RchiOBHm_Chr6g0255341
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001796
Physical Location & Seq
Reverse (-)
10679061 .. 10680614
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22901

Sequence Viewer

Length: 798 bp
ATGGATAGCGAATCGGTTCAGCGGCAACAGAGGGAGTTGGATCGGGTTAAGGGGCCGTGGAGCCCCGAAGAGGACGACTTGCTGAGGAAGCTGGTGCAGCGGCACGGCGCTCGGAACTGGACGCTGATAAGCAAGTCGATCCCCGGCCGGTCCGGCAAGTCGTGCCGGCTCCGGTGGTGCAATCAGCTCTCGCCGGAGGTGGAGCACCGGTGGGCCACCATAGCCAGGCTCCTCAACGGCCGTACGGACAATGCGATCAAGAACCACTGGAACTCCACTCTGAAGCGGAAGTACTCGTCCATGGCGGAAGACGGCGTCGTCGTCGGCGGCGGAGGCGGTTCGATCGAGGAGCATCATCACCTCAGGCCGGAGAAGAAATCCGCGACGGTTTCGGTGTCGGGCCGCGGATACAGTCCGACGAGCCTGTCCGGATCCGACGTCAGCGACTCCGGCGTGGTGCCTGCAGTGTCGTCGGCCCAGGTGTTCAGGCCAGTGGCGAGAGCTGTGTTGAGGACGGAGTCGCCGCCGAGCCAGAACGAAATGATCCACAATGAACCGGAGCCGTCGACTCTGCTGACTCTGTCGTTACCTGGAAGGTACTCGACCGAGTTGGCGACTCGCCGAGAAGAAAGAACGACGTCGTTGCAGCAGCAGCAGCAGGAGGCTGAGAATGAGAACAGAACGATGTCGTTTGGGCCGGAGTTCATGTCTTTTATGCAGGAGATGATTAGGAAGGAGGTTAGGAACTACATGGATGACATGAACGGTCTGCACTTTGGTATACCCAAGCTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

265

Amino Acids

29.85

Weight (kDa)

8.9

Isoelectric Point (pI)

63.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 17 - 63 1.4e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 20 - 68 4.3e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 93 2.4e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 317, 424
AatII GACGTC 2 cut(s) 441, 641
AccB1I GGYRCC 1 cut(s) 457
AccI GTMKAC 2 cut(s) 566, 781
AccII CGCG 2 cut(s) 383, 405
AccIII TCCGGA 1 cut(s) 428
AclWI GGATC 5 cut(s) 48, 133, 426, 439, 538
AcoI YGGCCR 2 cut(s) 145, 238
AcuI CTGAAG 1 cut(s) 302
AcyI GRCGYC 3 cut(s) 315, 438, 638
AfaI GTAC 3 cut(s) 244, 293, 599
AfiI CCNNNNNNNGG 3 cut(s) 70, 225, 367
AgeI ACCGGT 1 cut(s) 207
AjnI CCWGG 3 cut(s) 224, 477, 589
AluBI AGCT 4 cut(s) 91, 187, 503, 790
AluI AGCT 4 cut(s) 91, 187, 503, 790
Alw21I GWGCWC 1 cut(s) 207
AlwI GGATC 5 cut(s) 48, 133, 426, 439, 538
Aor13HI TCCGGA 1 cut(s) 428
AoxI GGCC 9 cut(s) 53, 145, 213, 238, 365, 400, 474, 488, 695
ApeKI GCWGC 5 cut(s) 97, 646, 649, 652, 655
AsiGI ACCGGT 1 cut(s) 207
Asp700I GAANNNNTTC 1 cut(s) 15
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 6 cut(s) 53, 150, 213, 400, 475, 695
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 350
AvaII GGWCC 1 cut(s) 150
AxyI CCTNAGG 1 cut(s) 362
BamHI GGATCC 1 cut(s) 431
BanI GGYRCC 1 cut(s) 457
BanII GRGCYC 1 cut(s) 65
BarI GAAGNNNNNNTAC 2 cut(s) 275, 307
BbsI GAAGAC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 207
BbvCI CCTCAGC 1 cut(s) 83
BbvI GCAGC 5 cut(s) 109, 658, 661, 664, 667
BceAI ACGGC 6 cut(s) 40, 121, 225, 253, 328, 547
BcgI CGANNNNNNTGC 6 cut(s) 92, 126, 453, 487, 625, 659
BciT130I CCWGG 3 cut(s) 226, 479, 591
BciVI GTATCC 1 cut(s) 401
BcnI CCSGG 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 462
BfoI RGCGCY 1 cut(s) 111
BfuI GTATCC 1 cut(s) 401
BglI GCCNNNNNGGC 1 cut(s) 153
BmcAI AGTACT 1 cut(s) 293
Bme1390I CCNGG 4 cut(s) 144, 226, 479, 591
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 6 cut(s) 53, 150, 213, 400, 475, 695
BmiI GGNNCC 7 cut(s) 54, 62, 170, 230, 433, 459, 561
BmrFI CCNGG 4 cut(s) 144, 226, 479, 591
BmsI GCATC 1 cut(s) 361
BpiI GAAGAC 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 144
BsaHI GRCGYC 3 cut(s) 315, 438, 638
BsaJI CCNNGG 5 cut(s) 56, 142, 300, 403, 477
BsaWI WCCGGW 4 cut(s) 171, 207, 428, 556
BsaXI ACNNNNNCTCC 6 cut(s) 194, 224, 257, 287, 692, 722
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 225, 367
Bse118I RCCGGY 3 cut(s) 147, 165, 207
Bse1I ACTGG 3 cut(s) 122, 272, 491
Bse21I CCTNAGG 1 cut(s) 362
BseAI TCCGGA 1 cut(s) 428
BseBI CCWGG 3 cut(s) 226, 479, 591
BseDI CCNNGG 5 cut(s) 56, 142, 300, 403, 477
BseGI GGATG 1 cut(s) 760
BseLI CCNNNNNNNGG 3 cut(s) 70, 225, 367
BseMII CTCAG 3 cut(s) 74, 376, 657
BseNI ACTGG 3 cut(s) 122, 272, 491
BseRI GAGGAG 2 cut(s) 221, 362
BseX3I CGGCCG 2 cut(s) 145, 238
BseXI GCAGC 5 cut(s) 109, 658, 661, 664, 667
BsgI GTGCAG 2 cut(s) 116, 755
Bsh1236I CGCG 2 cut(s) 383, 405
Bsh1285I CGRYCG 4 cut(s) 148, 241, 345, 606
BshFI GGCC 9 cut(s) 55, 147, 215, 240, 367, 402, 476, 490, 697
BshNI GGYRCC 1 cut(s) 457
BshTI ACCGGT 1 cut(s) 207
BsiEI CGRYCG 4 cut(s) 148, 241, 345, 606
BsiHKAI GWGCWC 1 cut(s) 207
BsiWI CGTACG 1 cut(s) 242
BslI CCNNNNNNNGG 3 cut(s) 70, 225, 367
BsnI GGCC 9 cut(s) 55, 147, 215, 240, 367, 402, 476, 490, 697
Bsp1286I GDGCHC 2 cut(s) 65, 207
Bsp13I TCCGGA 1 cut(s) 428
Bsp143I GATC 6 cut(s) 40, 138, 255, 342, 431, 543
Bsp19I CCATGG 1 cut(s) 300
BspANI GGCC 9 cut(s) 55, 147, 215, 240, 367, 402, 476, 490, 697
BspCNI CTCAG 3 cut(s) 75, 375, 658
BspEI TCCGGA 1 cut(s) 428
BspFNI CGCG 2 cut(s) 383, 405
BspLI GGNNCC 7 cut(s) 54, 62, 170, 230, 433, 459, 561
BspMAI CTGCAG 1 cut(s) 466
BspPI GGATC 5 cut(s) 48, 133, 426, 439, 538
BspT107I GGYRCC 1 cut(s) 457
BsrFI RCCGGY 3 cut(s) 147, 165, 207
BsrI ACTGG 3 cut(s) 122, 272, 491
BssAI RCCGGY 3 cut(s) 147, 165, 207
BssECI CCNNGG 5 cut(s) 56, 142, 300, 403, 477
BssMI GATC 6 cut(s) 40, 138, 255, 342, 431, 543
BssNAI GTATAC 1 cut(s) 782
BssNI GRCGYC 3 cut(s) 315, 438, 638
BssT1I CCWWGG 1 cut(s) 300
Bst1107I GTATAC 1 cut(s) 782
Bst2UI CCWGG 3 cut(s) 226, 479, 591
Bst4CI ACNGT 3 cut(s) 388, 413, 767
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 3 cut(s) 315, 438, 638
BstAPI GCANNNNNTGC 1 cut(s) 162
BstC8I GCNNGC 2 cut(s) 167, 462
BstDEI CTNAG 3 cut(s) 83, 362, 666
BstDSI CCRYGG 3 cut(s) 56, 300, 403
BstF5I GGATG 1 cut(s) 760
BstFNI CGCG 2 cut(s) 383, 405
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 6 cut(s) 43, 141, 258, 345, 434, 546
BstMBI GATC 6 cut(s) 40, 138, 255, 342, 431, 543
BstMCI CGRYCG 4 cut(s) 148, 241, 345, 606
BstMWI GCNNNNNNNGC 9 cut(s) 88, 97, 153, 162, 221, 333, 450, 652, 655
BstNI CCWGG 3 cut(s) 226, 479, 591
BstSCI CCNGG 4 cut(s) 142, 224, 477, 589
BstSFI CTRYAG 1 cut(s) 462
BstUI CGCG 2 cut(s) 383, 405
BstV1I GCAGC 5 cut(s) 109, 658, 661, 664, 667
BstV2I GAAGAC 1 cut(s) 315
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
BstZ17I GTATAC 1 cut(s) 782
BstZI CGGCCG 2 cut(s) 145, 238
Bsu36I CCTNAGG 1 cut(s) 362
BsuI GTATCC 1 cut(s) 401
BsuRI GGCC 9 cut(s) 55, 147, 215, 240, 367, 402, 476, 490, 697
BtgI CCRYGG 3 cut(s) 56, 300, 403
BtsCI GGATG 1 cut(s) 760
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 3 cut(s) 265, 471, 498
Cac8I GCNNGC 2 cut(s) 167, 462
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 3 cut(s) 147, 165, 207
Cfr13I GGNCC 6 cut(s) 53, 150, 213, 400, 475, 695
Cfr42I CCGCGG 1 cut(s) 406
CpoI CGGWCCG 1 cut(s) 150
CseI GACGC 2 cut(s) 130, 304
Csp6I GTAC 3 cut(s) 243, 292, 598
CspAI ACCGGT 1 cut(s) 207
CspI CGGWCCG 1 cut(s) 150
CviAII CATG 4 cut(s) 301, 706, 751, 760
CviQI GTAC 3 cut(s) 243, 292, 598
DdeI CTNAG 3 cut(s) 83, 362, 666
DpnI GATC 6 cut(s) 42, 140, 257, 344, 433, 545
DpnII GATC 6 cut(s) 40, 138, 255, 342, 431, 543
DrdI GACNNNNNNGTC 2 cut(s) 317, 424
DseDI GACNNNNNNGTC 2 cut(s) 317, 424
EaeI YGGCCR 2 cut(s) 145, 238
EagI CGGCCG 2 cut(s) 145, 238
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
EciI GGCGGA 2 cut(s) 320, 345
EclXI CGGCCG 2 cut(s) 145, 238
Eco130I CCWWGG 1 cut(s) 300
Eco24I GRGCYC 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 150
Eco52I CGGCCG 2 cut(s) 145, 238
Eco57I CTGAAG 1 cut(s) 302
Eco81I CCTNAGG 1 cut(s) 362
EcoRII CCWGG 3 cut(s) 224, 477, 589
EcoT14I CCWWGG 1 cut(s) 300
EcoT38I GRGCYC 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 4 cut(s) 304, 709, 754, 763
FaiI YATR 8 cut(s) 221, 302, 707, 716, 752, 761, 782, 796
FatI CATG 4 cut(s) 300, 705, 750, 759
FblI GTMKAC 2 cut(s) 566, 781
FokI GGATG 1 cut(s) 767
FriOI GRGCYC 1 cut(s) 65
GlaI GCGC 1 cut(s) 109
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 9 cut(s) 55, 147, 215, 240, 367, 402, 476, 490, 697
HgaI GACGC 2 cut(s) 130, 304
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 3 cut(s) 315, 438, 638
Hin1II CATG 4 cut(s) 304, 709, 754, 763
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 1 cut(s) 567
HindII GTYRAC 1 cut(s) 567
HindIII AAGCTT 1 cut(s) 788
HinfI GANTC 6 cut(s) 11, 446, 518, 568, 577, 616
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 2 cut(s) 567, 782
Hpy188I TCNGA 4 cut(s) 114, 282, 417, 436
Hpy188III TCNNGA 2 cut(s) 259, 429
Hpy8I GTNNAC 2 cut(s) 567, 782
HpyAV CCTTC 2 cut(s) 588, 727
HpyCH4III ACNGT 3 cut(s) 388, 413, 767
HpyCH4IV ACGT 2 cut(s) 438, 638
HpyCH4V TGCA 6 cut(s) 97, 180, 464, 646, 718, 772
HpyF10VI GCNNNNNNNGC 9 cut(s) 88, 97, 153, 162, 221, 333, 450, 652, 655
HpyF3I CTNAG 3 cut(s) 83, 362, 666
HpySE526I ACGT 2 cut(s) 438, 638
Hsp92I GRCGYC 3 cut(s) 315, 438, 638
Hsp92II CATG 4 cut(s) 304, 709, 754, 763
HspAI GCGC 1 cut(s) 108
Kpn2I TCCGGA 1 cut(s) 428
KroI GCCGGC 1 cut(s) 165
KroNI GCCGGC 1 cut(s) 167
KspI CCGCGG 1 cut(s) 406
Kzo9I GATC 6 cut(s) 40, 138, 255, 342, 431, 543
LmnI GCTCC 6 cut(s) 60, 174, 202, 234, 349, 559
Lsp1109I GCAGC 5 cut(s) 109, 658, 661, 664, 667
LweI GCATC 1 cut(s) 361
MaeII ACGT 2 cut(s) 438, 638
MaeIII GTNAC 1 cut(s) 585
MalI GATC 6 cut(s) 42, 140, 257, 344, 433, 545
MboI GATC 6 cut(s) 40, 138, 255, 342, 431, 543
MboII GAAGA 4 cut(s) 80, 320, 385, 638
MflI RGATCY 1 cut(s) 431
MhlI GDGCHC 2 cut(s) 65, 207
MlyI GAGTC 5 cut(s) 440, 527, 562, 571, 610
MmeI TCCRAC 3 cut(s) 18, 440, 459
MroI TCCGGA 1 cut(s) 428
MroNI GCCGGC 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 1 cut(s) 48
MspA1I CMGCKG 3 cut(s) 22, 100, 405
MspR9I CCNGG 4 cut(s) 144, 226, 479, 591
MvaI CCWGG 3 cut(s) 226, 479, 591
MvnI CGCG 2 cut(s) 383, 405
MwoI GCNNNNNNNGC 9 cut(s) 88, 97, 153, 162, 221, 333, 450, 652, 655
NaeI GCCGGC 1 cut(s) 167
NciI CCSGG 1 cut(s) 144
NcoI CCATGG 1 cut(s) 300
NdeII GATC 6 cut(s) 40, 138, 255, 342, 431, 543
NgoMIV GCCGGC 1 cut(s) 165
NlaIII CATG 4 cut(s) 304, 709, 754, 763
NlaIV GGNNCC 7 cut(s) 54, 62, 170, 230, 433, 459, 561
NmeAIII GCCGAG 2 cut(s) 552, 647
PcsI WCGNNNNNNNCGW 2 cut(s) 251, 318
PdiI GCCGGC 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 1 cut(s) 11
Pfl23II CGTACG 1 cut(s) 242
PflFI GACNNNGTC 3 cut(s) 314, 517, 580
PinAI ACCGGT 1 cut(s) 207
Ple19I CGATCG 1 cut(s) 345
PleI GAGTC 5 cut(s) 440, 526, 562, 571, 610
PpsI GAGTC 5 cut(s) 440, 526, 562, 571, 610
Psp6I CCWGG 3 cut(s) 224, 477, 589
PspGI CCWGG 3 cut(s) 224, 477, 589
PspLI CGTACG 1 cut(s) 242
PspN4I GGNNCC 7 cut(s) 54, 62, 170, 230, 433, 459, 561
PspPI GGNCC 6 cut(s) 53, 150, 213, 400, 475, 695
PstI CTGCAG 1 cut(s) 466
PsuI RGATCY 1 cut(s) 431
PsyI GACNNNGTC 3 cut(s) 314, 517, 580
PvuI CGATCG 1 cut(s) 345
RsaI GTAC 3 cut(s) 244, 293, 599
RsaNI GTAC 3 cut(s) 243, 292, 598
Rsr2I CGGWCCG 1 cut(s) 150
RsrII CGGWCCG 1 cut(s) 150
SacII CCGCGG 1 cut(s) 406
SalI GTCGAC 1 cut(s) 565
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 6 cut(s) 40, 138, 255, 342, 431, 543
Sau96I GGNCC 6 cut(s) 53, 150, 213, 400, 475, 695
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 5 cut(s) 440, 527, 562, 571, 610
ScrFI CCNGG 4 cut(s) 144, 226, 479, 591
SduI GDGCHC 2 cut(s) 65, 207
SfaNI GCATC 1 cut(s) 361
SfcI CTRYAG 1 cut(s) 462
Sfr303I CCGCGG 1 cut(s) 406
SgrAI CRCCGGYG 1 cut(s) 207
SgrBI CCGCGG 1 cut(s) 406
SinI GGWCC 1 cut(s) 150
StyD4I CCNGG 4 cut(s) 142, 224, 477, 589
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 3 cut(s) 388, 413, 767
TaiI ACGT 2 cut(s) 441, 641
TaqI TCGA 5 cut(s) 137, 341, 345, 566, 602
TaqII GACCGA 1 cut(s) 620
TatI WGTACW 1 cut(s) 291
TauI GCSGC 5 cut(s) 25, 103, 330, 405, 526
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 3 cut(s) 272, 471, 498
TseI GCWGC 5 cut(s) 97, 646, 649, 652, 655
TspDTI ATGAA 4 cut(s) 567, 694, 776, 783
TspGWI ACGGA 2 cut(s) 260, 530
TspRI CASTG 3 cut(s) 272, 471, 498
Tth111I GACNNNGTC 3 cut(s) 314, 517, 580
VpaK11BI GGWCC 1 cut(s) 150
XmiI GTMKAC 2 cut(s) 566, 781
XmnI GAANNNNTTC 1 cut(s) 15
ZraI GACGTC 2 cut(s) 439, 639
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.