseLI CCNNNNNNNGG 3 cut(s) 251, 2365, 3049
BseMI GCAATG 2 cut(s) 2892, 3363
BseMII CTCAG 5 cut(s) 70, 162, 1959, 2601, 2889
BseNI ACTGG 5 cut(s) 245, 284, 1447, 1734, 2433
BseRI GAGGAG 2 cut(s) 844, 1904
BseYI CCCAGC 3 cut(s) 1457, 1667, 2072
Bsh1236I CGCG 1 cut(s) 2733
BshFI GGCC 7 cut(s) 571, 1509, 2184, 2346, 2529, 2765, 3129
BsiHKAI GWGCWC 2 cut(s) 130, 1437
BslFI GGGAC 2 cut(s) 1206, 2341
BslI CCNNNNNNNGG 3 cut(s) 251, 2365, 3049
BsmAI GTCTC 3 cut(s) 530, 1964, 3197
BsmFI GGGAC 2 cut(s) 1206, 2341
BsmI GAATGC 2 cut(s) 1923, 2982
BsnI GGCC 7 cut(s) 571, 1509, 2184, 2346, 2529, 2765, 3129
Bso31I GGTCTC 1 cut(s) 3197
Bsp119I TTCGAA 1 cut(s) 2974
Bsp1286I GDGCHC 3 cut(s) 130, 1134, 1437
Bsp1407I TGTACA 5 cut(s) 896, 1950, 2163, 2433, 3168
BspACI CCGC 2 cut(s) 2673, 2731
BspANI GGCC 7 cut(s) 571, 1509, 2184, 2346, 2529, 2765, 3129
BspCNI CTCAG 5 cut(s) 69, 161, 1960, 2602, 2890
BspFNI CGCG 1 cut(s) 2733
BspHI TCATGA 1 cut(s) 2652
BspLI GGNNCC 3 cut(s) 76, 1673, 2345
BspMAI CTGCAG 2 cut(s) 1454, 1687
BspPI GGATC 1 cut(s) 589
BspT104I TTCGAA 1 cut(s) 2974
BspTNI GGTCTC 1 cut(s) 3197
BsrDI GCAATG 2 cut(s) 2892, 3363
BsrGI TGTACA 5 cut(s) 896, 1950, 2163, 2433, 3168
BsrI ACTGG 5 cut(s) 245, 284, 1447, 1734, 2433
BssECI CCNNGG 2 cut(s) 1059, 1675
BssNAI GTATAC 2 cut(s) 1323, 2787
BssT1I CCWWGG 2 cut(s) 1059, 1675
Bst1107I GTATAC 2 cut(s) 1323, 2787
Bst2UI CCWGG 3 cut(s) 297, 379, 1397
Bst4CI ACNGT 6 cut(s) 935, 1613, 1945, 2060, 2712, 3083
Bst6I CTCTTC 4 cut(s) 821, 2223, 3225, 3261
BstAUI TGTACA 5 cut(s) 896, 1950, 2163, 2433, 3168
BstBAI YACGTR 2 cut(s) 1320, 2055
BstBI TTCGAA 1 cut(s) 2974
BstC8I GCNNGC 6 cut(s) 660, 1244, 1507, 2422, 2922, 2969
BstEII GGTNACC 1 cut(s) 1000
BstENI CCTNNNNNAGG 1 cut(s) 3047
BstFNI CGCG 1 cut(s) 2733
BstHHI GCGC 2 cut(s) 1657, 2735
BstMAI GTCTC 3 cut(s) 530, 1964, 3197
BstMWI GCNNNNNNNGC 8 cut(s) 608, 1243, 1563, 1787, 2732, 2903, 2977, 3044
BstNI CCWGG 3 cut(s) 297, 379, 1397
BstNSI RCATGY 8 cut(s) 910, 1379, 1475, 1638, 1977, 2424, 2481, 2971
BstPI GGTNACC 1 cut(s) 1000
BstSCI CCNGG 3 cut(s) 295, 377, 1395
BstSFI CTRYAG 4 cut(s) 189, 531, 1450, 1683
BstSNI TACGTA 2 cut(s) 1320, 2055
BstUI CGCG 1 cut(s) 2733
BstV2I GAAGAC 1 cut(s) 2738
BstX2I RGATCY 1 cut(s) 1587
BstYI RGATCY 1 cut(s) 1587
BstZ17I GTATAC 2 cut(s) 1323, 2787
Bsu36I CCTNAGG 2 cut(s) 148, 2205
BsuI GTATCC 4 cut(s) 439, 2251, 2282, 2387
BsuRI GGCC 7 cut(s) 571, 1509, 2184, 2346, 2529, 2765, 3129
BtgZI GCGATG 1 cut(s) 2963
BtsI GCAGTG 3 cut(s) 1194, 1617, 3332
BtsIMutI CAGTG 8 cut(s) 206, 252, 1194, 1437, 1617, 2426, 3079, 3332
Cac8I GCNNGC 6 cut(s) 660, 1244, 1507, 2422, 2922, 2969
CciI TCATGA 1 cut(s) 2652
CfoI GCGC 2 cut(s) 1657, 2735
Cfr13I GGNCC 3 cut(s) 616, 1393, 2344
CseI GACGC 1 cut(s) 1688
DraI TTTAAA 1 cut(s) 1230
DrdI GACNNNNNNGTC 1 cut(s) 1978
DseDI GACNNNNNNGTC 1 cut(s) 1978
EaeI YGGCCR 2 cut(s) 2527, 2763
Eam1104I CTCTTC 4 cut(s) 821, 2223, 3225, 3261
EarI CTCTTC 4 cut(s) 821, 2223, 3225, 3261
Ecl136II GAGCTC 1 cut(s) 128
Eco105I TACGTA 2 cut(s) 1320, 2055
Eco130I CCWWGG 2 cut(s) 1059, 1675
Eco147I AGGCCT 1 cut(s) 3129
Eco24I GRGCYC 2 cut(s) 130, 1134
Eco31I GGTCTC 1 cut(s) 3197
Eco32I GATATC 2 cut(s) 1417, 3303
Eco47I GGWCC 2 cut(s) 616, 1393
Eco53kI GAGCTC 1 cut(s) 128
Eco57I CTGAAG 2 cut(s) 100, 459
Eco81I CCTNAGG 2 cut(s) 148, 2205
Eco91I GGTNACC 1 cut(s) 1000
EcoICRI GAGCTC 1 cut(s) 128
EcoNI CCTNNNNNAGG 1 cut(s) 3047
EcoO65I GGTNACC 1 cut(s) 1000
EcoRII CCWGG 3 cut(s) 295, 377, 1395
EcoRV GATATC 2 cut(s) 1417, 3303
EcoT14I CCWWGG 2 cut(s) 1059, 1675
EcoT22I ATGCAT 1 cut(s) 3021
EcoT38I GRGCYC 2 cut(s) 130, 1134
ErhI CCWWGG 2 cut(s) 1059, 1675
FalI AAGNNNNNCTT 6 cut(s) 714, 746, 1258, 1290, 3027, 3059
FaqI GGGAC 2 cut(s) 1206, 2341
FauNDI CATATG 2 cut(s) 864, 1704
FbaI TGATCA 2 cut(s) 859, 2445
FblI GTMKAC 2 cut(s) 1322, 2786
FriOI GRGCYC 2 cut(s) 130, 1134
FspBI CTAG 7 cut(s) 354, 360, 599, 741, 1833, 2174, 2642
GlaI GCGC 2 cut(s) 1656, 2734
GsaI CCCAGC 3 cut(s) 1461, 1671, 2076
HaeIII GGCC 7 cut(s) 571, 1509, 2184, 2346, 2529, 2765, 3129
HgaI GACGC 1 cut(s) 1688
HhaI GCGC 2 cut(s) 1657, 2735
Hin6I GCGC 2 cut(s) 1655, 2733
HinP1I GCGC 2 cut(s) 1655, 2733
HincII GTYRAC 1 cut(s) 1080
HindII GTYRAC 1 cut(s) 1080
HindIII AAGCTT 3 cut(s) 728, 1148, 1158
HinfI GANTC 9 cut(s) 203, 371, 416, 1167, 1408, 1446, 1603, 2507, 2656
HphI GGTGA 6 cut(s) 1086, 1787, 1820, 2139, 3155, 3275
Hpy166II GTNNAC 9 cut(s) 502, 897, 1080, 1323, 1951, 2166, 2434, 2787, 3216
Hpy188III TCNNGA 6 cut(s) 1412, 2012, 2191, 2653, 2960, 3306
Hpy8I GTNNAC 9 cut(s) 502, 897, 1080, 1323, 1951, 2166, 2434, 2787, 3216
Hpy99I CGWCG 1 cut(s) 577
HpyCH4III ACNGT 6 cut(s) 935, 1613, 1945, 2060, 2712, 3083
HpyCH4IV ACGT 4 cut(s) 1082, 1319, 2054, 3212
HpyF10VI GCNNNNNNNGC 8 cut(s) 608, 1243, 1563, 1787, 2732, 2903, 2977, 3044
HpySE526I ACGT 4 cut(s) 1082, 1319, 2054, 3212
HspAI GCGC 2 cut(s) 1655, 2733
Ksp22I TGATCA 2 cut(s) 859, 2445
LmnI GCTCC 3 cut(s) 1787, 2693, 2840
LweI GCATC 5 cut(s) 638, 1768, 2744, 2940, 3006
MaeI CTAG 7 cut(s) 354, 360, 599, 741, 1833, 2174, 2642
MaeII ACGT 4 cut(s) 1082, 1319, 2054, 3212
MfeI CAATTG 3 cut(s) 404, 811, 3344
MflI RGATCY 1 cut(s) 1587
MhlI GDGCHC 3 cut(s) 130, 1134, 1437
MlsI TGGCCA 1 cut(s) 2529
MluNI TGGCCA 1 cut(s) 2529
MlyI GAGTC 5 cut(s) 212, 365, 410, 1161, 2516
MmeI TCCRAC 1 cut(s) 3014
Mox20I TGGCCA 1 cut(s) 2529
Mph1103I ATGCAT 1 cut(s) 3021
MroXI GAANNNNTTC 1 cut(s) 272
MscI TGGCCA 1 cut(s) 2529
MslI CAYNNNNRTG 2 cut(s) 634, 3084
Msp20I TGGCCA 1 cut(s) 2529
MspR9I CCNGG 3 cut(s) 297, 379, 1397
MunI CAATTG 3 cut(s) 404, 811, 3344
Mva1269I GAATGC 2 cut(s) 1923, 2982
MvaI CCWGG 3 cut(s) 297, 379, 1397
MvnI CGCG 1 cut(s) 2733
MwoI GCNNNNNNNGC 8 cut(s) 608, 1243, 1563, 1787, 2732, 2903, 2977, 3044
NdeI CATATG 2 cut(s) 864, 1704
NlaIV GGNNCC 3 cut(s) 76, 1673, 2345
NmuCI GTSAC 6 cut(s) 204, 1613, 2145, 2480, 2878, 2888
NsiI ATGCAT 1 cut(s) 3021
NspI RCATGY 8 cut(s) 910, 1379, 1475, 1638, 1977, 2424, 2481, 2971
NspV TTCGAA 1 cut(s) 2974
OliI CACNNNNGTG 1 cut(s) 3084
PaeI GCATGC 2 cut(s) 2424, 2971
PagI TCATGA 1 cut(s) 2652
PceI AGGCCT 1 cut(s) 3129
PciI ACATGT 4 cut(s) 1471, 1634, 1973, 2477
PcsI WCGNNNNNNNCGW 1 cut(s) 2971
PctI GAATGC 2 cut(s) 1923, 2982
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 4 cut(s) 1408, 1446, 1603, 2656
PflMI CCANNNNNTGG 1 cut(s) 251
PfoI TCCNGGA 1 cut(s) 1395
PleI GAGTC 5 cut(s) 211, 365, 410, 1161, 2515
PpsI GAGTC 5 cut(s) 211, 365, 410, 1161, 2515
Ppu21I YACGTR 2 cut(s) 1320, 2055
PscI ACATGT 4 cut(s) 1471, 1634, 1973, 2477
PshBI ATTAAT 1 cut(s) 2808
PsiI TTATAA 2 cut(s) 798, 1113
Psp124BI GAGCTC 1 cut(s) 130
Psp1406I AACGTT 1 cut(s) 1082
Psp6I CCWGG 3 cut(s) 295, 377, 1395
PspEI GGTNACC 1 cut(s) 1000
PspFI CCCAGC 3 cut(s) 1457, 1667, 2072
PspGI CCWGG 3 cut(s) 295, 377, 1395
PspN4I GGNNCC 3 cut(s) 76, 1673, 2345
PspPI GGNCC 3 cut(s) 616, 1393, 2344
PstI CTGCAG 2 cut(s) 1454, 1687
PsuI RGATCY 1 cut(s) 1587
RseI CAYNNNNRTG 2 cut(s) 634, 3084
SacI GAGCTC 1 cut(s) 130
Sau96I GGNCC 3 cut(s) 616, 1393, 2344
ScaI AGTACT 2 cut(s) 688, 1273
SchI GAGTC 5 cut(s) 212, 365, 410, 1161, 2516
ScrFI CCNGG 3 cut(s) 297, 379, 1397
SduI GDGCHC 3 cut(s) 130, 1134, 1437
SfaNI GCATC 5 cut(s) 638, 1768, 2744, 2940, 3006
SfcI CTRYAG 4 cut(s) 189, 531, 1450, 1683
SfuI TTCGAA 1 cut(s) 2974
SinI GGWCC 2 cut(s) 616, 1393
SmiMI CAYNNNNRTG 2 cut(s) 634, 3084
SmlI CTYRAG 2 cut(s) 505, 2293
SmoI CTYRAG 2 cut(s) 505, 2293
SnaBI TACGTA 2 cut(s) 1320, 2055
SphI GCATGC 2 cut(s) 2424, 2971
SseBI AGGCCT 1 cut(s) 3129
SsiI CCGC 2 cut(s) 2673, 2731
SspMI CTAG 7 cut(s) 354, 360, 599, 741, 1833, 2174, 2642
SstI GAGCTC 1 cut(s) 130
StuI AGGCCT 1 cut(s) 3129
StyD4I CCNGG 3 cut(s) 295, 377, 1395
StyI CCWWGG 2 cut(s) 1059, 1675
TaaI ACNGT 6 cut(s) 935, 1613, 1945, 2060, 2712, 3083
TaiI ACGT 4 cut(s) 1085, 1322, 2057, 3215
TaqI TCGA 5 cut(s) 419, 1138, 1575, 2974, 3096
TaqII GACCGA 1 cut(s) 210
TatI WGTACW 9 cut(s) 686, 896, 1271, 1950, 2163, 2250, 2433, 3134, 3168
TfiI GAWTC 4 cut(s) 1408, 1446, 1603, 2656
TscAI CASTG 8 cut(s) 213, 252, 1194, 1437, 1624, 2433, 3086, 3339
TseFI GTSAC 6 cut(s) 204, 1613, 2145, 2480, 2878, 2888
Tsp45I GTSAC 6 cut(s) 204, 1613, 2145, 2480, 2878, 2888
TspRI CASTG 8 cut(s) 213, 252, 1194, 1437, 1624, 2433, 3086, 3339
Van91I CCANNNNNTGG 1 cut(s) 251
VpaK11BI GGWCC 2 cut(s) 616, 1393
VspI ATTAAT 1 cut(s) 2808
XagI CCTNNNNNAGG 1 cut(s) 3047
XapI RAATTY 8 cut(s) 33, 269, 1523, 1901, 1987, 2139, 2718, 3310
XceI RCATGY 8 cut(s) 910, 1379, 1475, 1638, 1977, 2424, 2481, 2971
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
XmiI GTMKAC 2 cut(s) 1322, 2786
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 7 cut(s) 354, 360, 599, 741, 1833, 2174, 2642
ZrmI AGTACT 2 cut(s) 688, 1273
Zsp2I ATGCAT 1 cut(s) 3021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.