AT5G67300
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001796
Physical Location & Seq
Forward (+)
26854022 .. 26856006
1985 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G67300.1

Sequence Viewer

Length: 918 bp
ATGGCTGATAGGATCAAAGGTCCATGGAGTCCTGAAGAAGACGAGCAGCTTCGTAGGCTTGTTGTTAAATACGGTCCAAGAAACTGGACAGTGATTAGCAAATCTATTCCCGGTAGATCGGGGAAATCGTGTCGTTTACGGTGGTGCAACCAGCTTTCGCCGCAAGTTGAGCATCGGCCGTTTTCGGCTGAGGAAGACGAGACGATCGCACGTGCTCACGCTCAGTTCGGTAATAAATGGGCGACGATTGCTCGTCTTCTCAACGGTCGTACGGACAACGCCGTGAAGAATCACTGGAACTCGACGCTCAAGAGGAAATGCGGCGGTTACGACCATCGGGGTTACGATGGTTCGGAGGATCATCGGCCGGTTAAGAGATCGGTGAGTGCGGGATCTCCACCTGTTGTTACTGGGCTTTACATGAGCCCAGGAAGCCCAACTGGATCTGATGTCAGTGATTCAAGTACTATCCCGATATTACCTTCCGTTGAGCTTTTCAAGCCTGTGCCTAGACCTGGTGCTGTTGTGCTACCGCTTCCTATCGAAACGTCGTCTTCTTCCGATGATCCACCGACTTCGTTAAGCTTGTCACTTCCTGGTGCCGACGTAAGCGAGGAGTCAAACCGTAGCCACGAGTCAACGAATATCAACAACACCACTTCGAGCCGCCACAACCACAACAATACGGTGTCGTTTATGCCGTTTAGTGGTGGGTTTAGAGGTGCGATTGAGGAAATGGGGAAGTCTTTTCCCGGTAACGGAGGCGAGTTTATGGCGGTGGTGCAAGAGATGATTAAGGCGGAAGTGAGGAGTTACATGACGGAGATGCAACGGAACAATGGTGGCGGATTCGTCGGAGGATTCATTGATAATGGCATGATTCCGATGAGTCAAATTGGAGTTGGGAGAATCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022622 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0047484 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048527 GO:0048528 GO:0048583 GO:0048584 GO:0048585 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0090696 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901000 GO:1901001 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

305

Amino Acids

33.27

Weight (kDa)

7.79

Isoelectric Point (pI)

66.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 6 - 52 1.4e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 9 - 68 3.1e-17 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 59 - 102 1.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 61 - 107 2.4e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 599
AciI CCGC 9 cut(s) 161, 321, 324, 389, 533, 667, 776, 800, 846
AclWI GGATC 5 cut(s) 20, 366, 400, 451, 560
AcoI YGGCCR 2 cut(s) 176, 365
AcuI CTGAAG 1 cut(s) 54
AcvI CACGTG 1 cut(s) 212
AfaI GTAC 2 cut(s) 271, 466
AfiI CCNNNNNNNGG 3 cut(s) 515, 707, 758
AgsI TTSAA 2 cut(s) 462, 499
AjnI CCWGG 3 cut(s) 427, 514, 595
AluBI AGCT 4 cut(s) 49, 154, 493, 585
AluI AGCT 4 cut(s) 49, 154, 493, 585
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 5 cut(s) 20, 366, 400, 451, 560
AoxI GGCC 2 cut(s) 176, 365
ApeKI GCWGC 1 cut(s) 46
AspS9I GGNCC 2 cut(s) 20, 74
AsuC2I CCSGG 2 cut(s) 111, 753
AsuHPI GGTGA 1 cut(s) 394
AvaII GGWCC 2 cut(s) 20, 74
BanI GGYRCC 1 cut(s) 599
BanII GRGCYC 1 cut(s) 428
BauI CACGAG 1 cut(s) 632
BbrPI CACGTG 1 cut(s) 212
BbsI GAAGAC 4 cut(s) 45, 201, 248, 546
Bbv12I GWGCWC 1 cut(s) 217
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 58
BccI CCATC 2 cut(s) 341, 342
BceAI ACGGC 3 cut(s) 163, 266, 685
BciT130I CCWGG 3 cut(s) 429, 516, 597
BcnI CCSGG 2 cut(s) 111, 753
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 1 cut(s) 510
BisI GCNGC 4 cut(s) 47, 161, 322, 667
BlsI GCNGC 4 cut(s) 48, 162, 323, 668
BmcAI AGTACT 1 cut(s) 466
Bme1390I CCNGG 5 cut(s) 111, 429, 516, 597, 753
Bme18I GGWCC 2 cut(s) 20, 74
BmgT120I GGNCC 2 cut(s) 20, 74
BmiI GGNNCC 1 cut(s) 601
BmrFI CCNGG 5 cut(s) 111, 429, 516, 597, 753
BmrI ACTGGG 1 cut(s) 420
BmsI GCATC 2 cut(s) 181, 816
BmuI ACTGGG 1 cut(s) 420
BpiI GAAGAC 4 cut(s) 45, 201, 248, 546
Bpu10I CCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 2 cut(s) 111, 753
BsaAI YACGTR 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 23, 427
Bsc4I CCNNNNNNNGG 3 cut(s) 515, 707, 758
Bse118I RCCGGY 1 cut(s) 367
Bse1I ACTGG 4 cut(s) 89, 299, 415, 445
BseBI CCWGG 3 cut(s) 429, 516, 597
BseDI CCNNGG 2 cut(s) 23, 427
BseLI CCNNNNNNNGG 3 cut(s) 515, 707, 758
BseMII CTCAG 2 cut(s) 180, 236
BseNI ACTGG 4 cut(s) 89, 299, 415, 445
BseRI GAGGAG 2 cut(s) 629, 823
BseX3I CGGCCG 2 cut(s) 176, 365
BseXI GCAGC 1 cut(s) 58
Bsh1285I CGRYCG 4 cut(s) 179, 207, 268, 368
BshFI GGCC 2 cut(s) 178, 367
BshNI GGYRCC 1 cut(s) 599
BsiEI CGRYCG 4 cut(s) 179, 207, 268, 368
BsiHKAI GWGCWC 1 cut(s) 217
BsiSI CCGG 3 cut(s) 111, 368, 753
BsiWI CGTACG 1 cut(s) 269
BslI CCNNNNNNNGG 3 cut(s) 515, 707, 758
BsmAI GTCTC 1 cut(s) 194
BsmBI CGTCTC 1 cut(s) 194
BsnI GGCC 2 cut(s) 178, 367
Bsp1286I GDGCHC 2 cut(s) 217, 428
Bsp143I GATC 8 cut(s) 12, 116, 204, 358, 377, 392, 443, 565
Bsp19I CCATGG 1 cut(s) 23
BspACI CCGC 9 cut(s) 161, 321, 324, 389, 533, 667, 776, 800, 846
BspANI GGCC 2 cut(s) 178, 367
BspCNI CTCAG 2 cut(s) 181, 235
BspLI GGNNCC 1 cut(s) 601
BspPI GGATC 5 cut(s) 20, 366, 400, 451, 560
BspT107I GGYRCC 1 cut(s) 599
BsrFI RCCGGY 1 cut(s) 367
BsrI ACTGG 4 cut(s) 89, 299, 415, 445
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 2 cut(s) 23, 427
BssMI GATC 8 cut(s) 12, 116, 204, 358, 377, 392, 443, 565
BssSI CACGAG 1 cut(s) 632
BssT1I CCWWGG 1 cut(s) 23
Bst2BI CACGAG 1 cut(s) 632
Bst2UI CCWGG 3 cut(s) 429, 516, 597
Bst4CI ACNGT 6 cut(s) 74, 91, 141, 266, 626, 688
BstBAI YACGTR 1 cut(s) 212
BstDEI CTNAG 2 cut(s) 189, 222
BstDSI CCRYGG 1 cut(s) 23
BstKTI GATC 8 cut(s) 15, 119, 207, 361, 380, 395, 446, 568
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 8 cut(s) 12, 116, 204, 358, 377, 392, 443, 565
BstMCI CGRYCG 4 cut(s) 179, 207, 268, 368
BstMWI GCNNNNNNNGC 6 cut(s) 55, 160, 169, 248, 432, 499
BstNI CCWGG 3 cut(s) 429, 516, 597
BstSCI CCNGG 5 cut(s) 109, 427, 514, 595, 751
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 4 cut(s) 45, 201, 248, 546
BstX2I RGATCY 2 cut(s) 392, 443
BstXI CCANNNNNNTGG 1 cut(s) 84
BstYI RGATCY 2 cut(s) 392, 443
BstZI CGGCCG 2 cut(s) 176, 365
BsuRI GGCC 2 cut(s) 178, 367
BtgI CCRYGG 1 cut(s) 23
BtsIMutI CAGTG 3 cut(s) 96, 292, 460
Cfr10I RCCGGY 1 cut(s) 367
Cfr13I GGNCC 2 cut(s) 20, 74
CseI GACGC 1 cut(s) 313
CsiI ACCWGGT 1 cut(s) 514
Csp6I GTAC 2 cut(s) 270, 465
CviAII CATG 4 cut(s) 24, 421, 817, 877
CviQI GTAC 2 cut(s) 270, 465
DdeI CTNAG 2 cut(s) 189, 222
DpnI GATC 8 cut(s) 14, 118, 206, 360, 379, 394, 445, 567
DpnII GATC 8 cut(s) 12, 116, 204, 358, 377, 392, 443, 565
EaeI YGGCCR 2 cut(s) 176, 365
EagI CGGCCG 2 cut(s) 176, 365
EciI GGCGGA 2 cut(s) 815, 861
EclXI CGGCCG 2 cut(s) 176, 365
Eco130I CCWWGG 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 428
Eco47I GGWCC 2 cut(s) 20, 74
Eco52I CGGCCG 2 cut(s) 176, 365
Eco57I CTGAAG 1 cut(s) 54
Eco72I CACGTG 1 cut(s) 212
EcoRII CCWGG 3 cut(s) 427, 514, 595
EcoT14I CCWWGG 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 428
ErhI CCWWGG 1 cut(s) 23
Esp3I CGTCTC 1 cut(s) 194
FaeI CATG 4 cut(s) 27, 424, 820, 880
FaiI YATR 6 cut(s) 25, 422, 698, 773, 818, 878
FatI CATG 4 cut(s) 23, 420, 816, 876
FauI CCCGC 1 cut(s) 382
Fnu4HI GCNGC 4 cut(s) 47, 161, 322, 667
FriOI GRGCYC 1 cut(s) 428
Fsp4HI GCNGC 4 cut(s) 47, 161, 322, 667
FspBI CTAG 1 cut(s) 510
GluI GCNGC 4 cut(s) 47, 161, 322, 667
HaeIII GGCC 2 cut(s) 178, 367
HapII CCGG 3 cut(s) 111, 368, 753
HgaI GACGC 1 cut(s) 313
Hin1II CATG 4 cut(s) 27, 424, 820, 880
HincII GTYRAC 1 cut(s) 639
HindII GTYRAC 1 cut(s) 639
HindIII AAGCTT 1 cut(s) 583
HpaII CCGG 3 cut(s) 111, 368, 753
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 2 cut(s) 137, 639
Hpy188I TCNGA 5 cut(s) 355, 448, 562, 857, 885
Hpy188III TCNNGA 3 cut(s) 32, 310, 472
Hpy8I GTNNAC 2 cut(s) 137, 639
Hpy99I CGWCG 5 cut(s) 247, 307, 553, 608, 857
HpyAV CCTTC 1 cut(s) 492
HpyCH4III ACNGT 6 cut(s) 74, 91, 141, 266, 626, 688
HpyCH4IV ACGT 3 cut(s) 211, 548, 606
HpyCH4V TGCA 3 cut(s) 147, 784, 829
HpyF10VI GCNNNNNNNGC 6 cut(s) 55, 160, 169, 248, 432, 499
HpyF3I CTNAG 2 cut(s) 189, 222
HpySE526I ACGT 3 cut(s) 211, 548, 606
Hsp92II CATG 4 cut(s) 27, 424, 820, 880
Kzo9I GATC 8 cut(s) 12, 116, 204, 358, 377, 392, 443, 565
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 2 cut(s) 181, 816
MabI ACCWGGT 1 cut(s) 514
MaeI CTAG 1 cut(s) 510
MaeII ACGT 3 cut(s) 211, 548, 606
MaeIII GTNAC 6 cut(s) 326, 341, 406, 588, 755, 812
MalI GATC 8 cut(s) 14, 118, 206, 360, 379, 394, 445, 567
MboI GATC 8 cut(s) 12, 116, 204, 358, 377, 392, 443, 565
MboII GAAGA 7 cut(s) 47, 50, 206, 248, 298, 546, 549
MflI RGATCY 2 cut(s) 392, 443
MhlI GDGCHC 2 cut(s) 217, 428
MluCI AATT 1 cut(s) 894
MlyI GAGTC 4 cut(s) 37, 626, 644, 898
MmeI TCCRAC 1 cut(s) 835
MnlI CCTC 9 cut(s) 184, 306, 349, 607, 713, 724, 755, 801, 851
MseI TTAA 4 cut(s) 66, 372, 581, 795
MspI CCGG 3 cut(s) 111, 368, 753
MspR9I CCNGG 5 cut(s) 111, 429, 516, 597, 753
MvaI CCWGG 3 cut(s) 429, 516, 597
MwoI GCNNNNNNNGC 6 cut(s) 55, 160, 169, 248, 432, 499
NciI CCSGG 2 cut(s) 111, 753
NcoI CCATGG 1 cut(s) 23
NdeII GATC 8 cut(s) 12, 116, 204, 358, 377, 392, 443, 565
NlaIII CATG 4 cut(s) 27, 424, 820, 880
NlaIV GGNNCC 1 cut(s) 601
NmuCI GTSAC 1 cut(s) 588
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 698
PfeI GAWTC 6 cut(s) 289, 458, 849, 861, 880, 909
Pfl23II CGTACG 1 cut(s) 269
PkrI GCNGC 4 cut(s) 48, 162, 323, 668
Ple19I CGATCG 1 cut(s) 207
PleI GAGTC 4 cut(s) 36, 625, 643, 897
PmaCI CACGTG 1 cut(s) 212
PmlI CACGTG 1 cut(s) 212
PpsI GAGTC 4 cut(s) 36, 625, 643, 897
Ppu21I YACGTR 1 cut(s) 212
Psp6I CCWGG 3 cut(s) 427, 514, 595
PspCI CACGTG 1 cut(s) 212
PspGI CCWGG 3 cut(s) 427, 514, 595
PspLI CGTACG 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 601
PspPI GGNCC 2 cut(s) 20, 74
PsuI RGATCY 2 cut(s) 392, 443
PvuI CGATCG 1 cut(s) 207
RsaI GTAC 2 cut(s) 271, 466
RsaNI GTAC 2 cut(s) 270, 465
SaqAI TTAA 4 cut(s) 66, 372, 581, 795
SatI GCNGC 4 cut(s) 47, 161, 322, 667
Sau3AI GATC 8 cut(s) 12, 116, 204, 358, 377, 392, 443, 565
Sau96I GGNCC 2 cut(s) 20, 74
ScaI AGTACT 1 cut(s) 466
SchI GAGTC 4 cut(s) 37, 626, 644, 898
ScrFI CCNGG 5 cut(s) 111, 429, 516, 597, 753
SduI GDGCHC 2 cut(s) 217, 428
SexAI ACCWGGT 1 cut(s) 514
SfaNI GCATC 2 cut(s) 181, 816
SinI GGWCC 2 cut(s) 20, 74
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 1 cut(s) 894
SsiI CCGC 9 cut(s) 161, 321, 324, 389, 533, 667, 776, 800, 846
SspMI CTAG 1 cut(s) 510
StyD4I CCNGG 5 cut(s) 109, 427, 514, 595, 751
StyI CCWWGG 1 cut(s) 23
TaaI ACNGT 6 cut(s) 74, 91, 141, 266, 626, 688
TaiI ACGT 3 cut(s) 214, 551, 609
TaqI TCGA 4 cut(s) 302, 543, 662, 912
TasI AATT 1 cut(s) 894
TatI WGTACW 1 cut(s) 464
TauI GCSGC 3 cut(s) 163, 324, 669
TfiI GAWTC 6 cut(s) 289, 458, 849, 861, 880, 909
Tru1I TTAA 4 cut(s) 66, 372, 581, 795
Tru9I TTAA 4 cut(s) 66, 372, 581, 795
TscAI CASTG 3 cut(s) 96, 299, 460
TseFI GTSAC 1 cut(s) 588
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 588
TspDTI ATGAA 1 cut(s) 853
TspGWI ACGGA 5 cut(s) 287, 475, 774, 836, 847
TspRI CASTG 3 cut(s) 96, 299, 460
VpaK11BI GGWCC 2 cut(s) 20, 74
XspI CTAG 1 cut(s) 510
ZrmI AGTACT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.