FvH4_2g33810
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
25245687 .. 25253002
7316 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33810.t2

Sequence Viewer

Length: 981 bp
ATGGCTTCTTCTTCAACCAAGAAAGCCGCGGCGGATCGGATAAAGGGTCCGTGGAGCCCGGAGGAAGACGAAGCGTTACAGAGGCTGGTGCAGAGCTACGGCCCGAGGAACTGGTCTCTGATCAGCAAATCGATCCCTGGTCGATCCGGGAAATCGTGCCGGCTACGGTGGTGCAACCAGCTCTCGCCGGAGGTGGAGCACCGGCCGTTCACTCCTGAAGAGGACGACACCATAATCCGGGCCCACGCCCGGTTCGGGAACAAGTGGGCCACCATCTCGCGGTTGCTTAATGGCCGCACCGATAACGCCATTAAGAACCACTGGAACTCGACGCTCAAGCGCAAATTCTCGTCCATGTCCGACGACATGTCGCCGGAGCATCAGCCTCTCAAAAGATCGGCCAGCGTCGGAGCCGGTACCACCGTCTCGGGTCTGTACTTGAACCCGGGCAGCCCATCCGGATCCGACTTGAGCGATTCTAGTCTGCCCGGCGTAATTCCTCATTCGCAAGCAGCCTTCCGGCCGGTGGCGATGACTGTTGCTCCGCCGGTTGAGCCGGTGGCTTTGGCGGTGGCGGTGGATCCACCGACATCACTCAGCCTGTCGCTTCCCGGATCCAACGAAGGGCGGACTCATCAGAGATCAGCATCAGGATCCGGATCCAGCTGGATTGTGAGCCCCAAGCCTAAAGTAGTTCATCAGCCTCAAGTAATTCAAGTTCAACCTCAAGAAGCAGAAGCGGCTGCGGCTGCGGCTGCGGCTGCGGCTGCGGCGGCGCGTGTGGGGAAGCAAAACAGTAGTGAGGTGGGGATTGATAAGCAGTTCTTCACCGCGGAGTTTTTGGATGTGATGCAGGAGATGATCAGAACGGAAGTGAGGAATTATATGTCTGGGATTGAGCACAAGGGAATGATGATGCATACTGAAGCAGCCATTAAAAACGCAGTTGTAAAACGGATTGGGATTAGCAAGGTGGAGTAG

Protein Analysis

327

Amino Acids

35.11

Weight (kDa)

9.43

Isoelectric Point (pI)

54.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 61 1.1e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 75 2.9e-17 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 111 4.2e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 117 1.8e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 416
AccB1I GGYRCC 1 cut(s) 416
AccII CGCG 4 cut(s) 29, 280, 778, 833
AccIII TCCGGA 2 cut(s) 458, 656
AcoI YGGCCR 4 cut(s) 203, 292, 399, 521
AcsI RAATTY 1 cut(s) 344
AcuI CTGAAG 2 cut(s) 237, 945
AfaI GTAC 2 cut(s) 418, 437
AfiI CCNNNNNNNGG 6 cut(s) 237, 249, 255, 279, 526, 624
AflIII ACRYGT 1 cut(s) 366
AgsI TTSAA 4 cut(s) 15, 442, 716, 722
AhdI GACNNNNNGTC 1 cut(s) 367
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 3 cut(s) 96, 181, 666
AluI AGCT 3 cut(s) 96, 181, 666
Alw21I GWGCWC 2 cut(s) 201, 903
Alw26I GTCTC 2 cut(s) 120, 430
AlwNI CAGNNNCTG 1 cut(s) 85
Ama87I CYCGRG 3 cut(s) 103, 427, 445
Aor13HI TCCGGA 2 cut(s) 458, 656
AoxI GGCC 7 cut(s) 100, 203, 240, 267, 292, 399, 521
ApaI GGGCCC 1 cut(s) 244
ApeKI GCWGC 8 cut(s) 450, 512, 743, 749, 755, 761, 767, 929
ApoI RAATTY 1 cut(s) 344
Asp718I GGTACC 1 cut(s) 416
AspLEI GCGC 2 cut(s) 342, 778
AspS9I GGNCC 5 cut(s) 47, 101, 240, 241, 267
AsuC2I CCSGG 8 cut(s) 59, 148, 239, 250, 446, 447, 489, 612
AsuHPI GGTGA 1 cut(s) 820
AvaI CYCGRG 3 cut(s) 103, 427, 445
AvaII GGWCC 1 cut(s) 47
BaeGI GKGCMC 1 cut(s) 244
BaeI ACNNNNGTAYC 2 cut(s) 408, 441
BamHI GGATCC 5 cut(s) 461, 580, 614, 653, 659
BanI GGYRCC 1 cut(s) 416
BanII GRGCYC 3 cut(s) 59, 244, 680
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 2 cut(s) 201, 903
BbvI GCAGC 8 cut(s) 462, 524, 730, 736, 742, 748, 754, 941
BccI CCATC 2 cut(s) 281, 463
BceAI ACGGC 2 cut(s) 115, 190
BciT130I CCWGG 1 cut(s) 138
BclI TGATCA 2 cut(s) 120, 861
BcnI CCSGG 8 cut(s) 59, 148, 239, 250, 446, 447, 489, 612
BcoDI GTCTC 2 cut(s) 120, 430
BfaI CTAG 1 cut(s) 480
Bme1390I CCNGG 9 cut(s) 59, 138, 148, 239, 250, 446, 447, 489, 612
Bme18I GGWCC 1 cut(s) 47
BmeRI GACNNNNNGTC 1 cut(s) 367
BmeT110I CYCGRG 3 cut(s) 103, 427, 445
BmgT120I GGNCC 5 cut(s) 47, 101, 240, 241, 267
BmrFI CCNGG 9 cut(s) 59, 138, 148, 239, 250, 446, 447, 489, 612
BmsI GCATC 4 cut(s) 388, 656, 840, 906
BpiI GAAGAC 1 cut(s) 72
BpuEI CTTGAG 4 cut(s) 320, 490, 690, 711
BpuMI CCSGG 8 cut(s) 59, 148, 239, 250, 446, 447, 489, 612
Bsa29I ATCGAT 1 cut(s) 131
BsaBI GATNNNNATC 2 cut(s) 646, 658
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 6 cut(s) 27, 50, 104, 136, 445, 831
BsaWI WCCGGW 2 cut(s) 458, 656
BsaXI ACNNNNNCTCC 2 cut(s) 526, 556
Bsc4I CCNNNNNNNGG 6 cut(s) 237, 249, 255, 279, 526, 624
Bse118I RCCGGY 6 cut(s) 159, 201, 413, 523, 547, 556
Bse1I ACTGG 2 cut(s) 116, 326
Bse8I GATNNNNATC 2 cut(s) 646, 658
BseAI TCCGGA 2 cut(s) 458, 656
BseBI CCWGG 1 cut(s) 138
BseCI ATCGAT 1 cut(s) 131
BseDI CCNNGG 6 cut(s) 27, 50, 104, 136, 445, 831
BseGI GGATG 2 cut(s) 455, 850
BseJI GATNNNNATC 2 cut(s) 646, 658
BseLI CCNNNNNNNGG 6 cut(s) 237, 249, 255, 279, 526, 624
BseMII CTCAG 1 cut(s) 610
BseNI ACTGG 2 cut(s) 116, 326
BseSI GKGCMC 1 cut(s) 244
BseX3I CGGCCG 2 cut(s) 203, 521
BseXI GCAGC 8 cut(s) 462, 524, 730, 736, 742, 748, 754, 941
BsgI GTGCAG 1 cut(s) 110
Bsh1236I CGCG 4 cut(s) 29, 280, 778, 833
Bsh1285I CGRYCG 2 cut(s) 206, 524
BshFI GGCC 7 cut(s) 102, 205, 242, 269, 294, 401, 523
BshNI GGYRCC 1 cut(s) 416
BshVI ATCGAT 1 cut(s) 131
BsiEI CGRYCG 2 cut(s) 206, 524
BsiHKAI GWGCWC 2 cut(s) 201, 903
BsiHKCI CYCGRG 3 cut(s) 103, 427, 445
BslI CCNNNNNNNGG 6 cut(s) 237, 249, 255, 279, 526, 624
BsmAI GTCTC 2 cut(s) 120, 430
BsmBI CGTCTC 1 cut(s) 430
BsnI GGCC 7 cut(s) 102, 205, 242, 269, 294, 401, 523
Bso31I GGTCTC 1 cut(s) 120
BsoBI CYCGRG 3 cut(s) 103, 427, 445
Bsp120I GGGCCC 1 cut(s) 240
Bsp1286I GDGCHC 5 cut(s) 59, 201, 244, 680, 903
Bsp13I TCCGGA 2 cut(s) 458, 656
BspANI GGCC 7 cut(s) 102, 205, 242, 269, 294, 401, 523
BspCNI CTCAG 1 cut(s) 609
BspDI ATCGAT 1 cut(s) 131
BspEI TCCGGA 2 cut(s) 458, 656
BspFNI CGCG 4 cut(s) 29, 280, 778, 833
BspT107I GGYRCC 1 cut(s) 416
BspTNI GGTCTC 1 cut(s) 120
BsrFI RCCGGY 6 cut(s) 159, 201, 413, 523, 547, 556
BsrI ACTGG 2 cut(s) 116, 326
BssAI RCCGGY 6 cut(s) 159, 201, 413, 523, 547, 556
BssECI CCNNGG 6 cut(s) 27, 50, 104, 136, 445, 831
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 4 cut(s) 168, 424, 538, 797
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 3 cut(s) 161, 403, 510
BstDEI CTNAG 1 cut(s) 596
BstDSI CCRYGG 3 cut(s) 27, 50, 831
BstF5I GGATG 2 cut(s) 455, 850
BstFNI CGCG 4 cut(s) 29, 280, 778, 833
BstHHI GCGC 2 cut(s) 342, 778
BstMAI GTCTC 2 cut(s) 120, 430
BstMCI CGRYCG 2 cut(s) 206, 524
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 370
BstSCI CCNGG 9 cut(s) 57, 136, 146, 237, 248, 444, 445, 487, 610
BstSLI GKGCMC 1 cut(s) 244
BstUI CGCG 4 cut(s) 29, 280, 778, 833
BstV1I GCAGC 8 cut(s) 462, 524, 730, 736, 742, 748, 754, 941
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 5 cut(s) 461, 580, 614, 653, 659
BstYI RGATCY 5 cut(s) 461, 580, 614, 653, 659
BstZI CGGCCG 2 cut(s) 203, 521
Bsu15I ATCGAT 1 cut(s) 131
BsuRI GGCC 7 cut(s) 102, 205, 242, 269, 294, 401, 523
BsuTUI ATCGAT 1 cut(s) 131
BtgI CCRYGG 3 cut(s) 27, 50, 831
BtgZI GCGATG 1 cut(s) 545
BtsCI GGATG 2 cut(s) 455, 850
BtsIMutI CAGTG 1 cut(s) 319
Cac8I GCNNGC 3 cut(s) 161, 403, 510
CaiI CAGNNNCTG 1 cut(s) 85
CfoI GCGC 2 cut(s) 342, 778
Cfr10I RCCGGY 6 cut(s) 159, 201, 413, 523, 547, 556
Cfr13I GGNCC 5 cut(s) 47, 101, 240, 241, 267
Cfr42I CCGCGG 2 cut(s) 30, 834
Cfr9I CCCGGG 1 cut(s) 445
ClaI ATCGAT 1 cut(s) 131
CseI GACGC 2 cut(s) 340, 394
Csp6I GTAC 2 cut(s) 417, 436
CviAII CATG 2 cut(s) 355, 367
CviQI GTAC 2 cut(s) 417, 436
DdeI CTNAG 1 cut(s) 596
DriI GACNNNNNGTC 1 cut(s) 367
EaeI YGGCCR 4 cut(s) 203, 292, 399, 521
EagI CGGCCG 2 cut(s) 203, 521
Eam1104I CTCTTC 1 cut(s) 213
Eam1105I GACNNNNNGTC 1 cut(s) 367
EarI CTCTTC 1 cut(s) 213
EciI GGCGGA 3 cut(s) 47, 534, 643
EclXI CGGCCG 2 cut(s) 203, 521
Eco24I GRGCYC 3 cut(s) 59, 244, 680
Eco31I GGTCTC 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 47
Eco52I CGGCCG 2 cut(s) 203, 521
Eco57I CTGAAG 2 cut(s) 237, 945
Eco88I CYCGRG 3 cut(s) 103, 427, 445
EcoRII CCWGG 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 921
EcoT38I GRGCYC 3 cut(s) 59, 244, 680
Esp3I CGTCTC 1 cut(s) 430
FaeI CATG 2 cut(s) 358, 370
FaiI YATR 6 cut(s) 233, 356, 368, 885, 887, 921
FalI AAGNNNNNCTT 2 cut(s) 809, 841
FatI CATG 2 cut(s) 354, 366
FbaI TGATCA 2 cut(s) 120, 861
FokI GGATG 2 cut(s) 442, 857
FriOI GRGCYC 3 cut(s) 59, 244, 680
FspBI CTAG 1 cut(s) 480
GlaI GCGC 2 cut(s) 341, 777
HaeIII GGCC 7 cut(s) 102, 205, 242, 269, 294, 401, 523
HgaI GACGC 2 cut(s) 340, 394
HhaI GCGC 2 cut(s) 342, 778
Hin1II CATG 2 cut(s) 358, 370
Hin6I GCGC 2 cut(s) 340, 776
HinP1I GCGC 2 cut(s) 340, 776
HinfI GANTC 2 cut(s) 476, 631
HphI GGTGA 1 cut(s) 820
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 7 cut(s) 39, 120, 361, 410, 466, 639, 866
Hpy188III TCNNGA 6 cut(s) 215, 256, 459, 651, 657, 728
Hpy8I GTNNAC 1 cut(s) 210
Hpy99I CGWCG 3 cut(s) 334, 365, 410
HpyAV CCTTC 2 cut(s) 526, 617
HpyCH4III ACNGT 4 cut(s) 168, 424, 538, 797
HpyCH4V TGCA 4 cut(s) 91, 174, 853, 919
HpyF3I CTNAG 1 cut(s) 596
Hsp92II CATG 2 cut(s) 358, 370
HspAI GCGC 2 cut(s) 340, 776
Kpn2I TCCGGA 2 cut(s) 458, 656
KpnI GGTACC 1 cut(s) 420
KroI GCCGGC 1 cut(s) 159
KroNI GCCGGC 1 cut(s) 161
Ksp22I TGATCA 2 cut(s) 120, 861
KspI CCGCGG 2 cut(s) 30, 834
LmnI GCTCC 5 cut(s) 54, 196, 376, 410, 547
Lsp1109I GCAGC 8 cut(s) 462, 524, 730, 736, 742, 748, 754, 941
LweI GCATC 4 cut(s) 388, 656, 840, 906
MaeI CTAG 1 cut(s) 480
MaeIII GTNAC 1 cut(s) 75
MboII GAAGA 4 cut(s) 3, 77, 230, 817
MflI RGATCY 5 cut(s) 461, 580, 614, 653, 659
MhlI GDGCHC 5 cut(s) 59, 201, 244, 680, 903
MluCI AATT 4 cut(s) 344, 495, 711, 880
MlyI GAGTC 1 cut(s) 625
MmeI TCCRAC 4 cut(s) 384, 388, 489, 642
Mph1103I ATGCAT 1 cut(s) 921
MroI TCCGGA 2 cut(s) 458, 656
MroNI GCCGGC 1 cut(s) 159
MseI TTAA 3 cut(s) 288, 312, 936
MspA1I CMGCKG 3 cut(s) 29, 666, 833
MspR9I CCNGG 9 cut(s) 59, 138, 148, 239, 250, 446, 447, 489, 612
MvaI CCWGG 1 cut(s) 138
MvnI CGCG 4 cut(s) 29, 280, 778, 833
NaeI GCCGGC 1 cut(s) 161
NciI CCSGG 8 cut(s) 59, 148, 239, 250, 446, 447, 489, 612
NgoMIV GCCGGC 1 cut(s) 159
NlaIII CATG 2 cut(s) 358, 370
NsiI ATGCAT 1 cut(s) 921
NspI RCATGY 1 cut(s) 370
PciI ACATGT 1 cut(s) 366
PdiI GCCGGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 476
PfoI TCCNGGA 2 cut(s) 146, 610
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
PscI ACATGT 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspOMI GGGCCC 1 cut(s) 240
PspPI GGNCC 5 cut(s) 47, 101, 240, 241, 267
PsrI GAACNNNNNNTAC 2 cut(s) 702, 734
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 5 cut(s) 461, 580, 614, 653, 659
PvuII CAGCTG 1 cut(s) 666
RsaI GTAC 2 cut(s) 418, 437
RsaNI GTAC 2 cut(s) 417, 436
SacII CCGCGG 2 cut(s) 30, 834
SaqAI TTAA 3 cut(s) 288, 312, 936
Sau96I GGNCC 5 cut(s) 47, 101, 240, 241, 267
SchI GAGTC 1 cut(s) 625
ScrFI CCNGG 9 cut(s) 59, 138, 148, 239, 250, 446, 447, 489, 612
SduI GDGCHC 5 cut(s) 59, 201, 244, 680, 903
SetI ASST 7 cut(s) 98, 183, 195, 668, 727, 807, 975
SfaNI GCATC 4 cut(s) 388, 656, 840, 906
Sfr303I CCGCGG 2 cut(s) 30, 834
SgrBI CCGCGG 2 cut(s) 30, 834
SinI GGWCC 1 cut(s) 47
SmaI CCCGGG 1 cut(s) 447
SmlI CTYRAG 4 cut(s) 335, 469, 705, 726
SmoI CTYRAG 4 cut(s) 335, 469, 705, 726
Sse9I AATT 4 cut(s) 344, 495, 711, 880
SspMI CTAG 1 cut(s) 480
StyD4I CCNGG 9 cut(s) 57, 136, 146, 237, 248, 444, 445, 487, 610
TaaI ACNGT 4 cut(s) 168, 424, 538, 797
TaqI TCGA 3 cut(s) 131, 142, 329
TasI AATT 4 cut(s) 344, 495, 711, 880
TatI WGTACW 1 cut(s) 435
TfiI GAWTC 1 cut(s) 476
Tru1I TTAA 3 cut(s) 288, 312, 936
Tru9I TTAA 3 cut(s) 288, 312, 936
TscAI CASTG 1 cut(s) 326
TseI GCWGC 8 cut(s) 450, 512, 743, 749, 755, 761, 767, 929
TspDTI ATGAA 1 cut(s) 686
TspGWI ACGGA 3 cut(s) 39, 884, 970
TspMI CCCGGG 1 cut(s) 445
TspRI CASTG 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 47
XapI RAATTY 1 cut(s) 344
XceI RCATGY 1 cut(s) 370
XmaI CCCGGG 1 cut(s) 445
XspI CTAG 1 cut(s) 480
Zsp2I ATGCAT 1 cut(s) 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.