Rorug02G0137600
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001796
Physical Location & Seq
Reverse (-)
12116816 .. 12117859
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0137600.1

Sequence Viewer

Length: 1044 bp
ATGTTTCCTCTCAGTCCCAAAAATATACCTACATCAGTATCCTCACTGTTCTCAGCCTATGCCTCCTTTACTGCATTCATAATGTTGTTCCGTGCCATTGTCAATGAACTCAAATATCTCATCCCCCTCGGGGTTCGATCATACATATACTCTAAATTTCGGTACTACTTCTTTACTCATCCCTCTGATGATGACCTAACTCTTGTCATCAACAAGCACTTTGGCATGGCGCCTAACGAGGTCTATGAGAAGGTAGAGGTCTACCTTGGAGCCAAGATTAGTCCTTCCGACAAGCGTCTGATACTGAGCAAGACAAATCAACAGAAGACTGTCACACTCGCCATTGAAAAAAGAGGCCAAGTTGTCAGTGATACCTTTGATGACATTGACCTTCGGTGGAGTTACGTGGCCAAACCAAAGAAGTCCAAATCCAAGCAGAGTTCTGCTGGAGATGATGAAGAAGAAGTAGAGTGGTGCTTTGAGTTAATGTTCAATGAGAAACACAAAGCCAAAGTGATAGACTCCTACATTCCCTATGTGTTTACTCAGGCCGAATCCATTAAACAAGGGGAGAAAGCTCTAAAGCTTCATTGTTCTGGTAGGGATCATTATGGGACTTCTAAAAGTTGCATAGATCTTGTACACCCTGCAACTTTTGAGACAATAGCAATGGATTCAGAACTTAAAAAAATGATCATAGATGACTTGGATATGTTCGTGAAGAGGAGGGAATTTTATAAGAAGGTTGGGAAGGCTTGGAAAAGAGGTTATTTGTTATATGGTCCACCTGGTACTGGAAAATCTAGCTTGATTGCTGCCATGGCTAATTATCTCCAGTTTGATATACATGATTTAGAGCTTTCTGGTATTCGTGACAACTCTGACTTGAGAAGGGTGTTGTTGTCTACTACAAATCGTTCTATTCTGGTTGTTGAGGACATTGACTGCAGCGTGAAAAAAAAAAATCGGGAATCAGCTCAGCCTTCCAAACCCTCTAATAGCCTAGATTGTAGTCCAACAAGCAAGGTCAGTACTGAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022622 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0047484 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048527 GO:0048528 GO:0048583 GO:0048584 GO:0048585 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0090696 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901000 GO:1901001 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

347

Amino Acids

39.48

Weight (kDa)

8.81

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 41 - 136 1.1e-17 Domain associated at C-terminal with AAA
AAA PF00004 257 - 328 2.1e-10 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 738
AccB1I GGYRCC 1 cut(s) 229
AccI GTMKAC 2 cut(s) 261, 905
AclWI GGATC 1 cut(s) 612
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 3 cut(s) 155, 731, 1038
AcyI GRCGYC 1 cut(s) 230
AfaI GTAC 4 cut(s) 164, 642, 793, 1033
AfiI CCNNNNNNNGG 2 cut(s) 130, 794
AgsI TTSAA 2 cut(s) 347, 493
AjnI CCWGG 1 cut(s) 787
AluBI AGCT 5 cut(s) 578, 586, 807, 859, 977
AluI AGCT 5 cut(s) 578, 586, 807, 859, 977
Alw26I GTCTC 1 cut(s) 653
AlwI GGATC 1 cut(s) 612
Ama87I CYCGRG 1 cut(s) 128
AoxI GGCC 3 cut(s) 355, 408, 549
ApeKI GCWGC 2 cut(s) 815, 948
ApoI RAATTY 3 cut(s) 155, 731, 1038
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 782
AvaI CYCGRG 1 cut(s) 128
AvaII GGWCC 1 cut(s) 782
BaeI ACNNNNGTAYC 2 cut(s) 21, 54
BalI TGGCCA 1 cut(s) 410
BanI GGYRCC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 332
BbvI GCAGC 2 cut(s) 802, 960
BciT130I CCWGG 1 cut(s) 789
BciVI GTATCC 1 cut(s) 49
BclI TGATCA 1 cut(s) 693
BcoDI GTCTC 1 cut(s) 653
BfaI CTAG 2 cut(s) 804, 1004
BfmI CTRYAG 1 cut(s) 946
BfoI RGCGCY 1 cut(s) 233
BfuI GTATCC 1 cut(s) 49
BglII AGATCT 1 cut(s) 634
BisI GCNGC 2 cut(s) 816, 949
BlpI GCTNAGC 1 cut(s) 978
BlsI GCNGC 2 cut(s) 817, 950
BmcAI AGTACT 1 cut(s) 1033
Bme1390I CCNGG 1 cut(s) 789
Bme18I GGWCC 1 cut(s) 782
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 782
BmiI GGNNCC 2 cut(s) 231, 271
BmrFI CCNGG 1 cut(s) 789
BoxI GACNNNNGTC 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 332
BpmI CTGGAG 2 cut(s) 468, 818
Bpu1102I GCTNAGC 1 cut(s) 978
BpuEI CTTGAG 1 cut(s) 907
BsaAI YACGTR 1 cut(s) 406
BsaHI GRCGYC 1 cut(s) 230
BsaJI CCNNGG 3 cut(s) 127, 265, 819
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 794
Bse1I ACTGG 2 cut(s) 799, 835
Bse3DI GCAATG 1 cut(s) 675
BseBI CCWGG 1 cut(s) 789
BseDI CCNNGG 3 cut(s) 127, 265, 819
BseGI GGATG 2 cut(s) 120, 178
BseLI CCNNNNNNNGG 2 cut(s) 130, 794
BseMI GCAATG 1 cut(s) 675
BseMII CTCAG 5 cut(s) 25, 66, 296, 560, 992
BseNI ACTGG 2 cut(s) 799, 835
BseRI GAGGAG 1 cut(s) 739
BseXI GCAGC 2 cut(s) 802, 960
BshFI GGCC 3 cut(s) 357, 410, 551
BshNI GGYRCC 1 cut(s) 229
BsiHKCI CYCGRG 1 cut(s) 128
BslFI GGGAC 1 cut(s) 628
BslI CCNNNNNNNGG 2 cut(s) 130, 794
BsmAI GTCTC 1 cut(s) 653
BsmFI GGGAC 1 cut(s) 628
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 3 cut(s) 357, 410, 551
BsoBI CYCGRG 1 cut(s) 128
Bsp1407I TGTACA 1 cut(s) 640
Bsp143I GATC 4 cut(s) 137, 604, 634, 693
Bsp1720I GCTNAGC 1 cut(s) 978
Bsp19I CCATGG 1 cut(s) 819
BspANI GGCC 3 cut(s) 357, 410, 551
BspCNI CTCAG 5 cut(s) 24, 65, 297, 559, 991
BspLI GGNNCC 2 cut(s) 231, 271
BspMAI CTGCAG 1 cut(s) 950
BspPI GGATC 1 cut(s) 612
BspT107I GGYRCC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 675
BsrGI TGTACA 1 cut(s) 640
BsrI ACTGG 2 cut(s) 799, 835
BssECI CCNNGG 3 cut(s) 127, 265, 819
BssMI GATC 4 cut(s) 137, 604, 634, 693
BssNI GRCGYC 1 cut(s) 230
BssT1I CCWWGG 2 cut(s) 265, 819
Bst2UI CCWGG 1 cut(s) 789
Bst4CI ACNGT 2 cut(s) 48, 331
Bst6I CTCTTC 1 cut(s) 716
BstACI GRCGYC 1 cut(s) 230
BstAUI TGTACA 1 cut(s) 640
BstBAI YACGTR 1 cut(s) 406
BstDEI CTNAG 5 cut(s) 11, 52, 305, 546, 978
BstDSI CCRYGG 1 cut(s) 819
BstF5I GGATG 2 cut(s) 120, 178
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 4 cut(s) 140, 607, 637, 696
BstMAI GTCTC 1 cut(s) 653
BstMBI GATC 4 cut(s) 137, 604, 634, 693
BstMWI GCNNNNNNNGC 1 cut(s) 821
BstNI CCWGG 1 cut(s) 789
BstPAI GACNNNNGTC 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 787
BstSFI CTRYAG 1 cut(s) 946
BstV1I GCAGC 2 cut(s) 802, 960
BstV2I GAAGAC 1 cut(s) 332
BstX2I RGATCY 1 cut(s) 634
BstYI RGATCY 1 cut(s) 634
BsuI GTATCC 1 cut(s) 49
BsuRI GGCC 3 cut(s) 357, 410, 551
BtgI CCRYGG 1 cut(s) 819
BtsCI GGATG 2 cut(s) 120, 178
BtsIMutI CAGTG 2 cut(s) 44, 373
CfoI GCGC 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 782
CseI GACGC 1 cut(s) 284
CsiI ACCWGGT 1 cut(s) 787
Csp6I GTAC 4 cut(s) 163, 641, 792, 1032
CviAII CATG 3 cut(s) 226, 820, 848
CviQI GTAC 4 cut(s) 163, 641, 792, 1032
DdeI CTNAG 5 cut(s) 11, 52, 305, 546, 978
DinI GGCGCC 1 cut(s) 231
DpnI GATC 4 cut(s) 139, 606, 636, 695
DpnII GATC 4 cut(s) 137, 604, 634, 693
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 1 cut(s) 716
EarI CTCTTC 1 cut(s) 716
Eco130I CCWWGG 2 cut(s) 265, 819
Eco47I GGWCC 1 cut(s) 782
Eco88I CYCGRG 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 787
EcoT14I CCWWGG 2 cut(s) 265, 819
EgeI GGCGCC 1 cut(s) 231
EheI GGCGCC 1 cut(s) 231
ErhI CCWWGG 2 cut(s) 265, 819
FaeI CATG 3 cut(s) 229, 823, 851
FaqI GGGAC 1 cut(s) 628
FatI CATG 3 cut(s) 225, 819, 847
FbaI TGATCA 1 cut(s) 693
FblI GTMKAC 2 cut(s) 261, 905
Fnu4HI GCNGC 2 cut(s) 816, 949
FokI GGATG 2 cut(s) 107, 165
Fsp4HI GCNGC 2 cut(s) 816, 949
FspBI CTAG 2 cut(s) 804, 1004
GlaI GCGC 1 cut(s) 231
GluI GCNGC 2 cut(s) 816, 949
GsuI CTGGAG 2 cut(s) 468, 818
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 3 cut(s) 357, 410, 551
HgaI GACGC 1 cut(s) 284
HhaI GCGC 1 cut(s) 232
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 3 cut(s) 229, 823, 851
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 4 cut(s) 521, 554, 674, 971
Hpy166II GTNNAC 5 cut(s) 262, 543, 643, 785, 906
Hpy188I TCNGA 5 cut(s) 187, 289, 300, 679, 883
Hpy188III TCNNGA 3 cut(s) 718, 872, 968
Hpy8I GTNNAC 5 cut(s) 262, 543, 643, 785, 906
HpyAV CCTTC 7 cut(s) 244, 294, 401, 736, 745, 885, 993
HpyCH4III ACNGT 2 cut(s) 48, 331
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 4 cut(s) 74, 630, 650, 948
HpyF10VI GCNNNNNNNGC 1 cut(s) 821
HpyF3I CTNAG 5 cut(s) 11, 52, 305, 546, 978
HpySE526I ACGT 1 cut(s) 405
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 3 cut(s) 229, 823, 851
HspAI GCGC 1 cut(s) 230
KasI GGCGCC 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 693
Kzo9I GATC 4 cut(s) 137, 604, 634, 693
LmnI GCTCC 1 cut(s) 269
Lsp1109I GCAGC 2 cut(s) 802, 960
MabI ACCWGGT 1 cut(s) 787
MaeI CTAG 2 cut(s) 804, 1004
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 3 cut(s) 331, 401, 872
MalI GATC 4 cut(s) 139, 606, 636, 695
MboI GATC 4 cut(s) 137, 604, 634, 693
MboII GAAGA 4 cut(s) 337, 470, 473, 733
MflI RGATCY 1 cut(s) 634
MlsI TGGCCA 1 cut(s) 410
MluCI AATT 4 cut(s) 155, 731, 826, 1038
MluNI TGGCCA 1 cut(s) 410
Mly113I GGCGCC 1 cut(s) 230
MlyI GAGTC 1 cut(s) 515
MmeI TCCRAC 2 cut(s) 312, 1040
Mox20I TGGCCA 1 cut(s) 410
MscI TGGCCA 1 cut(s) 410
MseI TTAA 4 cut(s) 485, 561, 684, 1042
Msp20I TGGCCA 1 cut(s) 410
MspR9I CCNGG 1 cut(s) 789
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 1 cut(s) 789
MwoI GCNNNNNNNGC 1 cut(s) 821
NarI GGCGCC 1 cut(s) 230
NcoI CCATGG 1 cut(s) 819
NdeII GATC 4 cut(s) 137, 604, 634, 693
NlaIII CATG 3 cut(s) 229, 823, 851
NlaIV GGNNCC 2 cut(s) 231, 271
NmuCI GTSAC 2 cut(s) 331, 872
PctI GAATGC 1 cut(s) 74
PfeI GAWTC 3 cut(s) 554, 674, 971
PkrI GCNGC 2 cut(s) 817, 950
PleI GAGTC 1 cut(s) 515
PluTI GGCGCC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 515
Ppu21I YACGTR 1 cut(s) 406
PshAI GACNNNNGTC 1 cut(s) 294
PsiI TTATAA 1 cut(s) 738
Psp6I CCWGG 1 cut(s) 787
PspGI CCWGG 1 cut(s) 787
PspN4I GGNNCC 2 cut(s) 231, 271
PspPI GGNCC 1 cut(s) 782
PstI CTGCAG 1 cut(s) 950
PsuI RGATCY 1 cut(s) 634
RsaI GTAC 4 cut(s) 164, 642, 793, 1033
RsaNI GTAC 4 cut(s) 163, 641, 792, 1032
SaqAI TTAA 4 cut(s) 485, 561, 684, 1042
SatI GCNGC 2 cut(s) 816, 949
Sau3AI GATC 4 cut(s) 137, 604, 634, 693
Sau96I GGNCC 1 cut(s) 782
ScaI AGTACT 1 cut(s) 1033
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 1 cut(s) 789
SexAI ACCWGGT 1 cut(s) 787
SfcI CTRYAG 1 cut(s) 946
SfoI GGCGCC 1 cut(s) 231
SinI GGWCC 1 cut(s) 782
SmlI CTYRAG 1 cut(s) 886
SmoI CTYRAG 1 cut(s) 886
Sse9I AATT 4 cut(s) 155, 731, 826, 1038
SspDI GGCGCC 1 cut(s) 229
SspMI CTAG 2 cut(s) 804, 1004
StyD4I CCNGG 1 cut(s) 787
StyI CCWWGG 2 cut(s) 265, 819
TaaI ACNGT 2 cut(s) 48, 331
TaiI ACGT 1 cut(s) 408
TaqI TCGA 1 cut(s) 136
TasI AATT 4 cut(s) 155, 731, 826, 1038
TatI WGTACW 2 cut(s) 640, 1031
TfiI GAWTC 3 cut(s) 554, 674, 971
Tru1I TTAA 4 cut(s) 485, 561, 684, 1042
Tru9I TTAA 4 cut(s) 485, 561, 684, 1042
TscAI CASTG 2 cut(s) 51, 373
TseFI GTSAC 2 cut(s) 331, 872
TseI GCWGC 2 cut(s) 815, 948
Tsp45I GTSAC 2 cut(s) 331, 872
TspDTI ATGAA 4 cut(s) 67, 120, 471, 578
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 2 cut(s) 51, 373
VpaK11BI GGWCC 1 cut(s) 782
XapI RAATTY 3 cut(s) 155, 731, 1038
XmiI GTMKAC 2 cut(s) 261, 905
XspI CTAG 2 cut(s) 804, 1004
ZrmI AGTACT 1 cut(s) 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.