AT2G23290
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001796
Physical Location & Seq
Reverse (-)
9904506 .. 9906032
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G23290.1

Sequence Viewer

Length: 930 bp
ATGTCTGGTTCGACCCGGAAAGAAATGGATCGGATCAAAGGACCATGGAGTCCTGAAGAAGACGATCTGTTACAATCGTTGGTTCAGAAGCACGGACCAAGGAACTGGTCTCTGATAAGCAAATCAATCCCTGGACGTTCCGGTAAATCTTGCCGTCTCCGTTGGTGTAATCAGCTTTCTCCGGAGGTAGAGCACCGTGGATTCACGGCGGAGGAAGATGATACGATTATACTAGCGCACGCTCGGTTTGGTAACAAGTGGGCGACGATTGCACGGCTTCTCAATGGTCGCACTGATAACGCGATTAAGAATCACTGGAACTCAACGCTGAAGCGGAAATGTAGCGGCGGAGGCGGCGGAGGAGAGGAAGGGCAGAGTTGTGATTTCGGTGGTAATGGAGGGTATGATGGTAATTTAACTGATGAAAAACCGTTAAAACGGAGGGCGAGTGGTGGAGGAGGAGTTGTTGTGGTGACGGCGTTAAGTCCAACGGGATCTGACGTCAGCGAGCAATCGCAATCTAGTGGATCTGTTTTACCGGTTTCTTCTTCTTGTCATGTTTTTAAACCGACGGCGAGAGCTGGTGGAGTGGTGATTGAGTCATCATCGCCGGAGGAGGAGGAGAAAGATCCGATGACTTGTTTGAGGTTGTCTTTGCCTTGGGTCAATGAGTCAACAACTCCACCGGAGTTGTTTCCGGTGAAGAGAGAAGAAGAAGAAGAGAAGGAAAGAGAGATTTCTGGACTTGGTGGAGATTTTATGACGGTGGTGCAGGAGATGATTAAGACGGAGGTTAGGAGTTACATGGCGGATTTACAGCTAGGAAACGGCGGAGGAGCTGGAGGAGGAGCAAGTTCGTGTATGGTGCAAGGAACTAATGGTCGTAATGTAGGGTTTAGAGAGTTTATTGGATTAGGTAGGATCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022622 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0047484 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048527 GO:0048528 GO:0048583 GO:0048584 GO:0048585 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0090696 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901000 GO:1901001 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

309

Amino Acids

33.23

Weight (kDa)

5.72

Isoelectric Point (pI)

70.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 13 - 59 9.9e-20 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 16 - 72 6.4e-16 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 109 1.2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 68 - 116 1.9e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 48
AatII GACGTC 1 cut(s) 504
AccII CGCG 1 cut(s) 302
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 8 cut(s) 209, 334, 345, 348, 354, 357, 809, 831
AclWI GGATC 6 cut(s) 36, 41, 502, 535, 623, 929
AcuI CTGAAG 2 cut(s) 75, 350
AcyI GRCGYC 1 cut(s) 501
AgeI ACCGGT 1 cut(s) 538
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 4 cut(s) 175, 581, 820, 839
AluI AGCT 4 cut(s) 175, 581, 820, 839
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 2 cut(s) 114, 161
AlwI GGATC 6 cut(s) 36, 41, 502, 535, 623, 929
Aor13HI TCCGGA 1 cut(s) 181
AsiGI ACCGGT 1 cut(s) 538
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 2 cut(s) 41, 95
AsuC2I CCSGG 1 cut(s) 16
AsuHPI GGTGA 3 cut(s) 484, 604, 712
AvaII GGWCC 2 cut(s) 41, 95
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 195
BccI CCATC 1 cut(s) 401
BceAI ACGGC 6 cut(s) 138, 222, 290, 492, 588, 844
BciT130I CCWGG 1 cut(s) 132
BcnI CCSGG 1 cut(s) 16
BcoDI GTCTC 2 cut(s) 114, 161
BfaI CTAG 3 cut(s) 233, 522, 821
BisI GCNGC 2 cut(s) 346, 355
BlsI GCNGC 2 cut(s) 347, 356
Bme1390I CCNGG 2 cut(s) 16, 132
Bme18I GGWCC 2 cut(s) 41, 95
BmgT120I GGNCC 2 cut(s) 41, 95
BmrFI CCNGG 2 cut(s) 16, 132
BpiI GAAGAC 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 861
BpuMI CCSGG 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 501
BsaI GGTCTC 1 cut(s) 114
BsaJI CCNNGG 5 cut(s) 44, 98, 130, 196, 659
BsaWI WCCGGW 5 cut(s) 140, 181, 538, 685, 697
BsaXI ACNNNNNCTCC 8 cut(s) 433, 447, 450, 453, 463, 477, 480, 483
Bse118I RCCGGY 1 cut(s) 538
Bse1I ACTGG 2 cut(s) 110, 320
BseAI TCCGGA 1 cut(s) 181
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 5 cut(s) 44, 98, 130, 196, 659
BseNI ACTGG 2 cut(s) 110, 320
BseRI GAGGAG 9 cut(s) 375, 471, 474, 629, 632, 635, 849, 858, 861
BsgI GTGCAG 1 cut(s) 791
Bsh1236I CGCG 1 cut(s) 302
BshTI ACCGGT 1 cut(s) 538
BsiHKAI GWGCWC 1 cut(s) 195
BsiSI CCGG 7 cut(s) 16, 141, 182, 539, 611, 686, 698
BsmAI GTCTC 2 cut(s) 114, 161
BsmBI CGTCTC 1 cut(s) 161
Bso31I GGTCTC 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 195
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 7 cut(s) 28, 33, 64, 494, 527, 628, 921
Bsp19I CCATGG 1 cut(s) 44
BspACI CCGC 8 cut(s) 209, 334, 345, 348, 354, 357, 809, 831
BspEI TCCGGA 1 cut(s) 181
BspFNI CGCG 1 cut(s) 302
BspPI GGATC 6 cut(s) 36, 41, 502, 535, 623, 929
BspTNI GGTCTC 1 cut(s) 114
BsrFI RCCGGY 1 cut(s) 538
BsrI ACTGG 2 cut(s) 110, 320
BssAI RCCGGY 1 cut(s) 538
BssECI CCNNGG 5 cut(s) 44, 98, 130, 196, 659
BssMI GATC 7 cut(s) 28, 33, 64, 494, 527, 628, 921
BssNI GRCGYC 1 cut(s) 501
BssT1I CCWWGG 3 cut(s) 44, 98, 659
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 3 cut(s) 197, 432, 766
Bst6I CTCTTC 2 cut(s) 698, 714
BstACI GRCGYC 1 cut(s) 501
BstC8I GCNNGC 2 cut(s) 240, 509
BstDSI CCRYGG 2 cut(s) 44, 196
BstFNI CGCG 1 cut(s) 302
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 7 cut(s) 31, 36, 67, 497, 530, 631, 924
BstMAI GTCTC 2 cut(s) 114, 161
BstMBI GATC 7 cut(s) 28, 33, 64, 494, 527, 628, 921
BstMWI GCNNNNNNNGC 3 cut(s) 269, 351, 354
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 2 cut(s) 14, 130
BstUI CGCG 1 cut(s) 302
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 3 cut(s) 494, 527, 628
BstXI CCANNNNNNTGG 1 cut(s) 105
BstYI RGATCY 3 cut(s) 494, 527, 628
BtgI CCRYGG 2 cut(s) 44, 196
BtgZI GCGATG 1 cut(s) 591
BtsIMutI CAGTG 2 cut(s) 291, 313
Cac8I GCNNGC 2 cut(s) 240, 509
CfoI GCGC 1 cut(s) 238
Cfr10I RCCGGY 1 cut(s) 538
Cfr13I GGNCC 2 cut(s) 41, 95
CspAI ACCGGT 1 cut(s) 538
CspCI CAANNNNNGTGG 2 cut(s) 672, 707
CviAII CATG 3 cut(s) 45, 557, 805
CviJI RGCY 5 cut(s) 175, 277, 581, 820, 839
CviKI_1 RGCY 5 cut(s) 175, 277, 581, 820, 839
DpnI GATC 7 cut(s) 30, 35, 66, 496, 529, 630, 923
DpnII GATC 7 cut(s) 28, 33, 64, 494, 527, 628, 921
DraI TTTAAA 1 cut(s) 565
DrdI GACNNNNNNGTC 1 cut(s) 48
DseDI GACNNNNNNGTC 1 cut(s) 48
Eam1104I CTCTTC 2 cut(s) 698, 714
EarI CTCTTC 2 cut(s) 698, 714
EciI GGCGGA 5 cut(s) 224, 363, 372, 824, 846
Eco130I CCWWGG 3 cut(s) 44, 98, 659
Eco31I GGTCTC 1 cut(s) 114
Eco47I GGWCC 2 cut(s) 41, 95
Eco57I CTGAAG 2 cut(s) 75, 350
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 3 cut(s) 44, 98, 659
ErhI CCWWGG 3 cut(s) 44, 98, 659
Esp3I CGTCTC 1 cut(s) 161
FaeI CATG 3 cut(s) 48, 560, 808
FaiI YATR 7 cut(s) 46, 230, 405, 558, 761, 806, 863
FatI CATG 3 cut(s) 44, 556, 804
Fnu4HI GCNGC 2 cut(s) 346, 355
Fsp4HI GCNGC 2 cut(s) 346, 355
FspBI CTAG 3 cut(s) 233, 522, 821
GlaI GCGC 1 cut(s) 237
GluI GCNGC 2 cut(s) 346, 355
GsuI CTGGAG 1 cut(s) 861
HapII CCGG 7 cut(s) 16, 141, 182, 539, 611, 686, 698
HhaI GCGC 1 cut(s) 238
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 3 cut(s) 48, 560, 808
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HincII GTYRAC 1 cut(s) 675
HindII GTYRAC 1 cut(s) 675
HinfI GANTC 5 cut(s) 49, 201, 310, 599, 671
HpaII CCGG 7 cut(s) 16, 141, 182, 539, 611, 686, 698
HphI GGTGA 3 cut(s) 484, 604, 712
Hpy166II GTNNAC 1 cut(s) 675
Hpy188I TCNGA 5 cut(s) 33, 87, 114, 499, 633
Hpy188III TCNNGA 3 cut(s) 53, 182, 741
Hpy8I GTNNAC 1 cut(s) 675
Hpy99I CGWCG 2 cut(s) 268, 574
HpyAV CCTTC 2 cut(s) 362, 718
HpyCH4III ACNGT 3 cut(s) 197, 432, 766
HpyCH4IV ACGT 2 cut(s) 136, 501
HpyCH4V TGCA 3 cut(s) 272, 772, 868
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 351, 354
HpySE526I ACGT 2 cut(s) 136, 501
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 3 cut(s) 48, 560, 808
HspAI GCGC 1 cut(s) 236
Kpn2I TCCGGA 1 cut(s) 181
Kzo9I GATC 7 cut(s) 28, 33, 64, 494, 527, 628, 921
LmnI GCTCC 2 cut(s) 836, 848
MaeI CTAG 3 cut(s) 233, 522, 821
MaeII ACGT 2 cut(s) 136, 501
MaeIII GTNAC 4 cut(s) 69, 251, 472, 800
MalI GATC 7 cut(s) 30, 35, 66, 496, 529, 630, 923
MboI GATC 7 cut(s) 28, 33, 64, 494, 527, 628, 921
MflI RGATCY 3 cut(s) 494, 527, 628
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 1 cut(s) 412
MlyI GAGTC 3 cut(s) 58, 608, 680
MmeI TCCRAC 1 cut(s) 512
MroI TCCGGA 1 cut(s) 181
MseI TTAA 6 cut(s) 306, 416, 434, 482, 564, 783
MspI CCGG 7 cut(s) 16, 141, 182, 539, 611, 686, 698
MspR9I CCNGG 2 cut(s) 16, 132
MvaI CCWGG 1 cut(s) 132
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 3 cut(s) 269, 351, 354
NciI CCSGG 1 cut(s) 16
NcoI CCATGG 1 cut(s) 44
NdeII GATC 7 cut(s) 28, 33, 64, 494, 527, 628, 921
NlaIII CATG 3 cut(s) 48, 560, 808
NmuCI GTSAC 1 cut(s) 472
PfeI GAWTC 2 cut(s) 201, 310
PinAI ACCGGT 1 cut(s) 538
PkrI GCNGC 2 cut(s) 347, 356
PleI GAGTC 3 cut(s) 57, 607, 679
PpsI GAGTC 3 cut(s) 57, 607, 679
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspPI GGNCC 2 cut(s) 41, 95
PsuI RGATCY 3 cut(s) 494, 527, 628
SaqAI TTAA 6 cut(s) 306, 416, 434, 482, 564, 783
SatI GCNGC 2 cut(s) 346, 355
Sau3AI GATC 7 cut(s) 28, 33, 64, 494, 527, 628, 921
Sau96I GGNCC 2 cut(s) 41, 95
SchI GAGTC 3 cut(s) 58, 608, 680
ScrFI CCNGG 2 cut(s) 16, 132
SduI GDGCHC 1 cut(s) 195
SinI GGWCC 2 cut(s) 41, 95
Sse9I AATT 1 cut(s) 412
SsiI CCGC 8 cut(s) 209, 334, 345, 348, 354, 357, 809, 831
SspMI CTAG 3 cut(s) 233, 522, 821
StyD4I CCNGG 2 cut(s) 14, 130
StyI CCWWGG 3 cut(s) 44, 98, 659
TaaI ACNGT 3 cut(s) 197, 432, 766
TaiI ACGT 2 cut(s) 139, 504
TaqI TCGA 2 cut(s) 11, 924
TasI AATT 1 cut(s) 412
TauI GCSGC 2 cut(s) 348, 357
TfiI GAWTC 2 cut(s) 201, 310
Tru1I TTAA 6 cut(s) 306, 416, 434, 482, 564, 783
Tru9I TTAA 6 cut(s) 306, 416, 434, 482, 564, 783
TscAI CASTG 2 cut(s) 298, 320
TseFI GTSAC 1 cut(s) 472
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 1 cut(s) 438
TspGWI ACGGA 4 cut(s) 108, 149, 454, 803
TspRI CASTG 2 cut(s) 298, 320
VpaK11BI GGWCC 2 cut(s) 41, 95
XspI CTAG 3 cut(s) 233, 522, 821
ZraI GACGTC 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.