Rmu_co8261837.1_g000001
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8261837.1
OG0001796
Physical Location & Seq
Forward (+)
1 .. 795
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8261837.1_g000001.1.cds

Sequence Viewer

Length: 795 bp
gaagaggacgacttgctgaggaagctggtgcagcggcacggcgctcggaactggacgctgataagcaagtcgattcccggccggtccggcaagtcgtgccggcttcggtggtgcaatcagctctcgccggaggtggagcaccgggcgttcacggcggaggaggacaatattatcgcggcggcgcattccaagttcggcaacaagtgggccaccatagccaggctcctcaacggccgtacggacaatgcgatcaagaaccactggaactccactctgaagcggaagtactcgtccatggcggaagacggcgtcttcggcggaggcggttcgatcgaggagcatcatcaccaccaccacctcaggccggagaagaaatctgcgacggtttcggtgtctggccgcggatacagtccgacgagcccgtccggatccgacgtcagcgactccggcgtggtgcctgcagtgtcgtcggcgcaggtgttcaggccagtggcgagagcagtgttgaggacggagtcgccgtcgagccagaacgaaatgatccacaatgaaccggagccgtcgactctgctgactctgtcgttacctggaggctactcgaccgagttggcgactcgccgagaagaaagaacgacgtcgttgcagcagcagcagaaggaggctgagaatgagaacagaacgatgtcgtttgggccggagttcatgtcttttatgcaggagatgattaggagggaggttaggaactacatggatgacatgaacggtcagcactttggtatacccaagctttcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

264

Amino Acids

29.58

Weight (kDa)

8.58

Isoelectric Point (pI)

63.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 466
AasI GACNNNNNNGTC 1 cut(s) 421
AatII GACGTC 2 cut(s) 438, 638
Acc36I ACCTGC 1 cut(s) 466
AccB1I GGYRCC 1 cut(s) 454
AccI GTMKAC 2 cut(s) 563, 778
AccII CGCG 2 cut(s) 176, 402
AccIII TCCGGA 1 cut(s) 425
AclWI GGATC 3 cut(s) 423, 436, 535
AcoI YGGCCR 3 cut(s) 79, 232, 397
AcuI CTGAAG 1 cut(s) 296
AcyI GRCGYC 3 cut(s) 309, 435, 635
AfaI GTAC 2 cut(s) 238, 287
AfiI CCNNNNNNNGG 2 cut(s) 219, 364
AjnI CCWGG 2 cut(s) 218, 586
AluBI AGCT 3 cut(s) 25, 121, 787
AluI AGCT 3 cut(s) 25, 121, 787
Alw21I GWGCWC 1 cut(s) 141
AlwI GGATC 3 cut(s) 423, 436, 535
Aor13HI TCCGGA 1 cut(s) 425
AoxI GGCC 7 cut(s) 79, 207, 232, 362, 397, 485, 692
ApeKI GCWGC 4 cut(s) 31, 643, 646, 649
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
AspLEI GCGC 3 cut(s) 44, 184, 475
AspS9I GGNCC 3 cut(s) 84, 207, 692
AsuC2I CCSGG 2 cut(s) 78, 143
AsuHPI GGTGA 1 cut(s) 338
AvaII GGWCC 1 cut(s) 84
AxyI CCTNAGG 1 cut(s) 359
BamHI GGATCC 1 cut(s) 428
BanI GGYRCC 1 cut(s) 454
BanII GRGCYC 1 cut(s) 422
BarI GAAGNNNNNNTAC 2 cut(s) 269, 301
BbsI GAAGAC 2 cut(s) 304, 309
Bbv12I GWGCWC 1 cut(s) 141
BbvCI CCTCAGC 1 cut(s) 17
BbvI GCAGC 4 cut(s) 43, 655, 658, 661
BceAI ACGGC 7 cut(s) 55, 168, 219, 247, 322, 505, 544
BcgI CGANNNNNNTGC 6 cut(s) 26, 60, 450, 484, 622, 656
BciT130I CCWGG 2 cut(s) 220, 588
BciVI GTATCC 1 cut(s) 398
BcnI CCSGG 2 cut(s) 78, 143
BfmI CTRYAG 1 cut(s) 459
BfoI RGCGCY 1 cut(s) 45
BfuAI ACCTGC 1 cut(s) 466
BfuI GTATCC 1 cut(s) 398
BglI GCCNNNNNGGC 1 cut(s) 87
BisI GCNGC 8 cut(s) 32, 35, 177, 180, 400, 644, 647, 650
BlsI GCNGC 8 cut(s) 33, 36, 178, 181, 401, 645, 648, 651
BmcAI AGTACT 1 cut(s) 287
Bme1390I CCNGG 4 cut(s) 78, 143, 220, 588
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 3 cut(s) 84, 207, 692
BmiI GGNNCC 4 cut(s) 224, 430, 456, 558
BmrFI CCNGG 4 cut(s) 78, 143, 220, 588
BmsI GCATC 1 cut(s) 349
BpiI GAAGAC 2 cut(s) 304, 309
BpmI CTGGAG 1 cut(s) 609
Bpu10I CCTNAGC 1 cut(s) 17
BpuMI CCSGG 2 cut(s) 78, 143
BsaHI GRCGYC 3 cut(s) 309, 435, 635
BsaJI CCNNGG 2 cut(s) 294, 400
BsaWI WCCGGW 2 cut(s) 425, 553
BsaXI ACNNNNNCTCC 6 cut(s) 251, 281, 506, 536, 689, 719
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 364
Bse118I RCCGGY 2 cut(s) 81, 99
Bse1I ACTGG 3 cut(s) 56, 266, 488
Bse21I CCTNAGG 1 cut(s) 359
BseAI TCCGGA 1 cut(s) 425
BseBI CCWGG 2 cut(s) 220, 588
BseDI CCNNGG 2 cut(s) 294, 400
BseGI GGATG 1 cut(s) 757
BseLI CCNNNNNNNGG 2 cut(s) 219, 364
BseMII CTCAG 3 cut(s) 8, 373, 654
BseNI ACTGG 3 cut(s) 56, 266, 488
BseRI GAGGAG 3 cut(s) 173, 215, 350
BseX3I CGGCCG 2 cut(s) 79, 232
BseXI GCAGC 4 cut(s) 43, 655, 658, 661
BsgI GTGCAG 1 cut(s) 50
Bsh1236I CGCG 2 cut(s) 176, 402
Bsh1285I CGRYCG 4 cut(s) 82, 235, 333, 603
BshFI GGCC 7 cut(s) 81, 209, 234, 364, 399, 487, 694
BshNI GGYRCC 1 cut(s) 454
BsiEI CGRYCG 4 cut(s) 82, 235, 333, 603
BsiHKAI GWGCWC 1 cut(s) 141
BsiWI CGTACG 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 219, 364
BsmI GAATGC 1 cut(s) 184
BsnI GGCC 7 cut(s) 81, 209, 234, 364, 399, 487, 694
Bsp1286I GDGCHC 2 cut(s) 141, 422
Bsp13I TCCGGA 1 cut(s) 425
Bsp143I GATC 4 cut(s) 249, 330, 428, 540
Bsp19I CCATGG 1 cut(s) 294
BspANI GGCC 7 cut(s) 81, 209, 234, 364, 399, 487, 694
BspCNI CTCAG 3 cut(s) 9, 372, 655
BspEI TCCGGA 1 cut(s) 425
BspFNI CGCG 2 cut(s) 176, 402
BspLI GGNNCC 4 cut(s) 224, 430, 456, 558
BspMAI CTGCAG 1 cut(s) 463
BspMI ACCTGC 1 cut(s) 466
BspPI GGATC 3 cut(s) 423, 436, 535
BspT107I GGYRCC 1 cut(s) 454
BsrFI RCCGGY 2 cut(s) 81, 99
BsrI ACTGG 3 cut(s) 56, 266, 488
BssAI RCCGGY 2 cut(s) 81, 99
BssECI CCNNGG 2 cut(s) 294, 400
BssMI GATC 4 cut(s) 249, 330, 428, 540
BssNAI GTATAC 1 cut(s) 779
BssNI GRCGYC 3 cut(s) 309, 435, 635
BssT1I CCWWGG 1 cut(s) 294
Bst1107I GTATAC 1 cut(s) 779
Bst2UI CCWGG 2 cut(s) 220, 588
Bst4CI ACNGT 3 cut(s) 385, 410, 764
BstACI GRCGYC 3 cut(s) 309, 435, 635
BstAPI GCANNNNNTGC 1 cut(s) 96
BstC8I GCNNGC 2 cut(s) 101, 459
BstDEI CTNAG 3 cut(s) 17, 359, 663
BstDSI CCRYGG 2 cut(s) 294, 400
BstF5I GGATG 1 cut(s) 757
BstFNI CGCG 2 cut(s) 176, 402
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 3 cut(s) 44, 184, 475
BstKTI GATC 4 cut(s) 252, 333, 431, 543
BstMBI GATC 4 cut(s) 249, 330, 428, 540
BstMCI CGRYCG 4 cut(s) 82, 235, 333, 603
BstMWI GCNNNNNNNGC 9 cut(s) 22, 31, 87, 96, 152, 215, 315, 447, 649
BstNI CCWGG 2 cut(s) 220, 588
BstSCI CCNGG 4 cut(s) 76, 141, 218, 586
BstSFI CTRYAG 1 cut(s) 459
BstUI CGCG 2 cut(s) 176, 402
BstV1I GCAGC 4 cut(s) 43, 655, 658, 661
BstV2I GAAGAC 2 cut(s) 304, 309
BstX2I RGATCY 1 cut(s) 428
BstYI RGATCY 1 cut(s) 428
BstZ17I GTATAC 1 cut(s) 779
BstZI CGGCCG 2 cut(s) 79, 232
Bsu36I CCTNAGG 1 cut(s) 359
BsuI GTATCC 1 cut(s) 398
BsuRI GGCC 7 cut(s) 81, 209, 234, 364, 399, 487, 694
BtgI CCRYGG 2 cut(s) 294, 400
BtsCI GGATG 1 cut(s) 757
BtsI GCAGTG 2 cut(s) 468, 507
BtsIMutI CAGTG 4 cut(s) 259, 468, 495, 507
BveI ACCTGC 1 cut(s) 466
Cac8I GCNNGC 2 cut(s) 101, 459
CfoI GCGC 3 cut(s) 44, 184, 475
Cfr10I RCCGGY 2 cut(s) 81, 99
Cfr13I GGNCC 3 cut(s) 84, 207, 692
Cfr42I CCGCGG 1 cut(s) 403
CpoI CGGWCCG 1 cut(s) 84
CseI GACGC 2 cut(s) 64, 298
Csp6I GTAC 2 cut(s) 237, 286
CspI CGGWCCG 1 cut(s) 84
CviAII CATG 4 cut(s) 295, 703, 748, 757
CviQI GTAC 2 cut(s) 237, 286
DdeI CTNAG 3 cut(s) 17, 359, 663
DpnI GATC 4 cut(s) 251, 332, 430, 542
DpnII GATC 4 cut(s) 249, 330, 428, 540
DrdI GACNNNNNNGTC 1 cut(s) 421
DseDI GACNNNNNNGTC 1 cut(s) 421
EaeI YGGCCR 3 cut(s) 79, 232, 397
EagI CGGCCG 2 cut(s) 79, 232
EciI GGCGGA 3 cut(s) 170, 314, 333
EclXI CGGCCG 2 cut(s) 79, 232
Eco130I CCWWGG 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 422
Eco47I GGWCC 1 cut(s) 84
Eco52I CGGCCG 2 cut(s) 79, 232
Eco57I CTGAAG 1 cut(s) 296
Eco81I CCTNAGG 1 cut(s) 359
EcoRII CCWGG 2 cut(s) 218, 586
EcoT14I CCWWGG 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 422
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 4 cut(s) 298, 706, 751, 760
FaiI YATR 8 cut(s) 215, 296, 704, 713, 749, 758, 779, 793
FatI CATG 4 cut(s) 294, 702, 747, 756
FblI GTMKAC 2 cut(s) 563, 778
Fnu4HI GCNGC 8 cut(s) 32, 35, 177, 180, 400, 644, 647, 650
FokI GGATG 1 cut(s) 764
FriOI GRGCYC 1 cut(s) 422
Fsp4HI GCNGC 8 cut(s) 32, 35, 177, 180, 400, 644, 647, 650
GlaI GCGC 3 cut(s) 43, 183, 474
GluI GCNGC 8 cut(s) 32, 35, 177, 180, 400, 644, 647, 650
GsuI CTGGAG 1 cut(s) 609
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 7 cut(s) 81, 209, 234, 364, 399, 487, 694
HgaI GACGC 2 cut(s) 64, 298
HhaI GCGC 3 cut(s) 44, 184, 475
Hin1I GRCGYC 3 cut(s) 309, 435, 635
Hin1II CATG 4 cut(s) 298, 706, 751, 760
Hin6I GCGC 3 cut(s) 42, 182, 473
HinP1I GCGC 3 cut(s) 42, 182, 473
HincII GTYRAC 1 cut(s) 564
HindII GTYRAC 1 cut(s) 564
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 6 cut(s) 73, 443, 515, 565, 574, 613
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 3 cut(s) 150, 564, 779
Hpy188I TCNGA 4 cut(s) 48, 276, 414, 433
Hpy188III TCNNGA 2 cut(s) 253, 426
Hpy8I GTNNAC 3 cut(s) 150, 564, 779
Hpy99I CGWCG 8 cut(s) 385, 418, 437, 472, 526, 565, 637, 640
HpyAV CCTTC 1 cut(s) 649
HpyCH4III ACNGT 3 cut(s) 385, 410, 764
HpyCH4IV ACGT 2 cut(s) 435, 635
HpyCH4V TGCA 5 cut(s) 31, 114, 461, 643, 715
HpyF10VI GCNNNNNNNGC 9 cut(s) 22, 31, 87, 96, 152, 215, 315, 447, 649
HpyF3I CTNAG 3 cut(s) 17, 359, 663
HpySE526I ACGT 2 cut(s) 435, 635
Hsp92I GRCGYC 3 cut(s) 309, 435, 635
Hsp92II CATG 4 cut(s) 298, 706, 751, 760
HspAI GCGC 3 cut(s) 42, 182, 473
Kpn2I TCCGGA 1 cut(s) 425
KroI GCCGGC 1 cut(s) 99
KroNI GCCGGC 1 cut(s) 101
KspI CCGCGG 1 cut(s) 403
Kzo9I GATC 4 cut(s) 249, 330, 428, 540
LmnI GCTCC 4 cut(s) 136, 228, 337, 556
Lsp1109I GCAGC 4 cut(s) 43, 655, 658, 661
LweI GCATC 1 cut(s) 349
MaeII ACGT 2 cut(s) 435, 635
MaeIII GTNAC 1 cut(s) 582
MalI GATC 4 cut(s) 251, 332, 430, 542
MboI GATC 4 cut(s) 249, 330, 428, 540
MboII GAAGA 5 cut(s) 14, 304, 314, 382, 635
MflI RGATCY 1 cut(s) 428
MhlI GDGCHC 2 cut(s) 141, 422
MlyI GAGTC 5 cut(s) 437, 524, 559, 568, 607
MmeI TCCRAC 2 cut(s) 437, 456
MroI TCCGGA 1 cut(s) 425
MroNI GCCGGC 1 cut(s) 99
MspA1I CMGCKG 2 cut(s) 34, 402
MspR9I CCNGG 4 cut(s) 78, 143, 220, 588
Mva1269I GAATGC 1 cut(s) 184
MvaI CCWGG 2 cut(s) 220, 588
MvnI CGCG 2 cut(s) 176, 402
MwoI GCNNNNNNNGC 9 cut(s) 22, 31, 87, 96, 152, 215, 315, 447, 649
NaeI GCCGGC 1 cut(s) 101
NciI CCSGG 2 cut(s) 78, 143
NcoI CCATGG 1 cut(s) 294
NdeII GATC 4 cut(s) 249, 330, 428, 540
NgoMIV GCCGGC 1 cut(s) 99
NlaIII CATG 4 cut(s) 298, 706, 751, 760
NlaIV GGNNCC 4 cut(s) 224, 430, 456, 558
NmeAIII GCCGAG 1 cut(s) 644
PaqCI CACCTGC 1 cut(s) 466
PcsI WCGNNNNNNNCGW 2 cut(s) 245, 518
PctI GAATGC 1 cut(s) 184
PdiI GCCGGC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 73
Pfl23II CGTACG 1 cut(s) 236
PflFI GACNNNGTC 3 cut(s) 308, 514, 577
PkrI GCNGC 8 cut(s) 33, 36, 178, 181, 401, 645, 648, 651
Ple19I CGATCG 1 cut(s) 333
PleI GAGTC 5 cut(s) 437, 523, 559, 568, 607
PpsI GAGTC 5 cut(s) 437, 523, 559, 568, 607
Psp6I CCWGG 2 cut(s) 218, 586
PspGI CCWGG 2 cut(s) 218, 586
PspLI CGTACG 1 cut(s) 236
PspN4I GGNNCC 4 cut(s) 224, 430, 456, 558
PspPI GGNCC 3 cut(s) 84, 207, 692
PstI CTGCAG 1 cut(s) 463
PsuI RGATCY 1 cut(s) 428
PsyI GACNNNGTC 3 cut(s) 308, 514, 577
PvuI CGATCG 1 cut(s) 333
RsaI GTAC 2 cut(s) 238, 287
RsaNI GTAC 2 cut(s) 237, 286
Rsr2I CGGWCCG 1 cut(s) 84
RsrII CGGWCCG 1 cut(s) 84
SacII CCGCGG 1 cut(s) 403
SalI GTCGAC 1 cut(s) 562
SatI GCNGC 8 cut(s) 32, 35, 177, 180, 400, 644, 647, 650
Sau3AI GATC 4 cut(s) 249, 330, 428, 540
Sau96I GGNCC 3 cut(s) 84, 207, 692
ScaI AGTACT 1 cut(s) 287
SchI GAGTC 5 cut(s) 437, 524, 559, 568, 607
ScrFI CCNGG 4 cut(s) 78, 143, 220, 588
SduI GDGCHC 2 cut(s) 141, 422
SfaNI GCATC 1 cut(s) 349
SfcI CTRYAG 1 cut(s) 459
Sfr303I CCGCGG 1 cut(s) 403
SgrBI CCGCGG 1 cut(s) 403
SinI GGWCC 1 cut(s) 84
SspI AATATT 1 cut(s) 169
StyD4I CCNGG 4 cut(s) 76, 141, 218, 586
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 3 cut(s) 385, 410, 764
TaiI ACGT 2 cut(s) 438, 638
TaqI TCGA 6 cut(s) 71, 329, 333, 524, 563, 599
TaqII GACCGA 1 cut(s) 617
TatI WGTACW 1 cut(s) 285
TauI GCSGC 4 cut(s) 37, 179, 182, 402
TfiI GAWTC 1 cut(s) 73
TscAI CASTG 4 cut(s) 266, 468, 495, 507
TseI GCWGC 4 cut(s) 31, 643, 646, 649
TspDTI ATGAA 4 cut(s) 564, 691, 773, 780
TspGWI ACGGA 2 cut(s) 254, 527
TspRI CASTG 4 cut(s) 266, 468, 495, 507
Tth111I GACNNNGTC 3 cut(s) 308, 514, 577
VpaK11BI GGWCC 1 cut(s) 84
XmiI GTMKAC 2 cut(s) 563, 778
ZraI GACGTC 2 cut(s) 436, 636
ZrmI AGTACT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.