Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001796

Physical Location & Seq

Genomic Coordinates Reverse (-)

65354831 .. 65355693

Gene Structure 863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G041730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCGAGTAACTGCCTTGCCAGGAAGAATCCCCCATCTCTCAACGGCTAAGACCGGTTACTCAACCGGCTATCACCAGTCACCAAATCCCCTTCCGTATATAAACCTTGCACCTGTGTCACCTCCTCTCTCTCAGATCAAAGAAGAAGACTATCAATCCATGGCTTCTTCTTCTTCGACCAAGAAAGCCGCGGCGGATCGGATAAAAGGTCCGTGGAGCCCAGAGGAAGACGAAGCGTTACAGAGGCTGGTCCAGAGCTACGGCCCGAGGAACTGGTCTCTGATCAGCAAATCGATCCCTGGTCGATCCGGTAAGTCGTGCCGGCTACGGTGGTGCAACCAGCTCTCGCCGGAGGTGGAGCACCGGCCGTTTACTCCTGAAGAGGACGACACCATAATTCGAGCCCATGCCCGGTTCGGAAACAAGTGGGCCACCATCTCTCGCTTGCTCAATGGCCGCACCGATAATGCCATTAAGAACCCAAAGGAACTAGTTCAACTTCAACCTCAAGTAATTCAAGCTCAACCTGAAGAAGCTGGAGGTGGAGAGGCGGCGCGTCAGGGCAACCATAACAGTGAGGCGGGGATTGATAAGCAGTTCTTCAGCGCAGAGTTCTTGGATGTGATGCAAGAGATGATCAGAAAGGAAGTGAGAAACTATATGTCTGGGGTTGATCACAATGGGATGTTCATGCACACTGAAGCTGCCATTAGAAACGCAGTTGTAAAGCGGATTGGGATTAGCAAAGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

251

Amino Acids

28.0

Weight (kDa)

9.04

Isoelectric Point (pI)

56.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	69 - 115	7.3e-19	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	72 - 129	1.1e-17	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	122 - 160	1.9e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	124 - 159	2.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23290 AT4G37260 AT5G67300
fragaria_vesca	FvH4_1g16770 FvH4_2g05210 FvH4_2g33810 FvH4_2g33810
malus_domestica	MD02G1179000.v1.1 MD05G1089600.v1.1 MD08G1092000.v1.1 MD15G1076600.v1.1 MD15G1288600.v1.1
prunus_persica	Prupe.1G430000_v2.0.a1 Prupe.6G229000_v2.0.a1 Prupe.8G134900_v2.0.a1
pyrus_communis	pycom02g14500 pycom05g08850 pycom08g07470 pycom15g07140
rosa_chinensis	RchiOBHm_Chr2g0106671 RchiOBHm_Chr6g0255341 RchiOBHm_Chr6g0308731
rosa_laevigata	RLG00000010626 RLG00000014846 RLG00000017529
rosa_multiflora	Rmu_co8261837.1_g000001 Rmu_sc0000871.1_g000019 Rmu_sc0000903.1_g000030 Rmu_sc0004000.1_g000004 Rmu_sc0011027.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136900 Rroxscaffold_7G00159990 Rroxscaffold_7G00210080
rosa_rugosa	Rorug02G0137600 Rorug05G0557500 Rorug06G0367900
rosa_samantha	Rh2BG199800 Rh6AG075800 Rh6AG478900 Rh6BG067700 Rh6BG488500 Rh6CG067400 Rh6CG493800 Rh6DG479400 Rh7BG300900
rosa_wichuraiana	Rw2G014830 Rw6G041730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	191, 556
AciI	CCGC	7 cut(s)	189, 191, 194, 457, 551, 581, 730
AclWI	GGATC	3 cut(s)	204, 289, 300
AcoI	YGGCCR	2 cut(s)	365, 454
AcuI	CTGAAG	4 cut(s)	399, 549, 586, 720
AfiI	CCNNNNNNNGG	1 cut(s)	411
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	3 cut(s)	497, 503, 518
AhlI	ACTAGT	1 cut(s)	490
AjnI	CCWGG	2 cut(s)	19, 298
AluBI	AGCT	5 cut(s)	258, 343, 521, 536, 704
AluI	AGCT	5 cut(s)	258, 343, 521, 536, 704
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	3 cut(s)	204, 289, 300
AlwNI	CAGNNNCTG	1 cut(s)	247
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	4 cut(s)	262, 365, 429, 454
ApeKI	GCWGC	1 cut(s)	704
AsiGI	ACCGGT	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	492
AspLEI	GCGC	2 cut(s)	556, 608
AspS9I	GGNCC	4 cut(s)	209, 250, 263, 429
AsuC2I	CCSGG	1 cut(s)	412
AsuHPI	GGTGA	3 cut(s)	65, 72, 111
AvaI	CYCGRG	1 cut(s)	265
AvaII	GGWCC	2 cut(s)	209, 250
BanII	GRGCYC	2 cut(s)	221, 406
BbsI	GAAGAC	2 cut(s)	153, 234
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	691
BccI	CCATC	2 cut(s)	42, 443
BceAI	ACGGC	3 cut(s)	60, 277, 352
BciT130I	CCWGG	2 cut(s)	21, 300
BclI	TGATCA	3 cut(s)	282, 636, 673
BcnI	CCSGG	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	282
BcuI	ACTAGT	1 cut(s)	490
BfaI	CTAG	1 cut(s)	491
BisI	GCNGC	5 cut(s)	189, 192, 457, 552, 705
BlsI	GCNGC	5 cut(s)	190, 193, 458, 553, 706
Bme1390I	CCNGG	3 cut(s)	21, 300, 412
Bme18I	GGWCC	2 cut(s)	209, 250
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	4 cut(s)	209, 250, 263, 429
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	3 cut(s)	21, 300, 412
BmsI	GCATC	1 cut(s)	615
BpiI	GAAGAC	2 cut(s)	153, 234
BpmI	CTGGAG	1 cut(s)	558
BpuEI	CTTGAG	1 cut(s)	492
BpuMI	CCSGG	1 cut(s)	412
Bsa29I	ATCGAT	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	282
BsaJI	CCNNGG	5 cut(s)	159, 189, 212, 266, 298
BsaWI	WCCGGW	2 cut(s)	53, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
Bse118I	RCCGGY	4 cut(s)	53, 65, 321, 363
Bse1I	ACTGG	2 cut(s)	76, 278
BseBI	CCWGG	2 cut(s)	21, 300
BseCI	ATCGAT	1 cut(s)	293
BseDI	CCNNGG	5 cut(s)	159, 189, 212, 266, 298
BseGI	GGATG	2 cut(s)	625, 690
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	2 cut(s)	76, 278
BseRI	GAGGAG	1 cut(s)	114
BseX3I	CGGCCG	1 cut(s)	365
BseXI	GCAGC	1 cut(s)	691
Bsh1236I	CGCG	2 cut(s)	191, 556
Bsh1285I	CGRYCG	1 cut(s)	368
BshFI	GGCC	4 cut(s)	264, 367, 431, 456
BshTI	ACCGGT	1 cut(s)	53
BshVI	ATCGAT	1 cut(s)	293
BsiEI	CGRYCG	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	7 cut(s)	54, 66, 309, 322, 350, 364, 412
BslI	CCNNNNNNNGG	1 cut(s)	411
BsmAI	GTCTC	1 cut(s)	282
BsnI	GGCC	4 cut(s)	264, 367, 431, 456
Bso31I	GGTCTC	1 cut(s)	282
BsoBI	CYCGRG	1 cut(s)	265
Bsp1286I	GDGCHC	3 cut(s)	221, 363, 406
Bsp143I	GATC	7 cut(s)	135, 196, 282, 294, 305, 636, 673
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	7 cut(s)	189, 191, 194, 457, 551, 581, 730
BspANI	GGCC	4 cut(s)	264, 367, 431, 456
BspCNI	CTCAG	1 cut(s)	145
BspDI	ATCGAT	1 cut(s)	293
BspFNI	CGCG	2 cut(s)	191, 556
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	3 cut(s)	204, 289, 300
BspTNI	GGTCTC	1 cut(s)	282
BsrFI	RCCGGY	4 cut(s)	53, 65, 321, 363
BsrI	ACTGG	2 cut(s)	76, 278
BssAI	RCCGGY	4 cut(s)	53, 65, 321, 363
BssECI	CCNNGG	5 cut(s)	159, 189, 212, 266, 298
BssMI	GATC	7 cut(s)	135, 196, 282, 294, 305, 636, 673
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	2 cut(s)	21, 300
Bst4CI	ACNGT	2 cut(s)	330, 575
Bst6I	CTCTTC	1 cut(s)	375
BstC8I	GCNNGC	2 cut(s)	323, 446
BstDEI	CTNAG	2 cut(s)	48, 132
BstDSI	CCRYGG	3 cut(s)	159, 189, 212
BstF5I	GGATG	2 cut(s)	625, 690
BstFNI	CGCG	2 cut(s)	191, 556
BstHHI	GCGC	2 cut(s)	556, 608
BstKTI	GATC	7 cut(s)	138, 199, 285, 297, 308, 639, 676
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	7 cut(s)	135, 196, 282, 294, 305, 636, 673
BstMCI	CGRYCG	1 cut(s)	368
BstNI	CCWGG	2 cut(s)	21, 300
BstSCI	CCNGG	3 cut(s)	19, 298, 410
BstUI	CGCG	2 cut(s)	191, 556
BstV1I	GCAGC	1 cut(s)	691
BstV2I	GAAGAC	2 cut(s)	153, 234
BstZI	CGGCCG	1 cut(s)	365
Bsu15I	ATCGAT	1 cut(s)	293
BsuRI	GGCC	4 cut(s)	264, 367, 431, 456
BsuTUI	ATCGAT	1 cut(s)	293
BtgI	CCRYGG	3 cut(s)	159, 189, 212
BtsCI	GGATG	2 cut(s)	625, 690
BtsIMutI	CAGTG	2 cut(s)	580, 696
Cac8I	GCNNGC	2 cut(s)	323, 446
CaiI	CAGNNNCTG	1 cut(s)	247
CfoI	GCGC	2 cut(s)	556, 608
Cfr10I	RCCGGY	4 cut(s)	53, 65, 321, 363
Cfr13I	GGNCC	4 cut(s)	209, 250, 263, 429
Cfr42I	CCGCGG	1 cut(s)	192
ClaI	ATCGAT	1 cut(s)	293
CseI	GACGC	1 cut(s)	545
CspAI	ACCGGT	1 cut(s)	53
CviAII	CATG	3 cut(s)	160, 407, 691
DdeI	CTNAG	2 cut(s)	48, 132
DpnI	GATC	7 cut(s)	137, 198, 284, 296, 307, 638, 675
DpnII	GATC	7 cut(s)	135, 196, 282, 294, 305, 636, 673
EaeI	YGGCCR	2 cut(s)	365, 454
EagI	CGGCCG	1 cut(s)	365
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
EciI	GGCGGA	1 cut(s)	209
EclXI	CGGCCG	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	159
Eco24I	GRGCYC	2 cut(s)	221, 406
Eco31I	GGTCTC	1 cut(s)	282
Eco47I	GGWCC	2 cut(s)	209, 250
Eco52I	CGGCCG	1 cut(s)	365
Eco57I	CTGAAG	4 cut(s)	399, 549, 586, 720
Eco88I	CYCGRG	1 cut(s)	265
EcoRII	CCWGG	2 cut(s)	19, 298
EcoT14I	CCWWGG	1 cut(s)	159
EcoT38I	GRGCYC	2 cut(s)	221, 406
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	3 cut(s)	163, 410, 694
FaiI	YATR	9 cut(s)	99, 101, 161, 395, 408, 570, 660, 662, 692
FalI	AAGNNNNNCTT	2 cut(s)	584, 616
FatI	CATG	3 cut(s)	159, 406, 690
FauI	CCCGC	1 cut(s)	574
FbaI	TGATCA	3 cut(s)	282, 636, 673
Fnu4HI	GCNGC	5 cut(s)	189, 192, 457, 552, 705
FokI	GGATG	2 cut(s)	632, 697
FriOI	GRGCYC	2 cut(s)	221, 406
Fsp4HI	GCNGC	5 cut(s)	189, 192, 457, 552, 705
FspBI	CTAG	1 cut(s)	491
GlaI	GCGC	2 cut(s)	555, 607
GluI	GCNGC	5 cut(s)	189, 192, 457, 552, 705
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	4 cut(s)	264, 367, 431, 456
HapII	CCGG	7 cut(s)	54, 66, 309, 322, 350, 364, 412
HgaI	GACGC	1 cut(s)	545
HhaI	GCGC	2 cut(s)	556, 608
Hin1II	CATG	3 cut(s)	163, 410, 694
Hin6I	GCGC	2 cut(s)	554, 606
HinP1I	GCGC	2 cut(s)	554, 606
HinfI	GANTC	1 cut(s)	27
HpaII	CCGG	7 cut(s)	54, 66, 309, 322, 350, 364, 412
HphI	GGTGA	3 cut(s)	65, 72, 111
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	5 cut(s)	135, 201, 282, 419, 641
Hpy188III	TCNNGA	2 cut(s)	253, 377
Hpy8I	GTNNAC	1 cut(s)	372
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	2 cut(s)	330, 575
HpyCH4V	TGCA	4 cut(s)	110, 336, 628, 694
HpyF3I	CTNAG	2 cut(s)	48, 132
Hsp92II	CATG	3 cut(s)	163, 410, 694
HspAI	GCGC	2 cut(s)	554, 606
KroI	GCCGGC	1 cut(s)	321
KroNI	GCCGGC	1 cut(s)	323
Ksp22I	TGATCA	3 cut(s)	282, 636, 673
KspI	CCGCGG	1 cut(s)	192
Kzo9I	GATC	7 cut(s)	135, 196, 282, 294, 305, 636, 673
LmnI	GCTCC	2 cut(s)	216, 358
Lsp1109I	GCAGC	1 cut(s)	691
LweI	GCATC	1 cut(s)	615
MaeI	CTAG	1 cut(s)	491
MaeIII	GTNAC	5 cut(s)	7, 56, 78, 117, 237
MalI	GATC	7 cut(s)	137, 198, 284, 296, 307, 638, 675
MboI	GATC	7 cut(s)	135, 196, 282, 294, 305, 636, 673
MhlI	GDGCHC	3 cut(s)	221, 363, 406
MluCI	AATT	2 cut(s)	396, 513
MroNI	GCCGGC	1 cut(s)	321
MroXI	GAANNNNTTC	1 cut(s)	492
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	7 cut(s)	54, 66, 309, 322, 350, 364, 412
MspR9I	CCNGG	3 cut(s)	21, 300, 412
MvaI	CCWGG	2 cut(s)	21, 300
MvnI	CGCG	2 cut(s)	191, 556
NaeI	GCCGGC	1 cut(s)	323
NciI	CCSGG	1 cut(s)	412
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	7 cut(s)	135, 196, 282, 294, 305, 636, 673
NgoMIV	GCCGGC	1 cut(s)	321
NlaIII	CATG	3 cut(s)	163, 410, 694
NlaIV	GGNNCC	1 cut(s)	218
NmuCI	GTSAC	2 cut(s)	78, 117
PdiI	GCCGGC	1 cut(s)	323
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	1 cut(s)	27
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	5 cut(s)	190, 193, 458, 553, 706
Psp6I	CCWGG	2 cut(s)	19, 298
PspGI	CCWGG	2 cut(s)	19, 298
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	4 cut(s)	209, 250, 263, 429
PstNI	CAGNNNCTG	1 cut(s)	247
RseI	CAYNNNNRTG	1 cut(s)	573
SacII	CCGCGG	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	5 cut(s)	189, 192, 457, 552, 705
Sau3AI	GATC	7 cut(s)	135, 196, 282, 294, 305, 636, 673
Sau96I	GGNCC	4 cut(s)	209, 250, 263, 429
ScrFI	CCNGG	3 cut(s)	21, 300, 412
SduI	GDGCHC	3 cut(s)	221, 363, 406
SfaNI	GCATC	1 cut(s)	615
Sfr303I	CCGCGG	1 cut(s)	192
SgrBI	CCGCGG	1 cut(s)	192
SinI	GGWCC	2 cut(s)	209, 250
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	507
SmoI	CTYRAG	1 cut(s)	507
SpeI	ACTAGT	1 cut(s)	490
Sse9I	AATT	2 cut(s)	396, 513
SsiI	CCGC	7 cut(s)	189, 191, 194, 457, 551, 581, 730
SspMI	CTAG	1 cut(s)	491
StyD4I	CCNGG	3 cut(s)	19, 298, 410
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	330, 575
TaqI	TCGA	4 cut(s)	176, 293, 304, 400
TasI	AATT	2 cut(s)	396, 513
TauI	GCSGC	4 cut(s)	191, 194, 459, 554
TfiI	GAWTC	1 cut(s)	27
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	2 cut(s)	580, 703
TseFI	GTSAC	2 cut(s)	78, 117
TseI	GCWGC	1 cut(s)	704
Tsp45I	GTSAC	2 cut(s)	78, 117
TspDTI	ATGAA	1 cut(s)	679
TspGWI	ACGGA	2 cut(s)	84, 201
TspRI	CASTG	2 cut(s)	580, 703
VpaK11BI	GGWCC	2 cut(s)	209, 250
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.