Rmu_sc0000871.1_g000019
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000871.1
Physical Location & Seq
Reverse (-)
83122 .. 84042
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000871.1_g000019.1.cds

Sequence Viewer

Length: 921 bp
atggcttcttcttcttcgaccaagaaagccgcggcggatcggataaaaggtccgtggagcccagaggaagacgaagcgttacagaggctggtccagagctacggcccgaggaactggtctctgatcagcaaatcgatccctggtcgatccggtaagtcgtgccggctacggtggtgcaaccagctctcgccggaggtggagcaccggccgtttactcctgaagaggacgacaccataattcgagcccatgcccggttcggaaacaagtgggccaccatctctcgcttgctcaatggccgcaccgataacgccattaagaaccactggaactccacgctcaagcgcaaattctcgtccttctccgacgacatgtcgcccgagcagccactcaaaagatcggccagcgtcggagcgggtacagcagtgtcgggtctgtacatgaacccgggtagcccatccggatccgatttgagcgattctagtttacccggcgtgattcctccctcgcaagccttccggccggtcgctccggtggcggatccaccgacatcgctcagcctatcgcttcccggatccaatgaagggccgaatcatcagaggtcagcttccggatccggatccagttgggttgtgagcccaaagcccaaggcccagatagttcaacttcaacctcaagtaattcaagctcaacctgaagatgctggaggtggagaggcggcgcgtcagggcaaccataacagtgaggcggggattgataagcagttcttcagcgcagagttcttggatgtgatgcaagagatgatcagaaaggaagtgagaaactatatgtctggggttgatcacaatgggatgttcatgcacactgaagctgccattagaaacgcagttgtaaagcggattgggattagcaaagtggagtag

Protein Analysis

306

Amino Acids

33.2

Weight (kDa)

9.22

Isoelectric Point (pI)

59.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 413
AccII CGCG 2 cut(s) 32, 721
AccIII TCCGGA 3 cut(s) 458, 608, 614
AciI CCGC 9 cut(s) 30, 32, 35, 298, 413, 536, 716, 746, 895
AcoI YGGCCR 4 cut(s) 206, 295, 399, 518
AcsI RAATTY 1 cut(s) 347
AcuI CTGAAG 4 cut(s) 240, 714, 751, 885
AfaI GTAC 2 cut(s) 418, 437
AfiI CCNNNNNNNGG 2 cut(s) 252, 582
AflIII ACRYGT 1 cut(s) 369
AgsI TTSAA 3 cut(s) 662, 668, 683
AhdI GACNNNNNGTC 1 cut(s) 370
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 5 cut(s) 99, 184, 605, 686, 869
AluI AGCT 5 cut(s) 99, 184, 605, 686, 869
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 123
AlwNI CAGNNNCTG 1 cut(s) 88
Ama87I CYCGRG 3 cut(s) 106, 377, 445
Aor13HI TCCGGA 3 cut(s) 458, 608, 614
AoxI GGCC 8 cut(s) 103, 206, 270, 295, 399, 518, 584, 648
ApeKI GCWGC 2 cut(s) 382, 869
ApoI RAATTY 1 cut(s) 347
AspLEI GCGC 3 cut(s) 345, 721, 773
AspS9I GGNCC 6 cut(s) 50, 91, 104, 270, 584, 649
AsuC2I CCSGG 5 cut(s) 253, 446, 447, 489, 570
AvaI CYCGRG 3 cut(s) 106, 377, 445
AvaII GGWCC 2 cut(s) 50, 91
BaeI ACNNNNGTAYC 2 cut(s) 408, 441
BamHI GGATCC 5 cut(s) 461, 538, 572, 611, 617
BanII GRGCYC 3 cut(s) 62, 247, 638
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 2 cut(s) 394, 856
BccI CCATC 2 cut(s) 284, 463
BceAI ACGGC 2 cut(s) 118, 193
BciT130I CCWGG 1 cut(s) 141
BclI TGATCA 3 cut(s) 123, 801, 838
BcnI CCSGG 5 cut(s) 253, 446, 447, 489, 570
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 1 cut(s) 480
BisI GCNGC 6 cut(s) 30, 33, 298, 383, 717, 870
BlpI GCTNAGC 1 cut(s) 554
BlsI GCNGC 6 cut(s) 31, 34, 299, 384, 718, 871
Bme1390I CCNGG 6 cut(s) 141, 253, 446, 447, 489, 570
Bme18I GGWCC 2 cut(s) 50, 91
BmeRI GACNNNNNGTC 1 cut(s) 370
BmeT110I CYCGRG 3 cut(s) 106, 377, 445
BmgT120I GGNCC 6 cut(s) 50, 91, 104, 270, 584, 649
BmiI GGNNCC 6 cut(s) 59, 463, 540, 574, 613, 619
BmrFI CCNGG 6 cut(s) 141, 253, 446, 447, 489, 570
BmsI GCATC 2 cut(s) 688, 780
BpiI GAAGAC 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 723
Bpu1102I GCTNAGC 1 cut(s) 554
BpuEI CTTGAG 2 cut(s) 323, 657
BpuMI CCSGG 5 cut(s) 253, 446, 447, 489, 570
Bsa29I ATCGAT 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 616
BsaI GGTCTC 1 cut(s) 123
BsaJI CCNNGG 6 cut(s) 30, 53, 107, 139, 445, 645
BsaWI WCCGGW 5 cut(s) 149, 458, 529, 608, 614
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 582
Bse118I RCCGGY 3 cut(s) 162, 204, 520
Bse1I ACTGG 3 cut(s) 119, 329, 621
Bse8I GATNNNNATC 1 cut(s) 616
BseAI TCCGGA 3 cut(s) 458, 608, 614
BseBI CCWGG 1 cut(s) 141
BseCI ATCGAT 1 cut(s) 134
BseDI CCNNGG 6 cut(s) 30, 53, 107, 139, 445, 645
BseGI GGATG 3 cut(s) 455, 790, 855
BseJI GATNNNNATC 1 cut(s) 616
BseLI CCNNNNNNNGG 2 cut(s) 252, 582
BseMII CTCAG 1 cut(s) 568
BseNI ACTGG 3 cut(s) 119, 329, 621
BseX3I CGGCCG 2 cut(s) 206, 518
BseXI GCAGC 2 cut(s) 394, 856
Bsh1236I CGCG 2 cut(s) 32, 721
Bsh1285I CGRYCG 3 cut(s) 209, 521, 525
BshFI GGCC 8 cut(s) 105, 208, 272, 297, 401, 520, 586, 650
BshVI ATCGAT 1 cut(s) 134
BsiEI CGRYCG 3 cut(s) 209, 521, 525
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 3 cut(s) 106, 377, 445
BslI CCNNNNNNNGG 2 cut(s) 252, 582
BsmAI GTCTC 1 cut(s) 123
BsnI GGCC 8 cut(s) 105, 208, 272, 297, 401, 520, 586, 650
Bso31I GGTCTC 1 cut(s) 123
BsoBI CYCGRG 3 cut(s) 106, 377, 445
Bsp1286I GDGCHC 4 cut(s) 62, 204, 247, 638
Bsp13I TCCGGA 3 cut(s) 458, 608, 614
Bsp1407I TGTACA 1 cut(s) 435
Bsp1720I GCTNAGC 1 cut(s) 554
BspACI CCGC 9 cut(s) 30, 32, 35, 298, 413, 536, 716, 746, 895
BspANI GGCC 8 cut(s) 105, 208, 272, 297, 401, 520, 586, 650
BspCNI CTCAG 1 cut(s) 567
BspDI ATCGAT 1 cut(s) 134
BspEI TCCGGA 3 cut(s) 458, 608, 614
BspFNI CGCG 2 cut(s) 32, 721
BspLI GGNNCC 6 cut(s) 59, 463, 540, 574, 613, 619
BspTNI GGTCTC 1 cut(s) 123
BsrBI CCGCTC 1 cut(s) 413
BsrFI RCCGGY 3 cut(s) 162, 204, 520
BsrGI TGTACA 1 cut(s) 435
BsrI ACTGG 3 cut(s) 119, 329, 621
BssAI RCCGGY 3 cut(s) 162, 204, 520
BssECI CCNNGG 6 cut(s) 30, 53, 107, 139, 445, 645
BssT1I CCWWGG 1 cut(s) 645
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 171, 740
Bst6I CTCTTC 1 cut(s) 216
BstAUI TGTACA 1 cut(s) 435
BstC8I GCNNGC 4 cut(s) 164, 287, 403, 510
BstDEI CTNAG 1 cut(s) 554
BstDSI CCRYGG 2 cut(s) 30, 53
BstF5I GGATG 3 cut(s) 455, 790, 855
BstFNI CGCG 2 cut(s) 32, 721
BstHHI GCGC 3 cut(s) 345, 721, 773
BstMAI GTCTC 1 cut(s) 123
BstMCI CGRYCG 3 cut(s) 209, 521, 525
BstMWI GCNNNNNNNGC 3 cut(s) 382, 419, 533
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 1 cut(s) 373
BstSCI CCNGG 6 cut(s) 139, 251, 444, 445, 487, 568
BstUI CGCG 2 cut(s) 32, 721
BstV1I GCAGC 2 cut(s) 394, 856
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 5 cut(s) 461, 538, 572, 611, 617
BstYI RGATCY 5 cut(s) 461, 538, 572, 611, 617
BstZI CGGCCG 2 cut(s) 206, 518
Bsu15I ATCGAT 1 cut(s) 134
BsuRI GGCC 8 cut(s) 105, 208, 272, 297, 401, 520, 586, 650
BsuTUI ATCGAT 1 cut(s) 134
BtgI CCRYGG 2 cut(s) 30, 53
BtgZI GCGATG 1 cut(s) 534
BtsCI GGATG 3 cut(s) 455, 790, 855
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 4 cut(s) 322, 429, 745, 861
Cac8I GCNNGC 4 cut(s) 164, 287, 403, 510
CaiI CAGNNNCTG 1 cut(s) 88
CfoI GCGC 3 cut(s) 345, 721, 773
Cfr10I RCCGGY 3 cut(s) 162, 204, 520
Cfr13I GGNCC 6 cut(s) 50, 91, 104, 270, 584, 649
Cfr42I CCGCGG 1 cut(s) 33
Cfr9I CCCGGG 1 cut(s) 445
ClaI ATCGAT 1 cut(s) 134
CseI GACGC 2 cut(s) 394, 710
Csp6I GTAC 2 cut(s) 417, 436
CviAII CATG 4 cut(s) 248, 370, 439, 856
CviQI GTAC 2 cut(s) 417, 436
DdeI CTNAG 1 cut(s) 554
DriI GACNNNNNGTC 1 cut(s) 370
EaeI YGGCCR 4 cut(s) 206, 295, 399, 518
EagI CGGCCG 2 cut(s) 206, 518
Eam1104I CTCTTC 1 cut(s) 216
Eam1105I GACNNNNNGTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 216
EciI GGCGGA 2 cut(s) 50, 551
EclXI CGGCCG 2 cut(s) 206, 518
Eco130I CCWWGG 1 cut(s) 645
Eco24I GRGCYC 3 cut(s) 62, 247, 638
Eco31I GGTCTC 1 cut(s) 123
Eco47I GGWCC 2 cut(s) 50, 91
Eco52I CGGCCG 2 cut(s) 206, 518
Eco57I CTGAAG 4 cut(s) 240, 714, 751, 885
Eco88I CYCGRG 3 cut(s) 106, 377, 445
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 645
EcoT38I GRGCYC 3 cut(s) 62, 247, 638
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 4 cut(s) 251, 373, 442, 859
FaiI YATR 8 cut(s) 236, 249, 371, 440, 735, 825, 827, 857
FalI AAGNNNNNCTT 2 cut(s) 749, 781
FatI CATG 4 cut(s) 247, 369, 438, 855
FauI CCCGC 2 cut(s) 406, 739
FbaI TGATCA 3 cut(s) 123, 801, 838
Fnu4HI GCNGC 6 cut(s) 30, 33, 298, 383, 717, 870
FokI GGATG 3 cut(s) 442, 797, 862
FriOI GRGCYC 3 cut(s) 62, 247, 638
Fsp4HI GCNGC 6 cut(s) 30, 33, 298, 383, 717, 870
FspBI CTAG 1 cut(s) 480
GlaI GCGC 3 cut(s) 344, 720, 772
GluI GCNGC 6 cut(s) 30, 33, 298, 383, 717, 870
GsuI CTGGAG 1 cut(s) 723
HaeIII GGCC 8 cut(s) 105, 208, 272, 297, 401, 520, 586, 650
HgaI GACGC 2 cut(s) 394, 710
HhaI GCGC 3 cut(s) 345, 721, 773
Hin1II CATG 4 cut(s) 251, 373, 442, 859
Hin6I GCGC 3 cut(s) 343, 719, 771
HinP1I GCGC 3 cut(s) 343, 719, 771
HinfI GANTC 3 cut(s) 476, 496, 589
Hpy166II GTNNAC 2 cut(s) 213, 485
Hpy188I TCNGA 8 cut(s) 42, 123, 260, 364, 410, 466, 597, 806
Hpy188III TCNNGA 5 cut(s) 94, 218, 459, 609, 615
Hpy8I GTNNAC 2 cut(s) 213, 485
Hpy99I CGWCG 2 cut(s) 368, 410
HpyAV CCTTC 3 cut(s) 367, 523, 575
HpyCH4III ACNGT 2 cut(s) 171, 740
HpyCH4V TGCA 3 cut(s) 177, 793, 859
HpyF10VI GCNNNNNNNGC 3 cut(s) 382, 419, 533
HpyF3I CTNAG 1 cut(s) 554
Hsp92II CATG 4 cut(s) 251, 373, 442, 859
HspAI GCGC 3 cut(s) 343, 719, 771
Kpn2I TCCGGA 3 cut(s) 458, 608, 614
KroI GCCGGC 1 cut(s) 162
KroNI GCCGGC 1 cut(s) 164
Ksp22I TGATCA 3 cut(s) 123, 801, 838
KspI CCGCGG 1 cut(s) 33
LmnI GCTCC 4 cut(s) 57, 199, 410, 532
Lsp1109I GCAGC 2 cut(s) 394, 856
LweI GCATC 2 cut(s) 688, 780
MaeI CTAG 1 cut(s) 480
MaeIII GTNAC 1 cut(s) 78
MbiI CCGCTC 1 cut(s) 413
MboII GAAGA 6 cut(s) 3, 6, 80, 233, 707, 757
MflI RGATCY 5 cut(s) 461, 538, 572, 611, 617
MhlI GDGCHC 4 cut(s) 62, 204, 247, 638
MluCI AATT 3 cut(s) 237, 347, 678
MmeI TCCRAC 2 cut(s) 387, 388
MroI TCCGGA 3 cut(s) 458, 608, 614
MroNI GCCGGC 1 cut(s) 162
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 738
MspA1I CMGCKG 1 cut(s) 32
MspR9I CCNGG 6 cut(s) 141, 253, 446, 447, 489, 570
MvaI CCWGG 1 cut(s) 141
MvnI CGCG 2 cut(s) 32, 721
MwoI GCNNNNNNNGC 3 cut(s) 382, 419, 533
NaeI GCCGGC 1 cut(s) 164
NciI CCSGG 5 cut(s) 253, 446, 447, 489, 570
NgoMIV GCCGGC 1 cut(s) 162
NlaIII CATG 4 cut(s) 251, 373, 442, 859
NlaIV GGNNCC 6 cut(s) 59, 463, 540, 574, 613, 619
NspI RCATGY 1 cut(s) 373
PciI ACATGT 1 cut(s) 369
PdiI GCCGGC 1 cut(s) 164
PfeI GAWTC 3 cut(s) 476, 496, 589
PfoI TCCNGGA 1 cut(s) 568
PkrI GCNGC 6 cut(s) 31, 34, 299, 384, 718, 871
PscI ACATGT 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 6 cut(s) 59, 463, 540, 574, 613, 619
PspPI GGNCC 6 cut(s) 50, 91, 104, 270, 584, 649
PstNI CAGNNNCTG 1 cut(s) 88
PsuI RGATCY 5 cut(s) 461, 538, 572, 611, 617
RsaI GTAC 2 cut(s) 418, 437
RsaNI GTAC 2 cut(s) 417, 436
RseI CAYNNNNRTG 1 cut(s) 738
SacII CCGCGG 1 cut(s) 33
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 6 cut(s) 30, 33, 298, 383, 717, 870
Sau96I GGNCC 6 cut(s) 50, 91, 104, 270, 584, 649
ScrFI CCNGG 6 cut(s) 141, 253, 446, 447, 489, 570
SduI GDGCHC 4 cut(s) 62, 204, 247, 638
SfaNI GCATC 2 cut(s) 688, 780
Sfr303I CCGCGG 1 cut(s) 33
SgrBI CCGCGG 1 cut(s) 33
SinI GGWCC 2 cut(s) 50, 91
SmaI CCCGGG 1 cut(s) 447
SmiMI CAYNNNNRTG 1 cut(s) 738
SmlI CTYRAG 2 cut(s) 338, 672
SmoI CTYRAG 2 cut(s) 338, 672
Sse9I AATT 3 cut(s) 237, 347, 678
SsiI CCGC 9 cut(s) 30, 32, 35, 298, 413, 536, 716, 746, 895
SspMI CTAG 1 cut(s) 480
StyD4I CCNGG 6 cut(s) 139, 251, 444, 445, 487, 568
StyI CCWWGG 1 cut(s) 645
TaaI ACNGT 2 cut(s) 171, 740
TaqI TCGA 4 cut(s) 17, 134, 145, 241
TasI AATT 3 cut(s) 237, 347, 678
TatI WGTACW 1 cut(s) 435
TauI GCSGC 4 cut(s) 32, 35, 300, 719
TfiI GAWTC 3 cut(s) 476, 496, 589
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 4 cut(s) 329, 429, 745, 868
TseI GCWGC 2 cut(s) 382, 869
TspDTI ATGAA 3 cut(s) 455, 594, 844
TspGWI ACGGA 1 cut(s) 42
TspMI CCCGGG 1 cut(s) 445
TspRI CASTG 4 cut(s) 329, 429, 745, 868
VpaK11BI GGWCC 2 cut(s) 50, 91
XapI RAATTY 1 cut(s) 347
XceI RCATGY 1 cut(s) 373
XmaI CCCGGG 1 cut(s) 445
XspI CTAG 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.