MD15G1076600.v1.1
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
5196988 .. 5197941
954 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1076600.v1.1.491

Sequence Viewer

Length: 954 bp
ATGGCTTCCACAAAGAAGGTGGTGGATCGGATAAAGGGTCCATGGAGCCCCGAGGAAGACGAAGCGTTACAGAATCTGGTCAAGATCTACGGCCCAAGAAACTGGTCGCTGATCAGCAAGTCGATTCCTGGTCGATCCGGCAAGTCTTGCCGTCTGCGGTGGTGCAACCAGCTCTCCCCGGAGGTGGAGCACCGCCCCTTCAGTCCCGAAGAGGACGACACCTTAATCAGGGCCCACGCCCGGTTCGGAAACAAGTGGGCCACCATCGCCCGGTTGCTCAACGGCCGCACCGATAACGCCATAAAGAACCACTGGAACTCCACCCTCAAGCGCAAATGCTCCTCCATGTCCGAAGATTTGTGCTCCGACGTCCATGACCACCCGCCACACAAAAGATCCGCCAGCGTCGGTGCCGTTTCGGGTACGGGTCTCTATTTTAACCCGGGTAGCCCGTCCGGATCCGATTTGAGCGATTCTAGCTTGCACGGCGGTGTCTCTCCCTCGTCTCAGGTCTTCACCCCCATTGCGAGACCCGTACCTCCTCCCATTGCTCCGCCGCCGATGGAGGCCGCGACATCAGCTGTGGCCGTTGATCCACCCACCTCGCTCAGCCTCTCGCTTCCCGGATCCGAGTCGGAGTCGTGTGACGGGTCGAATCATATGGGGTCCGGATTCGGATCCAATCCGATTGTTGGTCCCACCCAGATGGTAGAGCAACCACATGAGGTAGCAGCTCCACCGCCGGTGGTAGGATTGCTGCCGCCGCCGCGTCAGAGCAATTTGAACAACAATCAGCAGTTTTTCAGCTCGGAGTTCCTGGATGTGATGCAGGAGATGATCAGGAAGGAGGTGAGGAACTACATGACGGGGATTGAGCAGAAGGGGCAGTGCATGCAGACTGAAGCCATCCGAAACGCTGTCATAAAGCGTATCGGGATTAGCAAAATCGAGTAG

Protein Analysis

318

Amino Acids

34.45

Weight (kDa)

7.68

Isoelectric Point (pI)

58.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 12 - 58 1.3e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 15 - 75 1.3e-17 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 65 - 108 1.7e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 67 - 114 1.8e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 372
AccB1I GGYRCC 1 cut(s) 410
AccII CGCG 2 cut(s) 572, 769
AccIII TCCGGA 2 cut(s) 455, 668
AcoI YGGCCR 2 cut(s) 283, 585
AcuI CTGAAG 2 cut(s) 184, 921
AcyI GRCGYC 1 cut(s) 369
AfaI GTAC 2 cut(s) 424, 537
AfiI CCNNNNNNNGG 6 cut(s) 184, 228, 240, 270, 692, 749
AgsI TTSAA 1 cut(s) 784
AjnI CCWGG 2 cut(s) 127, 816
AleI CACNNNNGTG 1 cut(s) 489
AluBI AGCT 5 cut(s) 172, 480, 581, 734, 807
AluI AGCT 5 cut(s) 172, 480, 581, 734, 807
Alw21I GWGCWC 2 cut(s) 192, 365
Alw26I GTCTC 4 cut(s) 434, 499, 510, 523
AlwNI CAGNNNCTG 1 cut(s) 76
Ama87I CYCGRG 2 cut(s) 50, 442
Aor13HI TCCGGA 2 cut(s) 455, 668
AoxI GGCC 6 cut(s) 91, 231, 258, 283, 567, 585
ApaI GGGCCC 1 cut(s) 235
ApeKI GCWGC 2 cut(s) 731, 757
AspLEI GCGC 1 cut(s) 333
AspS9I GGNCC 7 cut(s) 38, 92, 231, 232, 258, 666, 695
AsuC2I CCSGG 6 cut(s) 179, 241, 271, 443, 444, 624
AsuHPI GGTGA 2 cut(s) 508, 862
AvaI CYCGRG 2 cut(s) 50, 442
AvaII GGWCC 3 cut(s) 38, 666, 695
BaeGI GKGCMC 1 cut(s) 235
BamHI GGATCC 3 cut(s) 458, 626, 677
BanI GGYRCC 1 cut(s) 410
BanII GRGCYC 2 cut(s) 50, 235
BbsI GAAGAC 2 cut(s) 63, 505
Bbv12I GWGCWC 2 cut(s) 192, 365
BbvI GCAGC 2 cut(s) 743, 744
BccI CCATC 4 cut(s) 272, 556, 700, 914
BceAI ACGGC 6 cut(s) 106, 135, 298, 398, 502, 572
BciT130I CCWGG 2 cut(s) 129, 818
BclI TGATCA 2 cut(s) 111, 837
BcnI CCSGG 6 cut(s) 179, 241, 271, 443, 444, 624
BcoDI GTCTC 4 cut(s) 434, 499, 510, 523
BfaI CTAG 1 cut(s) 477
BglII AGATCT 1 cut(s) 84
BisI GCNGC 8 cut(s) 286, 557, 570, 732, 758, 761, 764, 767
BlpI GCTNAGC 1 cut(s) 608
BlsI GCNGC 8 cut(s) 287, 558, 571, 733, 759, 762, 765, 768
Bme1390I CCNGG 8 cut(s) 129, 179, 241, 271, 443, 444, 624, 818
Bme18I GGWCC 3 cut(s) 38, 666, 695
BmeT110I CYCGRG 2 cut(s) 50, 442
BmgT120I GGNCC 7 cut(s) 38, 92, 231, 232, 258, 666, 695
BmiI GGNNCC 9 cut(s) 39, 47, 233, 412, 460, 628, 667, 679, 697
BmrFI CCNGG 8 cut(s) 129, 179, 241, 271, 443, 444, 624, 818
BmsI GCATC 1 cut(s) 816
BpiI GAAGAC 2 cut(s) 63, 505
Bpu1102I GCTNAGC 1 cut(s) 608
BpuEI CTTGAG 1 cut(s) 311
BpuMI CCSGG 6 cut(s) 179, 241, 271, 443, 444, 624
BsaBI GATNNNNATC 1 cut(s) 676
BsaHI GRCGYC 1 cut(s) 369
BsaI GGTCTC 2 cut(s) 434, 523
BsaJI CCNNGG 4 cut(s) 41, 51, 177, 442
BsaWI WCCGGW 2 cut(s) 455, 668
BsaXI ACNNNNNCTCC 4 cut(s) 158, 188, 302, 332
Bsc4I CCNNNNNNNGG 6 cut(s) 184, 228, 240, 270, 692, 749
Bse118I RCCGGY 1 cut(s) 742
Bse1I ACTGG 2 cut(s) 107, 317
Bse3DI GCAATG 2 cut(s) 522, 546
Bse8I GATNNNNATC 1 cut(s) 676
BseAI TCCGGA 2 cut(s) 455, 668
BseBI CCWGG 2 cut(s) 129, 818
BseDI CCNNGG 4 cut(s) 41, 51, 177, 442
BseGI GGATG 2 cut(s) 826, 906
BseJI GATNNNNATC 1 cut(s) 676
BseLI CCNNNNNNNGG 6 cut(s) 184, 228, 240, 270, 692, 749
BseMI GCAATG 2 cut(s) 522, 546
BseMII CTCAG 2 cut(s) 521, 622
BseNI ACTGG 2 cut(s) 107, 317
BseRI GAGGAG 2 cut(s) 331, 531
BseSI GKGCMC 1 cut(s) 235
BseX3I CGGCCG 1 cut(s) 283
BseXI GCAGC 2 cut(s) 743, 744
Bsh1236I CGCG 2 cut(s) 572, 769
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 6 cut(s) 93, 233, 260, 285, 569, 587
BshNI GGYRCC 1 cut(s) 410
BsiEI CGRYCG 1 cut(s) 286
BsiHKAI GWGCWC 2 cut(s) 192, 365
BsiHKCI CYCGRG 2 cut(s) 50, 442
BsiSI CCGG 9 cut(s) 138, 179, 241, 271, 443, 456, 624, 669, 743
BslFI GGGAC 2 cut(s) 189, 681
BslI CCNNNNNNNGG 6 cut(s) 184, 228, 240, 270, 692, 749
BsmAI GTCTC 4 cut(s) 434, 499, 510, 523
BsmBI CGTCTC 1 cut(s) 510
BsmFI GGGAC 2 cut(s) 189, 681
BsnI GGCC 6 cut(s) 93, 233, 260, 285, 569, 587
Bso31I GGTCTC 2 cut(s) 434, 523
BsoBI CYCGRG 2 cut(s) 50, 442
Bsp120I GGGCCC 1 cut(s) 231
Bsp1286I GDGCHC 4 cut(s) 50, 192, 235, 365
Bsp13I TCCGGA 2 cut(s) 455, 668
Bsp1720I GCTNAGC 1 cut(s) 608
Bsp19I CCATGG 1 cut(s) 41
BspANI GGCC 6 cut(s) 93, 233, 260, 285, 569, 587
BspCNI CTCAG 2 cut(s) 520, 621
BspEI TCCGGA 2 cut(s) 455, 668
BspFNI CGCG 2 cut(s) 572, 769
BspLI GGNNCC 9 cut(s) 39, 47, 233, 412, 460, 628, 667, 679, 697
BspT107I GGYRCC 1 cut(s) 410
BspTNI GGTCTC 2 cut(s) 434, 523
BsrDI GCAATG 2 cut(s) 522, 546
BsrFI RCCGGY 1 cut(s) 742
BsrI ACTGG 2 cut(s) 107, 317
BssAI RCCGGY 1 cut(s) 742
BssECI CCNNGG 4 cut(s) 41, 51, 177, 442
BssNI GRCGYC 1 cut(s) 369
BssT1I CCWWGG 1 cut(s) 41
Bst2UI CCWGG 2 cut(s) 129, 818
Bst6I CTCTTC 1 cut(s) 204
BstACI GRCGYC 1 cut(s) 369
BstAPI GCANNNNNTGC 2 cut(s) 147, 892
BstC8I GCNNGC 3 cut(s) 403, 482, 893
BstDEI CTNAG 2 cut(s) 507, 608
BstDSI CCRYGG 1 cut(s) 41
BstENI CCTNNNNNAGG 1 cut(s) 226
BstF5I GGATG 2 cut(s) 826, 906
BstFNI CGCG 2 cut(s) 572, 769
BstHHI GCGC 1 cut(s) 333
BstMAI GTCTC 4 cut(s) 434, 499, 510, 523
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 9 cut(s) 147, 266, 477, 486, 578, 763, 766, 883, 892
BstNI CCWGG 2 cut(s) 129, 818
BstNSI RCATGY 1 cut(s) 895
BstSCI CCNGG 8 cut(s) 127, 177, 239, 269, 441, 442, 622, 816
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 2 cut(s) 572, 769
BstV1I GCAGC 2 cut(s) 743, 744
BstV2I GAAGAC 2 cut(s) 63, 505
BstX2I RGATCY 5 cut(s) 84, 395, 458, 626, 677
BstXI CCANNNNNNTGG 2 cut(s) 102, 706
BstYI RGATCY 5 cut(s) 84, 395, 458, 626, 677
BstZI CGGCCG 1 cut(s) 283
BsuRI GGCC 6 cut(s) 93, 233, 260, 285, 569, 587
BtgI CCRYGG 1 cut(s) 41
BtgZI GCGATG 1 cut(s) 250
BtsCI GGATG 2 cut(s) 826, 906
BtsI GCAGTG 1 cut(s) 893
BtsIMutI CAGTG 2 cut(s) 310, 893
Cac8I GCNNGC 3 cut(s) 403, 482, 893
CaiI CAGNNNCTG 1 cut(s) 76
CfoI GCGC 1 cut(s) 333
Cfr10I RCCGGY 1 cut(s) 742
Cfr13I GGNCC 7 cut(s) 38, 92, 231, 232, 258, 666, 695
Cfr9I CCCGGG 1 cut(s) 442
CseI GACGC 2 cut(s) 394, 758
Csp6I GTAC 2 cut(s) 423, 536
CspCI CAANNNNNGTGG 1 cut(s) 35
CviAII CATG 6 cut(s) 42, 346, 374, 722, 862, 892
CviQI GTAC 2 cut(s) 423, 536
DdeI CTNAG 2 cut(s) 507, 608
EaeI YGGCCR 2 cut(s) 283, 585
EagI CGGCCG 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
EciI GGCGGA 2 cut(s) 388, 543
EclXI CGGCCG 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 41
Eco24I GRGCYC 2 cut(s) 50, 235
Eco31I GGTCTC 2 cut(s) 434, 523
Eco47I GGWCC 3 cut(s) 38, 666, 695
Eco52I CGGCCG 1 cut(s) 283
Eco57I CTGAAG 2 cut(s) 184, 921
Eco88I CYCGRG 2 cut(s) 50, 442
EcoNI CCTNNNNNAGG 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 231
EcoRII CCWGG 2 cut(s) 127, 816
EcoT14I CCWWGG 1 cut(s) 41
EcoT38I GRGCYC 2 cut(s) 50, 235
ErhI CCWWGG 1 cut(s) 41
Esp3I CGTCTC 1 cut(s) 510
FaeI CATG 6 cut(s) 45, 349, 377, 725, 865, 895
FaqI GGGAC 2 cut(s) 189, 681
FatI CATG 6 cut(s) 41, 345, 373, 721, 861, 891
FauI CCCGC 1 cut(s) 390
FauNDI CATATG 1 cut(s) 660
FbaI TGATCA 2 cut(s) 111, 837
Fnu4HI GCNGC 8 cut(s) 286, 557, 570, 732, 758, 761, 764, 767
FokI GGATG 2 cut(s) 833, 893
FriOI GRGCYC 2 cut(s) 50, 235
Fsp4HI GCNGC 8 cut(s) 286, 557, 570, 732, 758, 761, 764, 767
FspBI CTAG 1 cut(s) 477
GlaI GCGC 1 cut(s) 332
GluI GCNGC 8 cut(s) 286, 557, 570, 732, 758, 761, 764, 767
HaeIII GGCC 6 cut(s) 93, 233, 260, 285, 569, 587
HapII CCGG 9 cut(s) 138, 179, 241, 271, 443, 456, 624, 669, 743
HgaI GACGC 2 cut(s) 394, 758
HhaI GCGC 1 cut(s) 333
Hin1I GRCGYC 1 cut(s) 369
Hin1II CATG 6 cut(s) 45, 349, 377, 725, 865, 895
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HinfI GANTC 7 cut(s) 73, 124, 473, 632, 638, 655, 672
HpaII CCGG 9 cut(s) 138, 179, 241, 271, 443, 456, 624, 669, 743
HphI GGTGA 2 cut(s) 508, 862
Hpy188III TCNNGA 6 cut(s) 82, 206, 456, 669, 841, 934
Hpy99I CGWCG 2 cut(s) 371, 410
HpyAV CCTTC 4 cut(s) 10, 208, 838, 874
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 5 cut(s) 165, 484, 829, 891, 895
HpyF10VI GCNNNNNNNGC 9 cut(s) 147, 266, 477, 486, 578, 763, 766, 883, 892
HpyF3I CTNAG 2 cut(s) 507, 608
HpySE526I ACGT 1 cut(s) 369
Hsp92I GRCGYC 1 cut(s) 369
Hsp92II CATG 6 cut(s) 45, 349, 377, 725, 865, 895
HspAI GCGC 1 cut(s) 331
Kpn2I TCCGGA 2 cut(s) 455, 668
Ksp22I TGATCA 2 cut(s) 111, 837
LmnI GCTCC 6 cut(s) 45, 187, 344, 368, 556, 739
Lsp1109I GCAGC 2 cut(s) 743, 744
LweI GCATC 1 cut(s) 816
MaeI CTAG 1 cut(s) 477
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 2 cut(s) 66, 644
MboII GAAGA 4 cut(s) 68, 221, 365, 505
MflI RGATCY 5 cut(s) 84, 395, 458, 626, 677
MhlI GDGCHC 4 cut(s) 50, 192, 235, 365
MluCI AATT 1 cut(s) 778
MlyI GAGTC 2 cut(s) 641, 647
MmeI TCCRAC 2 cut(s) 390, 615
MroI TCCGGA 2 cut(s) 455, 668
MseI TTAA 2 cut(s) 224, 438
MslI CAYNNNNRTG 2 cut(s) 489, 704
MspA1I CMGCKG 1 cut(s) 581
MspI CCGG 9 cut(s) 138, 179, 241, 271, 443, 456, 624, 669, 743
MspR9I CCNGG 8 cut(s) 129, 179, 241, 271, 443, 444, 624, 818
MvaI CCWGG 2 cut(s) 129, 818
MvnI CGCG 2 cut(s) 572, 769
MwoI GCNNNNNNNGC 9 cut(s) 147, 266, 477, 486, 578, 763, 766, 883, 892
NciI CCSGG 6 cut(s) 179, 241, 271, 443, 444, 624
NcoI CCATGG 1 cut(s) 41
NdeI CATATG 1 cut(s) 660
NlaIII CATG 6 cut(s) 45, 349, 377, 725, 865, 895
NlaIV GGNNCC 9 cut(s) 39, 47, 233, 412, 460, 628, 667, 679, 697
NmuCI GTSAC 1 cut(s) 644
NspI RCATGY 1 cut(s) 895
OliI CACNNNNGTG 1 cut(s) 489
PaeI GCATGC 1 cut(s) 895
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PfeI GAWTC 5 cut(s) 73, 124, 473, 655, 672
PfoI TCCNGGA 2 cut(s) 622, 816
PkrI GCNGC 8 cut(s) 287, 558, 571, 733, 759, 762, 765, 768
PleI GAGTC 2 cut(s) 640, 646
PpsI GAGTC 2 cut(s) 640, 646
Psp6I CCWGG 2 cut(s) 127, 816
PspGI CCWGG 2 cut(s) 127, 816
PspN4I GGNNCC 9 cut(s) 39, 47, 233, 412, 460, 628, 667, 679, 697
PspOMI GGGCCC 1 cut(s) 231
PspPI GGNCC 7 cut(s) 38, 92, 231, 232, 258, 666, 695
PstNI CAGNNNCTG 1 cut(s) 76
PsuI RGATCY 5 cut(s) 84, 395, 458, 626, 677
PvuII CAGCTG 1 cut(s) 581
RsaI GTAC 2 cut(s) 424, 537
RsaNI GTAC 2 cut(s) 423, 536
RseI CAYNNNNRTG 2 cut(s) 489, 704
SaqAI TTAA 2 cut(s) 224, 438
SatI GCNGC 8 cut(s) 286, 557, 570, 732, 758, 761, 764, 767
Sau96I GGNCC 7 cut(s) 38, 92, 231, 232, 258, 666, 695
SchI GAGTC 2 cut(s) 641, 647
ScrFI CCNGG 8 cut(s) 129, 179, 241, 271, 443, 444, 624, 818
SduI GDGCHC 4 cut(s) 50, 192, 235, 365
SfaNI GCATC 1 cut(s) 816
SgrAI CRCCGGYG 1 cut(s) 742
SinI GGWCC 3 cut(s) 38, 666, 695
SmaI CCCGGG 1 cut(s) 444
SmiMI CAYNNNNRTG 2 cut(s) 489, 704
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
SphI GCATGC 1 cut(s) 895
Sse9I AATT 1 cut(s) 778
SspMI CTAG 1 cut(s) 477
StyD4I CCNGG 8 cut(s) 127, 177, 239, 269, 441, 442, 622, 816
StyI CCWWGG 1 cut(s) 41
TaiI ACGT 1 cut(s) 372
TaqI TCGA 4 cut(s) 122, 133, 653, 948
TasI AATT 1 cut(s) 778
TauI GCSGC 6 cut(s) 288, 559, 572, 763, 766, 769
TfiI GAWTC 5 cut(s) 73, 124, 473, 655, 672
Tru1I TTAA 2 cut(s) 224, 438
Tru9I TTAA 2 cut(s) 224, 438
TscAI CASTG 2 cut(s) 317, 893
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 2 cut(s) 731, 757
Tsp45I GTSAC 1 cut(s) 644
TspMI CCCGGG 1 cut(s) 442
TspRI CASTG 2 cut(s) 317, 893
VpaK11BI GGWCC 3 cut(s) 38, 666, 695
XagI CCTNNNNNAGG 1 cut(s) 226
XceI RCATGY 1 cut(s) 895
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XmaI CCCGGG 1 cut(s) 442
XspI CTAG 1 cut(s) 477
ZraI GACGTC 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.