Rmu_sc0011027.1_g000001
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011027.1
Physical Location & Seq
Forward (+)
1657 .. 2517
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011027.1_g000001.1.cds

Sequence Viewer

Length: 861 bp
atggatagcgaatcggttcagcggcaacagagggagttggatcgggttaaggggccgtggagtcctgaagaggacgacttgctgaggaagctggtgcagcggcacggcgctcggaactggacgctgataagcaagtcgattcccggccggtccggcaagtcgtgccggcttcggtggtgcaatcagctctcgccggaggtggagcaccgggcgttcacggcggaggaggacaatattatcgcggcggcgcattccaagttcggcaacaagtgggccaccatagccaggctcctcaacggccgtacggacaatgcgatcaagaaccactggaactccactctgaagcggaagtactcgtccatggcggaagacggcgtcttcggcggaggcggttcgatcgaggagcatcatcaccaccaccacctcaggccggagaagaaatctgcgacggtttcggtgtctggccgcggatacagtccgacgagcccgtccggatccgacgtcagcgactccggcgtggtgcctgcagtgtcgtcggcgcaggtgttcaggccagtggcgagagcagtgttgaggacggagtcgccgtcgagccagaacgaaatgatccacaatgaaccggagccgtcgactctgctgactctgtcgttacctggaggctactcgaccgagttggcgactcgccgagaagaaagaacgacgtcgttgcagcagcagcagaaggaggctgagaatgagaacagaacgatgtcgtttgggccggagttcatgtcttttatgcaggagatgattaggagggaggttaggaactacatggatgacatgaacggtcagcactttggtatacccaagctttcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

286

Amino Acids

32.19

Weight (kDa)

8.53

Isoelectric Point (pI)

64.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 532
AasI GACNNNNNNGTC 1 cut(s) 487
AatII GACGTC 2 cut(s) 504, 704
Acc36I ACCTGC 1 cut(s) 532
AccB1I GGYRCC 1 cut(s) 520
AccI GTMKAC 2 cut(s) 629, 844
AccII CGCG 2 cut(s) 242, 468
AccIII TCCGGA 1 cut(s) 491
AclWI GGATC 4 cut(s) 48, 489, 502, 601
AcoI YGGCCR 3 cut(s) 145, 298, 463
AcuI CTGAAG 2 cut(s) 87, 362
AcyI GRCGYC 3 cut(s) 375, 501, 701
AfaI GTAC 2 cut(s) 304, 353
AfiI CCNNNNNNNGG 2 cut(s) 285, 430
AjnI CCWGG 2 cut(s) 284, 652
AluBI AGCT 3 cut(s) 91, 187, 853
AluI AGCT 3 cut(s) 91, 187, 853
Alw21I GWGCWC 1 cut(s) 207
AlwI GGATC 4 cut(s) 48, 489, 502, 601
Aor13HI TCCGGA 1 cut(s) 491
AoxI GGCC 8 cut(s) 53, 145, 273, 298, 428, 463, 551, 758
ApeKI GCWGC 4 cut(s) 97, 709, 712, 715
ArsI GACNNNNNNTTYG 2 cut(s) 362, 394
Asp700I GAANNNNTTC 1 cut(s) 15
AspLEI GCGC 3 cut(s) 110, 250, 541
AspS9I GGNCC 4 cut(s) 53, 150, 273, 758
AsuC2I CCSGG 2 cut(s) 144, 209
AsuHPI GGTGA 1 cut(s) 404
AvaII GGWCC 1 cut(s) 150
AxyI CCTNAGG 1 cut(s) 425
BamHI GGATCC 1 cut(s) 494
BanI GGYRCC 1 cut(s) 520
BanII GRGCYC 1 cut(s) 488
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
BbsI GAAGAC 2 cut(s) 370, 375
Bbv12I GWGCWC 1 cut(s) 207
BbvCI CCTCAGC 1 cut(s) 83
BbvI GCAGC 4 cut(s) 109, 721, 724, 727
BceAI ACGGC 8 cut(s) 40, 121, 234, 285, 313, 388, 571, 610
BcgI CGANNNNNNTGC 6 cut(s) 92, 126, 516, 550, 688, 722
BciT130I CCWGG 2 cut(s) 286, 654
BciVI GTATCC 1 cut(s) 464
BcnI CCSGG 2 cut(s) 144, 209
BfmI CTRYAG 1 cut(s) 525
BfoI RGCGCY 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 532
BfuI GTATCC 1 cut(s) 464
BglI GCCNNNNNGGC 1 cut(s) 153
BisI GCNGC 9 cut(s) 23, 98, 101, 243, 246, 466, 710, 713, 716
BlsI GCNGC 9 cut(s) 24, 99, 102, 244, 247, 467, 711, 714, 717
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 4 cut(s) 144, 209, 286, 654
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 4 cut(s) 53, 150, 273, 758
BmiI GGNNCC 5 cut(s) 54, 290, 496, 522, 624
BmrFI CCNGG 4 cut(s) 144, 209, 286, 654
BmsI GCATC 1 cut(s) 415
BpiI GAAGAC 2 cut(s) 370, 375
BpmI CTGGAG 1 cut(s) 675
Bpu10I CCTNAGC 1 cut(s) 83
BpuMI CCSGG 2 cut(s) 144, 209
BsaHI GRCGYC 3 cut(s) 375, 501, 701
BsaJI CCNNGG 3 cut(s) 56, 360, 466
BsaWI WCCGGW 2 cut(s) 491, 619
BsaXI ACNNNNNCTCC 6 cut(s) 317, 347, 572, 602, 755, 785
Bsc4I CCNNNNNNNGG 2 cut(s) 285, 430
Bse118I RCCGGY 2 cut(s) 147, 165
Bse1I ACTGG 3 cut(s) 122, 332, 554
Bse21I CCTNAGG 1 cut(s) 425
BseAI TCCGGA 1 cut(s) 491
BseBI CCWGG 2 cut(s) 286, 654
BseDI CCNNGG 3 cut(s) 56, 360, 466
BseGI GGATG 1 cut(s) 823
BseLI CCNNNNNNNGG 2 cut(s) 285, 430
BseMII CTCAG 3 cut(s) 74, 439, 720
BseNI ACTGG 3 cut(s) 122, 332, 554
BseRI GAGGAG 3 cut(s) 239, 281, 416
BseX3I CGGCCG 2 cut(s) 145, 298
BseXI GCAGC 4 cut(s) 109, 721, 724, 727
BsgI GTGCAG 1 cut(s) 116
Bsh1236I CGCG 2 cut(s) 242, 468
Bsh1285I CGRYCG 4 cut(s) 148, 301, 399, 669
BshFI GGCC 8 cut(s) 55, 147, 275, 300, 430, 465, 553, 760
BshNI GGYRCC 1 cut(s) 520
BsiEI CGRYCG 4 cut(s) 148, 301, 399, 669
BsiHKAI GWGCWC 1 cut(s) 207
BsiWI CGTACG 1 cut(s) 302
BslI CCNNNNNNNGG 2 cut(s) 285, 430
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 8 cut(s) 55, 147, 275, 300, 430, 465, 553, 760
Bsp1286I GDGCHC 2 cut(s) 207, 488
Bsp13I TCCGGA 1 cut(s) 491
Bsp143I GATC 5 cut(s) 40, 315, 396, 494, 606
Bsp19I CCATGG 1 cut(s) 360
BspANI GGCC 8 cut(s) 55, 147, 275, 300, 430, 465, 553, 760
BspCNI CTCAG 3 cut(s) 75, 438, 721
BspEI TCCGGA 1 cut(s) 491
BspFNI CGCG 2 cut(s) 242, 468
BspLI GGNNCC 5 cut(s) 54, 290, 496, 522, 624
BspMAI CTGCAG 1 cut(s) 529
BspMI ACCTGC 1 cut(s) 532
BspPI GGATC 4 cut(s) 48, 489, 502, 601
BspT107I GGYRCC 1 cut(s) 520
BsrFI RCCGGY 2 cut(s) 147, 165
BsrI ACTGG 3 cut(s) 122, 332, 554
BssAI RCCGGY 2 cut(s) 147, 165
BssECI CCNNGG 3 cut(s) 56, 360, 466
BssMI GATC 5 cut(s) 40, 315, 396, 494, 606
BssNAI GTATAC 1 cut(s) 845
BssNI GRCGYC 3 cut(s) 375, 501, 701
BssT1I CCWWGG 1 cut(s) 360
Bst1107I GTATAC 1 cut(s) 845
Bst2UI CCWGG 2 cut(s) 286, 654
Bst4CI ACNGT 3 cut(s) 451, 476, 830
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 3 cut(s) 375, 501, 701
BstAPI GCANNNNNTGC 1 cut(s) 162
BstC8I GCNNGC 2 cut(s) 167, 525
BstDEI CTNAG 3 cut(s) 83, 425, 729
BstDSI CCRYGG 3 cut(s) 56, 360, 466
BstF5I GGATG 1 cut(s) 823
BstFNI CGCG 2 cut(s) 242, 468
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 3 cut(s) 110, 250, 541
BstKTI GATC 5 cut(s) 43, 318, 399, 497, 609
BstMBI GATC 5 cut(s) 40, 315, 396, 494, 606
BstMCI CGRYCG 4 cut(s) 148, 301, 399, 669
BstMWI GCNNNNNNNGC 9 cut(s) 88, 97, 153, 162, 218, 281, 381, 513, 715
BstNI CCWGG 2 cut(s) 286, 654
BstSCI CCNGG 4 cut(s) 142, 207, 284, 652
BstSFI CTRYAG 1 cut(s) 525
BstUI CGCG 2 cut(s) 242, 468
BstV1I GCAGC 4 cut(s) 109, 721, 724, 727
BstV2I GAAGAC 2 cut(s) 370, 375
BstX2I RGATCY 1 cut(s) 494
BstYI RGATCY 1 cut(s) 494
BstZ17I GTATAC 1 cut(s) 845
BstZI CGGCCG 2 cut(s) 145, 298
Bsu36I CCTNAGG 1 cut(s) 425
BsuI GTATCC 1 cut(s) 464
BsuRI GGCC 8 cut(s) 55, 147, 275, 300, 430, 465, 553, 760
BtgI CCRYGG 3 cut(s) 56, 360, 466
BtsCI GGATG 1 cut(s) 823
BtsI GCAGTG 2 cut(s) 534, 573
BtsIMutI CAGTG 4 cut(s) 325, 534, 561, 573
BveI ACCTGC 1 cut(s) 532
Cac8I GCNNGC 2 cut(s) 167, 525
CfoI GCGC 3 cut(s) 110, 250, 541
Cfr10I RCCGGY 2 cut(s) 147, 165
Cfr13I GGNCC 4 cut(s) 53, 150, 273, 758
Cfr42I CCGCGG 1 cut(s) 469
CpoI CGGWCCG 1 cut(s) 150
CseI GACGC 2 cut(s) 130, 364
Csp6I GTAC 2 cut(s) 303, 352
CspI CGGWCCG 1 cut(s) 150
CviAII CATG 4 cut(s) 361, 769, 814, 823
CviQI GTAC 2 cut(s) 303, 352
DdeI CTNAG 3 cut(s) 83, 425, 729
DpnI GATC 5 cut(s) 42, 317, 398, 496, 608
DpnII GATC 5 cut(s) 40, 315, 396, 494, 606
DrdI GACNNNNNNGTC 1 cut(s) 487
DseDI GACNNNNNNGTC 1 cut(s) 487
EaeI YGGCCR 3 cut(s) 145, 298, 463
EagI CGGCCG 2 cut(s) 145, 298
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
EciI GGCGGA 3 cut(s) 236, 380, 399
EclXI CGGCCG 2 cut(s) 145, 298
Eco130I CCWWGG 1 cut(s) 360
Eco24I GRGCYC 1 cut(s) 488
Eco47I GGWCC 1 cut(s) 150
Eco52I CGGCCG 2 cut(s) 145, 298
Eco57I CTGAAG 2 cut(s) 87, 362
Eco81I CCTNAGG 1 cut(s) 425
EcoRII CCWGG 2 cut(s) 284, 652
EcoT14I CCWWGG 1 cut(s) 360
EcoT38I GRGCYC 1 cut(s) 488
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 4 cut(s) 364, 772, 817, 826
FaiI YATR 8 cut(s) 281, 362, 770, 779, 815, 824, 845, 859
FatI CATG 4 cut(s) 360, 768, 813, 822
FblI GTMKAC 2 cut(s) 629, 844
Fnu4HI GCNGC 9 cut(s) 23, 98, 101, 243, 246, 466, 710, 713, 716
FokI GGATG 1 cut(s) 830
FriOI GRGCYC 1 cut(s) 488
Fsp4HI GCNGC 9 cut(s) 23, 98, 101, 243, 246, 466, 710, 713, 716
GlaI GCGC 3 cut(s) 109, 249, 540
GluI GCNGC 9 cut(s) 23, 98, 101, 243, 246, 466, 710, 713, 716
GsuI CTGGAG 1 cut(s) 675
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 8 cut(s) 55, 147, 275, 300, 430, 465, 553, 760
HgaI GACGC 2 cut(s) 130, 364
HhaI GCGC 3 cut(s) 110, 250, 541
Hin1I GRCGYC 3 cut(s) 375, 501, 701
Hin1II CATG 4 cut(s) 364, 772, 817, 826
Hin6I GCGC 3 cut(s) 108, 248, 539
HinP1I GCGC 3 cut(s) 108, 248, 539
HincII GTYRAC 1 cut(s) 630
HindII GTYRAC 1 cut(s) 630
HindIII AAGCTT 1 cut(s) 851
HinfI GANTC 8 cut(s) 11, 61, 139, 509, 581, 631, 640, 679
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 3 cut(s) 216, 630, 845
Hpy188I TCNGA 4 cut(s) 114, 342, 480, 499
Hpy188III TCNNGA 3 cut(s) 65, 319, 492
Hpy8I GTNNAC 3 cut(s) 216, 630, 845
Hpy99I CGWCG 8 cut(s) 451, 484, 503, 538, 592, 631, 703, 706
HpyAV CCTTC 1 cut(s) 715
HpyCH4III ACNGT 3 cut(s) 451, 476, 830
HpyCH4IV ACGT 2 cut(s) 501, 701
HpyCH4V TGCA 5 cut(s) 97, 180, 527, 709, 781
HpyF10VI GCNNNNNNNGC 9 cut(s) 88, 97, 153, 162, 218, 281, 381, 513, 715
HpyF3I CTNAG 3 cut(s) 83, 425, 729
HpySE526I ACGT 2 cut(s) 501, 701
Hsp92I GRCGYC 3 cut(s) 375, 501, 701
Hsp92II CATG 4 cut(s) 364, 772, 817, 826
HspAI GCGC 3 cut(s) 108, 248, 539
Kpn2I TCCGGA 1 cut(s) 491
KroI GCCGGC 1 cut(s) 165
KroNI GCCGGC 1 cut(s) 167
KspI CCGCGG 1 cut(s) 469
Kzo9I GATC 5 cut(s) 40, 315, 396, 494, 606
LmnI GCTCC 4 cut(s) 202, 294, 403, 622
Lsp1109I GCAGC 4 cut(s) 109, 721, 724, 727
LweI GCATC 1 cut(s) 415
MaeII ACGT 2 cut(s) 501, 701
MaeIII GTNAC 1 cut(s) 648
MalI GATC 5 cut(s) 42, 317, 398, 496, 608
MboI GATC 5 cut(s) 40, 315, 396, 494, 606
MboII GAAGA 5 cut(s) 80, 370, 380, 448, 701
MflI RGATCY 1 cut(s) 494
MhlI GDGCHC 2 cut(s) 207, 488
MlyI GAGTC 6 cut(s) 70, 503, 590, 625, 634, 673
MmeI TCCRAC 3 cut(s) 18, 503, 522
MroI TCCGGA 1 cut(s) 491
MroNI GCCGGC 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 1 cut(s) 48
MspA1I CMGCKG 3 cut(s) 22, 100, 468
MspR9I CCNGG 4 cut(s) 144, 209, 286, 654
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 2 cut(s) 286, 654
MvnI CGCG 2 cut(s) 242, 468
MwoI GCNNNNNNNGC 9 cut(s) 88, 97, 153, 162, 218, 281, 381, 513, 715
NaeI GCCGGC 1 cut(s) 167
NciI CCSGG 2 cut(s) 144, 209
NcoI CCATGG 1 cut(s) 360
NdeII GATC 5 cut(s) 40, 315, 396, 494, 606
NgoMIV GCCGGC 1 cut(s) 165
NlaIII CATG 4 cut(s) 364, 772, 817, 826
NlaIV GGNNCC 5 cut(s) 54, 290, 496, 522, 624
NmeAIII GCCGAG 1 cut(s) 710
PaqCI CACCTGC 1 cut(s) 532
PcsI WCGNNNNNNNCGW 2 cut(s) 311, 584
PctI GAATGC 1 cut(s) 250
PdiI GCCGGC 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 11, 139
Pfl23II CGTACG 1 cut(s) 302
PflFI GACNNNGTC 3 cut(s) 374, 580, 643
PkrI GCNGC 9 cut(s) 24, 99, 102, 244, 247, 467, 711, 714, 717
Ple19I CGATCG 1 cut(s) 399
PleI GAGTC 6 cut(s) 69, 503, 589, 625, 634, 673
PpsI GAGTC 6 cut(s) 69, 503, 589, 625, 634, 673
Psp6I CCWGG 2 cut(s) 284, 652
PspGI CCWGG 2 cut(s) 284, 652
PspLI CGTACG 1 cut(s) 302
PspN4I GGNNCC 5 cut(s) 54, 290, 496, 522, 624
PspPI GGNCC 4 cut(s) 53, 150, 273, 758
PstI CTGCAG 1 cut(s) 529
PsuI RGATCY 1 cut(s) 494
PsyI GACNNNGTC 3 cut(s) 374, 580, 643
PvuI CGATCG 1 cut(s) 399
RsaI GTAC 2 cut(s) 304, 353
RsaNI GTAC 2 cut(s) 303, 352
Rsr2I CGGWCCG 1 cut(s) 150
RsrII CGGWCCG 1 cut(s) 150
SacII CCGCGG 1 cut(s) 469
SalI GTCGAC 1 cut(s) 628
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 9 cut(s) 23, 98, 101, 243, 246, 466, 710, 713, 716
Sau3AI GATC 5 cut(s) 40, 315, 396, 494, 606
Sau96I GGNCC 4 cut(s) 53, 150, 273, 758
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 6 cut(s) 70, 503, 590, 625, 634, 673
ScrFI CCNGG 4 cut(s) 144, 209, 286, 654
SduI GDGCHC 2 cut(s) 207, 488
SfaNI GCATC 1 cut(s) 415
SfcI CTRYAG 1 cut(s) 525
Sfr303I CCGCGG 1 cut(s) 469
SgrBI CCGCGG 1 cut(s) 469
SinI GGWCC 1 cut(s) 150
SspI AATATT 1 cut(s) 235
StyD4I CCNGG 4 cut(s) 142, 207, 284, 652
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 3 cut(s) 451, 476, 830
TaiI ACGT 2 cut(s) 504, 704
TaqI TCGA 6 cut(s) 137, 395, 399, 590, 629, 665
TaqII GACCGA 1 cut(s) 683
TatI WGTACW 1 cut(s) 351
TauI GCSGC 5 cut(s) 25, 103, 245, 248, 468
TfiI GAWTC 2 cut(s) 11, 139
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 4 cut(s) 332, 534, 561, 573
TseI GCWGC 4 cut(s) 97, 709, 712, 715
TspDTI ATGAA 4 cut(s) 630, 757, 839, 846
TspGWI ACGGA 2 cut(s) 320, 593
TspRI CASTG 4 cut(s) 332, 534, 561, 573
Tth111I GACNNNGTC 3 cut(s) 374, 580, 643
VpaK11BI GGWCC 1 cut(s) 150
XmiI GTMKAC 2 cut(s) 629, 844
XmnI GAANNNNTTC 1 cut(s) 15
ZraI GACGTC 2 cut(s) 502, 702
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.