transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G23290 AT4G37260 AT5G67300 |
| fragaria_vesca | FvH4_1g16770 FvH4_2g05210 FvH4_2g33810 FvH4_2g33810 |
| malus_domestica | MD02G1179000.v1.1 MD05G1089600.v1.1 MD08G1092000.v1.1 MD15G1076600.v1.1 MD15G1288600.v1.1 |
| prunus_persica | Prupe.1G430000_v2.0.a1 Prupe.6G229000_v2.0.a1 Prupe.8G134900_v2.0.a1 |
| pyrus_communis | pycom02g14500 pycom05g08850 pycom08g07470 pycom15g07140 |
| rosa_chinensis | RchiOBHm_Chr2g0106671 RchiOBHm_Chr6g0255341 RchiOBHm_Chr6g0308731 |
| rosa_laevigata | RLG00000010626 RLG00000014846 RLG00000017529 |
| rosa_multiflora | Rmu_co8261837.1_g000001 Rmu_sc0000871.1_g000019 Rmu_sc0000903.1_g000030 Rmu_sc0004000.1_g000004 Rmu_sc0011027.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00136900 Rroxscaffold_7G00159990 Rroxscaffold_7G00210080 |
| rosa_rugosa | Rorug02G0137600 Rorug05G0557500 Rorug06G0367900 |
| rosa_samantha | Rh2BG199800 Rh6AG075800 Rh6AG478900 Rh6BG067700 Rh6BG488500 Rh6CG067400 Rh6CG493800 Rh6DG479400 Rh7BG300900 |
| rosa_wichuraiana | Rw2G014830 Rw6G041730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 413 |
| AccII | CGCG | 2 cut(s) | 32, 721 |
| AccIII | TCCGGA | 3 cut(s) | 458, 608, 614 |
| AciI | CCGC | 9 cut(s) | 30, 32, 35, 298, 413, 536, 716, 746, 895 |
| AcoI | YGGCCR | 4 cut(s) | 206, 295, 399, 518 |
| AcsI | RAATTY | 1 cut(s) | 347 |
| AcuI | CTGAAG | 4 cut(s) | 240, 714, 751, 885 |
| AfaI | GTAC | 2 cut(s) | 418, 437 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 252, 582 |
| AflIII | ACRYGT | 1 cut(s) | 369 |
| AgsI | TTSAA | 3 cut(s) | 662, 668, 683 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 370 |
| AjnI | CCWGG | 1 cut(s) | 139 |
| AluBI | AGCT | 5 cut(s) | 99, 184, 605, 686, 869 |
| AluI | AGCT | 5 cut(s) | 99, 184, 605, 686, 869 |
| Alw21I | GWGCWC | 1 cut(s) | 204 |
| Alw26I | GTCTC | 1 cut(s) | 123 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 88 |
| Ama87I | CYCGRG | 3 cut(s) | 106, 377, 445 |
| Aor13HI | TCCGGA | 3 cut(s) | 458, 608, 614 |
| AoxI | GGCC | 8 cut(s) | 103, 206, 270, 295, 399, 518, 584, 648 |
| ApeKI | GCWGC | 2 cut(s) | 382, 869 |
| ApoI | RAATTY | 1 cut(s) | 347 |
| AspLEI | GCGC | 3 cut(s) | 345, 721, 773 |
| AspS9I | GGNCC | 6 cut(s) | 50, 91, 104, 270, 584, 649 |
| AsuC2I | CCSGG | 5 cut(s) | 253, 446, 447, 489, 570 |
| AvaI | CYCGRG | 3 cut(s) | 106, 377, 445 |
| AvaII | GGWCC | 2 cut(s) | 50, 91 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 408, 441 |
| BamHI | GGATCC | 5 cut(s) | 461, 538, 572, 611, 617 |
| BanII | GRGCYC | 3 cut(s) | 62, 247, 638 |
| BbsI | GAAGAC | 1 cut(s) | 75 |
| Bbv12I | GWGCWC | 1 cut(s) | 204 |
| BbvI | GCAGC | 2 cut(s) | 394, 856 |
| BccI | CCATC | 2 cut(s) | 284, 463 |
| BceAI | ACGGC | 2 cut(s) | 118, 193 |
| BciT130I | CCWGG | 1 cut(s) | 141 |
| BclI | TGATCA | 3 cut(s) | 123, 801, 838 |
| BcnI | CCSGG | 5 cut(s) | 253, 446, 447, 489, 570 |
| BcoDI | GTCTC | 1 cut(s) | 123 |
| BfaI | CTAG | 1 cut(s) | 480 |
| BisI | GCNGC | 6 cut(s) | 30, 33, 298, 383, 717, 870 |
| BlpI | GCTNAGC | 1 cut(s) | 554 |
| BlsI | GCNGC | 6 cut(s) | 31, 34, 299, 384, 718, 871 |
| Bme1390I | CCNGG | 6 cut(s) | 141, 253, 446, 447, 489, 570 |
| Bme18I | GGWCC | 2 cut(s) | 50, 91 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 370 |
| BmeT110I | CYCGRG | 3 cut(s) | 106, 377, 445 |
| BmgT120I | GGNCC | 6 cut(s) | 50, 91, 104, 270, 584, 649 |
| BmiI | GGNNCC | 6 cut(s) | 59, 463, 540, 574, 613, 619 |
| BmrFI | CCNGG | 6 cut(s) | 141, 253, 446, 447, 489, 570 |
| BmsI | GCATC | 2 cut(s) | 688, 780 |
| BpiI | GAAGAC | 1 cut(s) | 75 |
| BpmI | CTGGAG | 1 cut(s) | 723 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 554 |
| BpuEI | CTTGAG | 2 cut(s) | 323, 657 |
| BpuMI | CCSGG | 5 cut(s) | 253, 446, 447, 489, 570 |
| Bsa29I | ATCGAT | 1 cut(s) | 134 |
| BsaBI | GATNNNNATC | 1 cut(s) | 616 |
| BsaI | GGTCTC | 1 cut(s) | 123 |
| BsaJI | CCNNGG | 6 cut(s) | 30, 53, 107, 139, 445, 645 |
| BsaWI | WCCGGW | 5 cut(s) | 149, 458, 529, 608, 614 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 314, 344 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 252, 582 |
| Bse118I | RCCGGY | 3 cut(s) | 162, 204, 520 |
| Bse1I | ACTGG | 3 cut(s) | 119, 329, 621 |
| Bse8I | GATNNNNATC | 1 cut(s) | 616 |
| BseAI | TCCGGA | 3 cut(s) | 458, 608, 614 |
| BseBI | CCWGG | 1 cut(s) | 141 |
| BseCI | ATCGAT | 1 cut(s) | 134 |
| BseDI | CCNNGG | 6 cut(s) | 30, 53, 107, 139, 445, 645 |
| BseGI | GGATG | 3 cut(s) | 455, 790, 855 |
| BseJI | GATNNNNATC | 1 cut(s) | 616 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 252, 582 |
| BseMII | CTCAG | 1 cut(s) | 568 |
| BseNI | ACTGG | 3 cut(s) | 119, 329, 621 |
| BseX3I | CGGCCG | 2 cut(s) | 206, 518 |
| BseXI | GCAGC | 2 cut(s) | 394, 856 |
| Bsh1236I | CGCG | 2 cut(s) | 32, 721 |
| Bsh1285I | CGRYCG | 3 cut(s) | 209, 521, 525 |
| BshFI | GGCC | 8 cut(s) | 105, 208, 272, 297, 401, 520, 586, 650 |
| BshVI | ATCGAT | 1 cut(s) | 134 |
| BsiEI | CGRYCG | 3 cut(s) | 209, 521, 525 |
| BsiHKAI | GWGCWC | 1 cut(s) | 204 |
| BsiHKCI | CYCGRG | 3 cut(s) | 106, 377, 445 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 252, 582 |
| BsmAI | GTCTC | 1 cut(s) | 123 |
| BsnI | GGCC | 8 cut(s) | 105, 208, 272, 297, 401, 520, 586, 650 |
| Bso31I | GGTCTC | 1 cut(s) | 123 |
| BsoBI | CYCGRG | 3 cut(s) | 106, 377, 445 |
| Bsp1286I | GDGCHC | 4 cut(s) | 62, 204, 247, 638 |
| Bsp13I | TCCGGA | 3 cut(s) | 458, 608, 614 |
| Bsp1407I | TGTACA | 1 cut(s) | 435 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 554 |
| BspACI | CCGC | 9 cut(s) | 30, 32, 35, 298, 413, 536, 716, 746, 895 |
| BspANI | GGCC | 8 cut(s) | 105, 208, 272, 297, 401, 520, 586, 650 |
| BspCNI | CTCAG | 1 cut(s) | 567 |
| BspDI | ATCGAT | 1 cut(s) | 134 |
| BspEI | TCCGGA | 3 cut(s) | 458, 608, 614 |
| BspFNI | CGCG | 2 cut(s) | 32, 721 |
| BspLI | GGNNCC | 6 cut(s) | 59, 463, 540, 574, 613, 619 |
| BspTNI | GGTCTC | 1 cut(s) | 123 |
| BsrBI | CCGCTC | 1 cut(s) | 413 |
| BsrFI | RCCGGY | 3 cut(s) | 162, 204, 520 |
| BsrGI | TGTACA | 1 cut(s) | 435 |
| BsrI | ACTGG | 3 cut(s) | 119, 329, 621 |
| BssAI | RCCGGY | 3 cut(s) | 162, 204, 520 |
| BssECI | CCNNGG | 6 cut(s) | 30, 53, 107, 139, 445, 645 |
| BssT1I | CCWWGG | 1 cut(s) | 645 |
| Bst2UI | CCWGG | 1 cut(s) | 141 |
| Bst4CI | ACNGT | 2 cut(s) | 171, 740 |
| Bst6I | CTCTTC | 1 cut(s) | 216 |
| BstAUI | TGTACA | 1 cut(s) | 435 |
| BstC8I | GCNNGC | 4 cut(s) | 164, 287, 403, 510 |
| BstDEI | CTNAG | 1 cut(s) | 554 |
| BstDSI | CCRYGG | 2 cut(s) | 30, 53 |
| BstF5I | GGATG | 3 cut(s) | 455, 790, 855 |
| BstFNI | CGCG | 2 cut(s) | 32, 721 |
| BstHHI | GCGC | 3 cut(s) | 345, 721, 773 |
| BstMAI | GTCTC | 1 cut(s) | 123 |
| BstMCI | CGRYCG | 3 cut(s) | 209, 521, 525 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 382, 419, 533 |
| BstNI | CCWGG | 1 cut(s) | 141 |
| BstNSI | RCATGY | 1 cut(s) | 373 |
| BstSCI | CCNGG | 6 cut(s) | 139, 251, 444, 445, 487, 568 |
| BstUI | CGCG | 2 cut(s) | 32, 721 |
| BstV1I | GCAGC | 2 cut(s) | 394, 856 |
| BstV2I | GAAGAC | 1 cut(s) | 75 |
| BstX2I | RGATCY | 5 cut(s) | 461, 538, 572, 611, 617 |
| BstYI | RGATCY | 5 cut(s) | 461, 538, 572, 611, 617 |
| BstZI | CGGCCG | 2 cut(s) | 206, 518 |
| Bsu15I | ATCGAT | 1 cut(s) | 134 |
| BsuRI | GGCC | 8 cut(s) | 105, 208, 272, 297, 401, 520, 586, 650 |
| BsuTUI | ATCGAT | 1 cut(s) | 134 |
| BtgI | CCRYGG | 2 cut(s) | 30, 53 |
| BtgZI | GCGATG | 1 cut(s) | 534 |
| BtsCI | GGATG | 3 cut(s) | 455, 790, 855 |
| BtsI | GCAGTG | 1 cut(s) | 429 |
| BtsIMutI | CAGTG | 4 cut(s) | 322, 429, 745, 861 |
| Cac8I | GCNNGC | 4 cut(s) | 164, 287, 403, 510 |
| CaiI | CAGNNNCTG | 1 cut(s) | 88 |
| CfoI | GCGC | 3 cut(s) | 345, 721, 773 |
| Cfr10I | RCCGGY | 3 cut(s) | 162, 204, 520 |
| Cfr13I | GGNCC | 6 cut(s) | 50, 91, 104, 270, 584, 649 |
| Cfr42I | CCGCGG | 1 cut(s) | 33 |
| Cfr9I | CCCGGG | 1 cut(s) | 445 |
| ClaI | ATCGAT | 1 cut(s) | 134 |
| CseI | GACGC | 2 cut(s) | 394, 710 |
| Csp6I | GTAC | 2 cut(s) | 417, 436 |
| CviAII | CATG | 4 cut(s) | 248, 370, 439, 856 |
| CviQI | GTAC | 2 cut(s) | 417, 436 |
| DdeI | CTNAG | 1 cut(s) | 554 |
| DriI | GACNNNNNGTC | 1 cut(s) | 370 |
| EaeI | YGGCCR | 4 cut(s) | 206, 295, 399, 518 |
| EagI | CGGCCG | 2 cut(s) | 206, 518 |
| Eam1104I | CTCTTC | 1 cut(s) | 216 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 370 |
| EarI | CTCTTC | 1 cut(s) | 216 |
| EciI | GGCGGA | 2 cut(s) | 50, 551 |
| EclXI | CGGCCG | 2 cut(s) | 206, 518 |
| Eco130I | CCWWGG | 1 cut(s) | 645 |
| Eco24I | GRGCYC | 3 cut(s) | 62, 247, 638 |
| Eco31I | GGTCTC | 1 cut(s) | 123 |
| Eco47I | GGWCC | 2 cut(s) | 50, 91 |
| Eco52I | CGGCCG | 2 cut(s) | 206, 518 |
| Eco57I | CTGAAG | 4 cut(s) | 240, 714, 751, 885 |
| Eco88I | CYCGRG | 3 cut(s) | 106, 377, 445 |
| EcoRII | CCWGG | 1 cut(s) | 139 |
| EcoT14I | CCWWGG | 1 cut(s) | 645 |
| EcoT38I | GRGCYC | 3 cut(s) | 62, 247, 638 |
| ErhI | CCWWGG | 1 cut(s) | 645 |
| FaeI | CATG | 4 cut(s) | 251, 373, 442, 859 |
| FaiI | YATR | 8 cut(s) | 236, 249, 371, 440, 735, 825, 827, 857 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 749, 781 |
| FatI | CATG | 4 cut(s) | 247, 369, 438, 855 |
| FauI | CCCGC | 2 cut(s) | 406, 739 |
| FbaI | TGATCA | 3 cut(s) | 123, 801, 838 |
| Fnu4HI | GCNGC | 6 cut(s) | 30, 33, 298, 383, 717, 870 |
| FokI | GGATG | 3 cut(s) | 442, 797, 862 |
| FriOI | GRGCYC | 3 cut(s) | 62, 247, 638 |
| Fsp4HI | GCNGC | 6 cut(s) | 30, 33, 298, 383, 717, 870 |
| FspBI | CTAG | 1 cut(s) | 480 |
| GlaI | GCGC | 3 cut(s) | 344, 720, 772 |
| GluI | GCNGC | 6 cut(s) | 30, 33, 298, 383, 717, 870 |
| GsuI | CTGGAG | 1 cut(s) | 723 |
| HaeIII | GGCC | 8 cut(s) | 105, 208, 272, 297, 401, 520, 586, 650 |
| HgaI | GACGC | 2 cut(s) | 394, 710 |
| HhaI | GCGC | 3 cut(s) | 345, 721, 773 |
| Hin1II | CATG | 4 cut(s) | 251, 373, 442, 859 |
| Hin6I | GCGC | 3 cut(s) | 343, 719, 771 |
| HinP1I | GCGC | 3 cut(s) | 343, 719, 771 |
| HinfI | GANTC | 3 cut(s) | 476, 496, 589 |
| Hpy166II | GTNNAC | 2 cut(s) | 213, 485 |
| Hpy188I | TCNGA | 8 cut(s) | 42, 123, 260, 364, 410, 466, 597, 806 |
| Hpy188III | TCNNGA | 5 cut(s) | 94, 218, 459, 609, 615 |
| Hpy8I | GTNNAC | 2 cut(s) | 213, 485 |
| Hpy99I | CGWCG | 2 cut(s) | 368, 410 |
| HpyAV | CCTTC | 3 cut(s) | 367, 523, 575 |
| HpyCH4III | ACNGT | 2 cut(s) | 171, 740 |
| HpyCH4V | TGCA | 3 cut(s) | 177, 793, 859 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 382, 419, 533 |
| HpyF3I | CTNAG | 1 cut(s) | 554 |
| Hsp92II | CATG | 4 cut(s) | 251, 373, 442, 859 |
| HspAI | GCGC | 3 cut(s) | 343, 719, 771 |
| Kpn2I | TCCGGA | 3 cut(s) | 458, 608, 614 |
| KroI | GCCGGC | 1 cut(s) | 162 |
| KroNI | GCCGGC | 1 cut(s) | 164 |
| Ksp22I | TGATCA | 3 cut(s) | 123, 801, 838 |
| KspI | CCGCGG | 1 cut(s) | 33 |
| LmnI | GCTCC | 4 cut(s) | 57, 199, 410, 532 |
| Lsp1109I | GCAGC | 2 cut(s) | 394, 856 |
| LweI | GCATC | 2 cut(s) | 688, 780 |
| MaeI | CTAG | 1 cut(s) | 480 |
| MaeIII | GTNAC | 1 cut(s) | 78 |
| MbiI | CCGCTC | 1 cut(s) | 413 |
| MboII | GAAGA | 6 cut(s) | 3, 6, 80, 233, 707, 757 |
| MflI | RGATCY | 5 cut(s) | 461, 538, 572, 611, 617 |
| MhlI | GDGCHC | 4 cut(s) | 62, 204, 247, 638 |
| MluCI | AATT | 3 cut(s) | 237, 347, 678 |
| MmeI | TCCRAC | 2 cut(s) | 387, 388 |
| MroI | TCCGGA | 3 cut(s) | 458, 608, 614 |
| MroNI | GCCGGC | 1 cut(s) | 162 |
| MseI | TTAA | 1 cut(s) | 315 |
| MslI | CAYNNNNRTG | 1 cut(s) | 738 |
| MspA1I | CMGCKG | 1 cut(s) | 32 |
| MspR9I | CCNGG | 6 cut(s) | 141, 253, 446, 447, 489, 570 |
| MvaI | CCWGG | 1 cut(s) | 141 |
| MvnI | CGCG | 2 cut(s) | 32, 721 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 382, 419, 533 |
| NaeI | GCCGGC | 1 cut(s) | 164 |
| NciI | CCSGG | 5 cut(s) | 253, 446, 447, 489, 570 |
| NgoMIV | GCCGGC | 1 cut(s) | 162 |
| NlaIII | CATG | 4 cut(s) | 251, 373, 442, 859 |
| NlaIV | GGNNCC | 6 cut(s) | 59, 463, 540, 574, 613, 619 |
| NspI | RCATGY | 1 cut(s) | 373 |
| PciI | ACATGT | 1 cut(s) | 369 |
| PdiI | GCCGGC | 1 cut(s) | 164 |
| PfeI | GAWTC | 3 cut(s) | 476, 496, 589 |
| PfoI | TCCNGGA | 1 cut(s) | 568 |
| PkrI | GCNGC | 6 cut(s) | 31, 34, 299, 384, 718, 871 |
| PscI | ACATGT | 1 cut(s) | 369 |
| Psp6I | CCWGG | 1 cut(s) | 139 |
| PspGI | CCWGG | 1 cut(s) | 139 |
| PspN4I | GGNNCC | 6 cut(s) | 59, 463, 540, 574, 613, 619 |
| PspPI | GGNCC | 6 cut(s) | 50, 91, 104, 270, 584, 649 |
| PstNI | CAGNNNCTG | 1 cut(s) | 88 |
| PsuI | RGATCY | 5 cut(s) | 461, 538, 572, 611, 617 |
| RsaI | GTAC | 2 cut(s) | 418, 437 |
| RsaNI | GTAC | 2 cut(s) | 417, 436 |
| RseI | CAYNNNNRTG | 1 cut(s) | 738 |
| SacII | CCGCGG | 1 cut(s) | 33 |
| SaqAI | TTAA | 1 cut(s) | 315 |
| SatI | GCNGC | 6 cut(s) | 30, 33, 298, 383, 717, 870 |
| Sau96I | GGNCC | 6 cut(s) | 50, 91, 104, 270, 584, 649 |
| ScrFI | CCNGG | 6 cut(s) | 141, 253, 446, 447, 489, 570 |
| SduI | GDGCHC | 4 cut(s) | 62, 204, 247, 638 |
| SfaNI | GCATC | 2 cut(s) | 688, 780 |
| Sfr303I | CCGCGG | 1 cut(s) | 33 |
| SgrBI | CCGCGG | 1 cut(s) | 33 |
| SinI | GGWCC | 2 cut(s) | 50, 91 |
| SmaI | CCCGGG | 1 cut(s) | 447 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 738 |
| SmlI | CTYRAG | 2 cut(s) | 338, 672 |
| SmoI | CTYRAG | 2 cut(s) | 338, 672 |
| Sse9I | AATT | 3 cut(s) | 237, 347, 678 |
| SsiI | CCGC | 9 cut(s) | 30, 32, 35, 298, 413, 536, 716, 746, 895 |
| SspMI | CTAG | 1 cut(s) | 480 |
| StyD4I | CCNGG | 6 cut(s) | 139, 251, 444, 445, 487, 568 |
| StyI | CCWWGG | 1 cut(s) | 645 |
| TaaI | ACNGT | 2 cut(s) | 171, 740 |
| TaqI | TCGA | 4 cut(s) | 17, 134, 145, 241 |
| TasI | AATT | 3 cut(s) | 237, 347, 678 |
| TatI | WGTACW | 1 cut(s) | 435 |
| TauI | GCSGC | 4 cut(s) | 32, 35, 300, 719 |
| TfiI | GAWTC | 3 cut(s) | 476, 496, 589 |
| Tru1I | TTAA | 1 cut(s) | 315 |
| Tru9I | TTAA | 1 cut(s) | 315 |
| TscAI | CASTG | 4 cut(s) | 329, 429, 745, 868 |
| TseI | GCWGC | 2 cut(s) | 382, 869 |
| TspDTI | ATGAA | 3 cut(s) | 455, 594, 844 |
| TspGWI | ACGGA | 1 cut(s) | 42 |
| TspMI | CCCGGG | 1 cut(s) | 445 |
| TspRI | CASTG | 4 cut(s) | 329, 429, 745, 868 |
| VpaK11BI | GGWCC | 2 cut(s) | 50, 91 |
| XapI | RAATTY | 1 cut(s) | 347 |
| XceI | RCATGY | 1 cut(s) | 373 |
| XmaI | CCCGGG | 1 cut(s) | 445 |
| XspI | CTAG | 1 cut(s) | 480 |