Rroxscaffold_7G00210080
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001796
Physical Location & Seq
Forward (+)
60341046 .. 60341903
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00210080.1

Sequence Viewer

Length: 858 bp
ATGGATAGCGAATCGGTTCAGCGGCAACAGAGTGAGTTGGATCGGGTAAAGGGGCCGTGGAGCCCCGAAGAGGACGACTTGCTGAGGAAGCTGGTGCAGCGGCACGGCGCTCGGAACTGGACGCTGATAAGCAAGTCGATTCCCGGCCGGTCCGGCAAGTCGTGCCGGCTCCGGTGGTGCAATCAGCTCTCACCGGAGGTGGAGCACCGGGCGTTCACGGCCGAGGAGGACGAGATAATCGCGGCGGCGCATTCGAAGTACGGCAACAAGTGGGCCACCATAGCCAGGCTCCTCAACGGCCGTACGGACAATGCGATCAAGAACCACTGGAACTCCACTCTGAAGCGGAAGTACTCGTCCATGGCTGAAGACGGCGTCTTCGGCGGCGGAGGCGGTTCGATCGAGGAGCATCATCACCACCACCTCAGGCCGGAGAAGAAATCGGCGACGGTTTCGGTTTCGGGCCGCGGATACAGTCCGACGAGCCCGTCTGGATCAGACGTCAGCGACTCCGGCGTCGTGCCTGCAGTGTCGTCGGCGCAGGTGTTCAGGCCGGTGGCGAGAGCAGTGTTGAGGACGGAGTCGCCGCCGAGCCAGAACGACATGATCCACAATGAACCGGAGCCGTCGACGCTGCTGACTCTGTCGTTACCTGGAGGCTACTCGACCGAGTTAGCGACTCGCCGAGAAGAAAGAACGACGTCGTTGCAGCAGCAGCAGGAGGCTGAGAATGAGAACAGAACGATGTCGTTTGGGCCGGAGTTCATGTCTTTTATGCAGGAGATGATTAGGAAGGAGGTTAGGAACTACATGGATGACATGAACGGTCAGCACTTTGGTATACCCAAGCTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

285

Amino Acids

31.91

Weight (kDa)

6.85

Isoelectric Point (pI)

64.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 17 - 63 1.5e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 20 - 77 5.1e-17 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 71 - 113 2.8e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 119 8.8e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 532
AasI GACNNNNNNGTC 2 cut(s) 487, 515
AatII GACGTC 2 cut(s) 504, 704
Acc36I ACCTGC 1 cut(s) 532
AccI GTMKAC 2 cut(s) 629, 841
AccII CGCG 2 cut(s) 242, 468
AclWI GGATC 3 cut(s) 48, 502, 601
AcoI YGGCCR 3 cut(s) 145, 219, 298
AcuI CTGAAG 2 cut(s) 362, 387
AcyI GRCGYC 4 cut(s) 375, 501, 516, 701
AfaI GTAC 3 cut(s) 260, 304, 353
AfiI CCNNNNNNNGG 3 cut(s) 70, 285, 430
AjnI CCWGG 2 cut(s) 284, 652
AluBI AGCT 3 cut(s) 91, 187, 850
AluI AGCT 3 cut(s) 91, 187, 850
Alw21I GWGCWC 1 cut(s) 207
AlwI GGATC 3 cut(s) 48, 502, 601
AoxI GGCC 9 cut(s) 53, 145, 219, 273, 298, 428, 463, 551, 755
ApeKI GCWGC 5 cut(s) 97, 634, 709, 712, 715
ArsI GACNNNNNNTTYG 2 cut(s) 362, 394
Asp700I GAANNNNTTC 1 cut(s) 15
AspLEI GCGC 3 cut(s) 110, 250, 541
AspS9I GGNCC 5 cut(s) 53, 150, 273, 463, 755
AsuC2I CCSGG 2 cut(s) 144, 209
AsuHPI GGTGA 2 cut(s) 183, 407
AsuII TTCGAA 1 cut(s) 254
AvaII GGWCC 1 cut(s) 150
AxyI CCTNAGG 1 cut(s) 425
BanII GRGCYC 2 cut(s) 65, 488
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
BbsI GAAGAC 2 cut(s) 370, 375
Bbv12I GWGCWC 1 cut(s) 207
BbvCI CCTCAGC 1 cut(s) 83
BbvI GCAGC 5 cut(s) 109, 621, 721, 724, 727
BceAI ACGGC 8 cut(s) 40, 121, 234, 277, 285, 313, 388, 610
BcgI CGANNNNNNTGC 6 cut(s) 92, 126, 516, 550, 688, 722
BciT130I CCWGG 2 cut(s) 286, 654
BciVI GTATCC 1 cut(s) 464
BcnI CCSGG 2 cut(s) 144, 209
BfmI CTRYAG 1 cut(s) 525
BfoI RGCGCY 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 532
BfuI GTATCC 1 cut(s) 464
BglI GCCNNNNNGGC 1 cut(s) 153
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 4 cut(s) 144, 209, 286, 654
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 5 cut(s) 53, 150, 273, 463, 755
BmiI GGNNCC 5 cut(s) 54, 62, 170, 290, 624
BmrFI CCNGG 4 cut(s) 144, 209, 286, 654
BmsI GCATC 1 cut(s) 418
BpiI GAAGAC 2 cut(s) 370, 375
BpmI CTGGAG 1 cut(s) 675
Bpu10I CCTNAGC 1 cut(s) 83
Bpu14I TTCGAA 1 cut(s) 254
BpuMI CCSGG 2 cut(s) 144, 209
BsaHI GRCGYC 4 cut(s) 375, 501, 516, 701
BsaJI CCNNGG 4 cut(s) 56, 222, 360, 466
BsaWI WCCGGW 3 cut(s) 171, 193, 619
BsaXI ACNNNNNCTCC 4 cut(s) 317, 347, 752, 782
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 285, 430
Bse118I RCCGGY 3 cut(s) 147, 165, 553
Bse1I ACTGG 2 cut(s) 122, 332
Bse21I CCTNAGG 1 cut(s) 425
BseBI CCWGG 2 cut(s) 286, 654
BseDI CCNNGG 4 cut(s) 56, 222, 360, 466
BseGI GGATG 1 cut(s) 820
BseLI CCNNNNNNNGG 3 cut(s) 70, 285, 430
BseMII CTCAG 3 cut(s) 74, 439, 717
BseNI ACTGG 2 cut(s) 122, 332
BseRI GAGGAG 3 cut(s) 239, 281, 419
BseX3I CGGCCG 3 cut(s) 145, 219, 298
BseXI GCAGC 5 cut(s) 109, 621, 721, 724, 727
BsgI GTGCAG 1 cut(s) 116
Bsh1236I CGCG 2 cut(s) 242, 468
Bsh1285I CGRYCG 5 cut(s) 148, 222, 301, 402, 669
BshFI GGCC 9 cut(s) 55, 147, 221, 275, 300, 430, 465, 553, 757
BsiEI CGRYCG 5 cut(s) 148, 222, 301, 402, 669
BsiHKAI GWGCWC 1 cut(s) 207
BsiWI CGTACG 1 cut(s) 302
BslI CCNNNNNNNGG 3 cut(s) 70, 285, 430
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 9 cut(s) 55, 147, 221, 275, 300, 430, 465, 553, 757
Bsp119I TTCGAA 1 cut(s) 254
Bsp1286I GDGCHC 3 cut(s) 65, 207, 488
Bsp143I GATC 5 cut(s) 40, 315, 399, 494, 606
Bsp19I CCATGG 1 cut(s) 360
BspANI GGCC 9 cut(s) 55, 147, 221, 275, 300, 430, 465, 553, 757
BspCNI CTCAG 3 cut(s) 75, 438, 718
BspFNI CGCG 2 cut(s) 242, 468
BspLI GGNNCC 5 cut(s) 54, 62, 170, 290, 624
BspMAI CTGCAG 1 cut(s) 529
BspMI ACCTGC 1 cut(s) 532
BspPI GGATC 3 cut(s) 48, 502, 601
BspT104I TTCGAA 1 cut(s) 254
BsrFI RCCGGY 3 cut(s) 147, 165, 553
BsrI ACTGG 2 cut(s) 122, 332
BssAI RCCGGY 3 cut(s) 147, 165, 553
BssECI CCNNGG 4 cut(s) 56, 222, 360, 466
BssMI GATC 5 cut(s) 40, 315, 399, 494, 606
BssNAI GTATAC 1 cut(s) 842
BssNI GRCGYC 4 cut(s) 375, 501, 516, 701
BssT1I CCWWGG 1 cut(s) 360
Bst1107I GTATAC 1 cut(s) 842
Bst2UI CCWGG 2 cut(s) 286, 654
Bst4CI ACNGT 3 cut(s) 451, 476, 827
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 4 cut(s) 375, 501, 516, 701
BstAPI GCANNNNNTGC 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 254
BstC8I GCNNGC 2 cut(s) 167, 525
BstDEI CTNAG 3 cut(s) 83, 425, 726
BstDSI CCRYGG 3 cut(s) 56, 360, 466
BstF5I GGATG 1 cut(s) 820
BstFNI CGCG 2 cut(s) 242, 468
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 3 cut(s) 110, 250, 541
BstKTI GATC 5 cut(s) 43, 318, 402, 497, 609
BstMBI GATC 5 cut(s) 40, 315, 399, 494, 606
BstMCI CGRYCG 5 cut(s) 148, 222, 301, 402, 669
BstNI CCWGG 2 cut(s) 286, 654
BstSCI CCNGG 4 cut(s) 142, 207, 284, 652
BstSFI CTRYAG 1 cut(s) 525
BstUI CGCG 2 cut(s) 242, 468
BstV1I GCAGC 5 cut(s) 109, 621, 721, 724, 727
BstV2I GAAGAC 2 cut(s) 370, 375
BstZ17I GTATAC 1 cut(s) 842
BstZI CGGCCG 3 cut(s) 145, 219, 298
Bsu36I CCTNAGG 1 cut(s) 425
BsuI GTATCC 1 cut(s) 464
BsuRI GGCC 9 cut(s) 55, 147, 221, 275, 300, 430, 465, 553, 757
BtgI CCRYGG 3 cut(s) 56, 360, 466
BtsCI GGATG 1 cut(s) 820
BtsI GCAGTG 2 cut(s) 534, 573
BtsIMutI CAGTG 3 cut(s) 325, 534, 573
BveI ACCTGC 1 cut(s) 532
Cac8I GCNNGC 2 cut(s) 167, 525
CfoI GCGC 3 cut(s) 110, 250, 541
Cfr10I RCCGGY 3 cut(s) 147, 165, 553
Cfr13I GGNCC 5 cut(s) 53, 150, 273, 463, 755
Cfr42I CCGCGG 1 cut(s) 469
CpoI CGGWCCG 1 cut(s) 150
CseI GACGC 4 cut(s) 130, 364, 505, 640
Csp6I GTAC 3 cut(s) 259, 303, 352
CspI CGGWCCG 1 cut(s) 150
CviAII CATG 5 cut(s) 361, 604, 766, 811, 820
CviQI GTAC 3 cut(s) 259, 303, 352
DdeI CTNAG 3 cut(s) 83, 425, 726
DpnI GATC 5 cut(s) 42, 317, 401, 496, 608
DpnII GATC 5 cut(s) 40, 315, 399, 494, 606
DrdI GACNNNNNNGTC 2 cut(s) 487, 515
DseDI GACNNNNNNGTC 2 cut(s) 487, 515
EaeI YGGCCR 3 cut(s) 145, 219, 298
EagI CGGCCG 3 cut(s) 145, 219, 298
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
EciI GGCGGA 1 cut(s) 402
EclXI CGGCCG 3 cut(s) 145, 219, 298
Eco130I CCWWGG 1 cut(s) 360
Eco24I GRGCYC 2 cut(s) 65, 488
Eco47I GGWCC 1 cut(s) 150
Eco52I CGGCCG 3 cut(s) 145, 219, 298
Eco57I CTGAAG 2 cut(s) 362, 387
Eco81I CCTNAGG 1 cut(s) 425
EcoRII CCWGG 2 cut(s) 284, 652
EcoT14I CCWWGG 1 cut(s) 360
EcoT38I GRGCYC 2 cut(s) 65, 488
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 5 cut(s) 364, 607, 769, 814, 823
FaiI YATR 9 cut(s) 281, 362, 605, 767, 776, 812, 821, 842, 856
FatI CATG 5 cut(s) 360, 603, 765, 810, 819
FblI GTMKAC 2 cut(s) 629, 841
FokI GGATG 1 cut(s) 827
FriOI GRGCYC 2 cut(s) 65, 488
GlaI GCGC 3 cut(s) 109, 249, 540
GsuI CTGGAG 1 cut(s) 675
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 9 cut(s) 55, 147, 221, 275, 300, 430, 465, 553, 757
HgaI GACGC 4 cut(s) 130, 364, 505, 640
HhaI GCGC 3 cut(s) 110, 250, 541
Hin1I GRCGYC 4 cut(s) 375, 501, 516, 701
Hin1II CATG 5 cut(s) 364, 607, 769, 814, 823
Hin6I GCGC 3 cut(s) 108, 248, 539
HinP1I GCGC 3 cut(s) 108, 248, 539
HincII GTYRAC 1 cut(s) 630
HindII GTYRAC 1 cut(s) 630
HindIII AAGCTT 1 cut(s) 848
HinfI GANTC 6 cut(s) 11, 139, 509, 581, 640, 679
HphI GGTGA 2 cut(s) 183, 407
Hpy166II GTNNAC 3 cut(s) 216, 630, 842
Hpy188I TCNGA 4 cut(s) 114, 342, 480, 499
Hpy188III TCNNGA 2 cut(s) 319, 492
Hpy8I GTNNAC 3 cut(s) 216, 630, 842
Hpy99I CGWCG 8 cut(s) 451, 484, 521, 538, 631, 634, 703, 706
HpyAV CCTTC 1 cut(s) 787
HpyCH4III ACNGT 3 cut(s) 451, 476, 827
HpyCH4IV ACGT 2 cut(s) 501, 701
HpyCH4V TGCA 5 cut(s) 97, 180, 527, 709, 778
HpyF3I CTNAG 3 cut(s) 83, 425, 726
HpySE526I ACGT 2 cut(s) 501, 701
Hsp92I GRCGYC 4 cut(s) 375, 501, 516, 701
Hsp92II CATG 5 cut(s) 364, 607, 769, 814, 823
HspAI GCGC 3 cut(s) 108, 248, 539
KroI GCCGGC 1 cut(s) 165
KroNI GCCGGC 1 cut(s) 167
KspI CCGCGG 1 cut(s) 469
Kzo9I GATC 5 cut(s) 40, 315, 399, 494, 606
LmnI GCTCC 6 cut(s) 60, 174, 202, 294, 406, 622
Lsp1109I GCAGC 5 cut(s) 109, 621, 721, 724, 727
LweI GCATC 1 cut(s) 418
MaeII ACGT 2 cut(s) 501, 701
MaeIII GTNAC 1 cut(s) 648
MalI GATC 5 cut(s) 42, 317, 401, 496, 608
MboI GATC 5 cut(s) 40, 315, 399, 494, 606
MboII GAAGA 5 cut(s) 80, 370, 380, 448, 701
MhlI GDGCHC 3 cut(s) 65, 207, 488
MlyI GAGTC 4 cut(s) 503, 590, 634, 673
MmeI TCCRAC 2 cut(s) 18, 503
MroNI GCCGGC 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 15
MspA1I CMGCKG 3 cut(s) 22, 100, 468
MspR9I CCNGG 4 cut(s) 144, 209, 286, 654
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 2 cut(s) 286, 654
MvnI CGCG 2 cut(s) 242, 468
NaeI GCCGGC 1 cut(s) 167
NciI CCSGG 2 cut(s) 144, 209
NcoI CCATGG 1 cut(s) 360
NdeII GATC 5 cut(s) 40, 315, 399, 494, 606
NgoMIV GCCGGC 1 cut(s) 165
NlaIII CATG 5 cut(s) 364, 607, 769, 814, 823
NlaIV GGNNCC 5 cut(s) 54, 62, 170, 290, 624
NmeAIII GCCGAG 3 cut(s) 247, 615, 710
NspV TTCGAA 1 cut(s) 254
PaqCI CACCTGC 1 cut(s) 532
PcsI WCGNNNNNNNCGW 1 cut(s) 311
PctI GAATGC 1 cut(s) 250
PdiI GCCGGC 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 11, 139
Pfl23II CGTACG 1 cut(s) 302
PflFI GACNNNGTC 3 cut(s) 374, 580, 643
Ple19I CGATCG 1 cut(s) 402
PleI GAGTC 4 cut(s) 503, 589, 634, 673
PpsI GAGTC 4 cut(s) 503, 589, 634, 673
Psp6I CCWGG 2 cut(s) 284, 652
PspGI CCWGG 2 cut(s) 284, 652
PspLI CGTACG 1 cut(s) 302
PspN4I GGNNCC 5 cut(s) 54, 62, 170, 290, 624
PspPI GGNCC 5 cut(s) 53, 150, 273, 463, 755
PstI CTGCAG 1 cut(s) 529
PsyI GACNNNGTC 3 cut(s) 374, 580, 643
PvuI CGATCG 1 cut(s) 402
RsaI GTAC 3 cut(s) 260, 304, 353
RsaNI GTAC 3 cut(s) 259, 303, 352
Rsr2I CGGWCCG 1 cut(s) 150
RsrII CGGWCCG 1 cut(s) 150
SacII CCGCGG 1 cut(s) 469
SalI GTCGAC 1 cut(s) 628
Sau3AI GATC 5 cut(s) 40, 315, 399, 494, 606
Sau96I GGNCC 5 cut(s) 53, 150, 273, 463, 755
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 4 cut(s) 503, 590, 634, 673
ScrFI CCNGG 4 cut(s) 144, 209, 286, 654
SduI GDGCHC 3 cut(s) 65, 207, 488
SfaNI GCATC 1 cut(s) 418
SfcI CTRYAG 1 cut(s) 525
Sfr303I CCGCGG 1 cut(s) 469
SfuI TTCGAA 1 cut(s) 254
SgrBI CCGCGG 1 cut(s) 469
SgrDI CGTCGACG 1 cut(s) 628
SinI GGWCC 1 cut(s) 150
StyD4I CCNGG 4 cut(s) 142, 207, 284, 652
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 3 cut(s) 451, 476, 827
TaiI ACGT 2 cut(s) 504, 704
TaqI TCGA 6 cut(s) 137, 254, 398, 402, 629, 665
TaqII GACCGA 1 cut(s) 683
TatI WGTACW 1 cut(s) 351
TauI GCSGC 7 cut(s) 25, 103, 245, 248, 387, 468, 589
TfiI GAWTC 2 cut(s) 11, 139
TscAI CASTG 3 cut(s) 332, 534, 573
TseI GCWGC 5 cut(s) 97, 634, 709, 712, 715
TspDTI ATGAA 4 cut(s) 630, 754, 836, 843
TspGWI ACGGA 2 cut(s) 320, 593
TspRI CASTG 3 cut(s) 332, 534, 573
Tth111I GACNNNGTC 3 cut(s) 374, 580, 643
VpaK11BI GGWCC 1 cut(s) 150
XmiI GTMKAC 2 cut(s) 629, 841
XmnI GAANNNNTTC 1 cut(s) 15
ZraI GACGTC 2 cut(s) 502, 702
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.