RLG00000014846
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001796
Physical Location & Seq
Forward (+)
58289083 .. 58289946
864 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014846

Sequence Viewer

Length: 864 bp
ATGGATAGCGAATCGGTTCAGCGGCAACAGAGAGAGTTGGATCGGGTTAAGGGGCCGTGGAGCCCCGAAGAGGACGACTTGCTGAGGAAGCTGGTGCAGCGGCACGGCGCTCGGAACTGGACGCTGATAAGCAAGTCGATTCCCGGCCGGTCCGGCAAGTCGTGCCGGCTCCGGTGGTGCAATCAGCTCTCGCCGGAGGTGGAGCACCGGGCCTTCACGGAGGAGGAGGACGAGATAATCGCGGCGGCGCATTCCAAGTACGGCAACAAGTGGGCCACCATAGCCAGGCTCCTCAACGGCCGTACGGACAATGCGATCAAGAACCACTGGAACTCCACTCTGAAGCGGAAGTACTCGTCCATGGCGGAAGACGGCGTCGTCGGCGGCGGAGGCGGTTCGATCGAGGAGCATCATCACCACCACCTCTGGCCGGAGAAGAAATCGGCGACGGTTTCGGTTTCGGGCCGCGGATACAGTCCGACGAGCCCGTCGGGATCGGACGTCAGCGACTCCGGCGTGGTGCCTGCAGTGTCGTCGGCGCAGGTGTTCAGGCCGGTTGCGAGAGCAGTGTTGAGGACGGAGTCGCCGCCGGGCCAGAACGGCATCATCCACAATGAACAGGAGCCGTCGACTCTGCTGACTCTGTCGTTACCTGGAGGCTACTCGACCGAGTTGGCGACTCGCCGAGAGGAAAGAACGACGTCGTTGCAGCAGCAGCAGCAGGAGGAGGCTGAGAATGAGAACAGAACGATGTCGTTTGGGCCGGAGTTCATGTCTTTTATGCAGGAGATGATTAGGAAGGAGGTTAGGAACTACATGGATGATATGAACGGTCAGCACTTTGGTATACCCAAGCTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

288

Amino Acids

32.2

Weight (kDa)

6.61

Isoelectric Point (pI)

63.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 17 - 63 1.5e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 20 - 76 2e-16 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 71 - 113 2e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 119 4e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 532
AasI GACNNNNNNGTC 2 cut(s) 377, 487
AatII GACGTC 2 cut(s) 504, 704
Acc36I ACCTGC 1 cut(s) 532
AccB1I GGYRCC 1 cut(s) 520
AccI GTMKAC 2 cut(s) 629, 847
AccII CGCG 2 cut(s) 242, 468
AclWI GGATC 2 cut(s) 48, 502
AcoI YGGCCR 3 cut(s) 145, 298, 428
AcuI CTGAAG 1 cut(s) 362
AcyI GRCGYC 3 cut(s) 375, 501, 701
AfaI GTAC 3 cut(s) 260, 304, 353
AfiI CCNNNNNNNGG 3 cut(s) 70, 285, 430
AjnI CCWGG 2 cut(s) 284, 652
AluBI AGCT 3 cut(s) 91, 187, 856
AluI AGCT 3 cut(s) 91, 187, 856
Alw21I GWGCWC 1 cut(s) 207
AlwI GGATC 2 cut(s) 48, 502
ApeKI GCWGC 5 cut(s) 97, 709, 712, 715, 718
Asp700I GAANNNNTTC 1 cut(s) 15
AspLEI GCGC 3 cut(s) 110, 250, 541
AspS9I GGNCC 7 cut(s) 53, 150, 210, 273, 463, 592, 761
AsuC2I CCSGG 3 cut(s) 144, 209, 591
AsuHPI GGTGA 1 cut(s) 407
AvaII GGWCC 1 cut(s) 150
BanI GGYRCC 1 cut(s) 520
BanII GRGCYC 2 cut(s) 65, 488
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
BbsI GAAGAC 1 cut(s) 375
Bbv12I GWGCWC 1 cut(s) 207
BbvCI CCTCAGC 1 cut(s) 83
BbvI GCAGC 5 cut(s) 109, 721, 724, 727, 730
BceAI ACGGC 8 cut(s) 40, 121, 277, 285, 313, 388, 610, 616
BcgI CGANNNNNNTGC 6 cut(s) 92, 126, 516, 550, 688, 722
BciT130I CCWGG 2 cut(s) 286, 654
BciVI GTATCC 1 cut(s) 464
BcnI CCSGG 3 cut(s) 144, 209, 591
BfmI CTRYAG 1 cut(s) 525
BfoI RGCGCY 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 532
BfuI GTATCC 1 cut(s) 464
BglI GCCNNNNNGGC 2 cut(s) 153, 600
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 5 cut(s) 144, 209, 286, 591, 654
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 7 cut(s) 53, 150, 210, 273, 463, 592, 761
BmiI GGNNCC 6 cut(s) 54, 62, 170, 290, 522, 624
BmrFI CCNGG 5 cut(s) 144, 209, 286, 591, 654
BmsI GCATC 2 cut(s) 418, 612
BpiI GAAGAC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 675
Bpu10I CCTNAGC 1 cut(s) 83
BpuMI CCSGG 3 cut(s) 144, 209, 591
BsaHI GRCGYC 3 cut(s) 375, 501, 701
BsaJI CCNNGG 3 cut(s) 56, 360, 466
BsaWI WCCGGW 1 cut(s) 171
BsaXI ACNNNNNCTCC 4 cut(s) 317, 347, 758, 788
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 285, 430
Bse118I RCCGGY 3 cut(s) 147, 165, 553
Bse1I ACTGG 2 cut(s) 122, 332
BseBI CCWGG 2 cut(s) 286, 654
BseDI CCNNGG 3 cut(s) 56, 360, 466
BseGI GGATG 2 cut(s) 606, 826
BseLI CCNNNNNNNGG 3 cut(s) 70, 285, 430
BseMII CTCAG 2 cut(s) 74, 723
BseNI ACTGG 2 cut(s) 122, 332
BseRI GAGGAG 5 cut(s) 236, 239, 281, 419, 740
BseX3I CGGCCG 2 cut(s) 145, 298
BseXI GCAGC 5 cut(s) 109, 721, 724, 727, 730
BsgI GTGCAG 1 cut(s) 116
Bsh1236I CGCG 2 cut(s) 242, 468
Bsh1285I CGRYCG 4 cut(s) 148, 301, 402, 669
BshNI GGYRCC 1 cut(s) 520
BsiEI CGRYCG 4 cut(s) 148, 301, 402, 669
BsiHKAI GWGCWC 1 cut(s) 207
BsiWI CGTACG 1 cut(s) 302
BslI CCNNNNNNNGG 3 cut(s) 70, 285, 430
BsmI GAATGC 1 cut(s) 250
Bsp1286I GDGCHC 3 cut(s) 65, 207, 488
Bsp143I GATC 4 cut(s) 40, 315, 399, 494
Bsp19I CCATGG 1 cut(s) 360
BspCNI CTCAG 2 cut(s) 75, 724
BspFNI CGCG 2 cut(s) 242, 468
BspLI GGNNCC 6 cut(s) 54, 62, 170, 290, 522, 624
BspMAI CTGCAG 1 cut(s) 529
BspMI ACCTGC 1 cut(s) 532
BspPI GGATC 2 cut(s) 48, 502
BspT107I GGYRCC 1 cut(s) 520
BsrFI RCCGGY 3 cut(s) 147, 165, 553
BsrI ACTGG 2 cut(s) 122, 332
BssAI RCCGGY 3 cut(s) 147, 165, 553
BssECI CCNNGG 3 cut(s) 56, 360, 466
BssMI GATC 4 cut(s) 40, 315, 399, 494
BssNAI GTATAC 1 cut(s) 848
BssNI GRCGYC 3 cut(s) 375, 501, 701
BssT1I CCWWGG 1 cut(s) 360
Bst1107I GTATAC 1 cut(s) 848
Bst2UI CCWGG 2 cut(s) 286, 654
Bst4CI ACNGT 3 cut(s) 451, 476, 833
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 3 cut(s) 375, 501, 701
BstAPI GCANNNNNTGC 1 cut(s) 162
BstC8I GCNNGC 2 cut(s) 167, 525
BstDEI CTNAG 2 cut(s) 83, 732
BstDSI CCRYGG 3 cut(s) 56, 360, 466
BstF5I GGATG 2 cut(s) 606, 826
BstFNI CGCG 2 cut(s) 242, 468
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 3 cut(s) 110, 250, 541
BstKTI GATC 4 cut(s) 43, 318, 402, 497
BstMBI GATC 4 cut(s) 40, 315, 399, 494
BstMCI CGRYCG 4 cut(s) 148, 301, 402, 669
BstNI CCWGG 2 cut(s) 286, 654
BstSCI CCNGG 5 cut(s) 142, 207, 284, 589, 652
BstSFI CTRYAG 1 cut(s) 525
BstUI CGCG 2 cut(s) 242, 468
BstV1I GCAGC 5 cut(s) 109, 721, 724, 727, 730
BstV2I GAAGAC 1 cut(s) 375
BstZ17I GTATAC 1 cut(s) 848
BstZI CGGCCG 2 cut(s) 145, 298
BsuI GTATCC 1 cut(s) 464
BtgI CCRYGG 3 cut(s) 56, 360, 466
BtsCI GGATG 2 cut(s) 606, 826
BtsI GCAGTG 2 cut(s) 534, 573
BtsIMutI CAGTG 3 cut(s) 325, 534, 573
BveI ACCTGC 1 cut(s) 532
Cac8I GCNNGC 2 cut(s) 167, 525
CfoI GCGC 3 cut(s) 110, 250, 541
Cfr10I RCCGGY 3 cut(s) 147, 165, 553
Cfr13I GGNCC 7 cut(s) 53, 150, 210, 273, 463, 592, 761
Cfr42I CCGCGG 1 cut(s) 469
CpoI CGGWCCG 1 cut(s) 150
CseI GACGC 2 cut(s) 130, 364
Csp6I GTAC 3 cut(s) 259, 303, 352
CspI CGGWCCG 1 cut(s) 150
CviAII CATG 3 cut(s) 361, 772, 817
CviQI GTAC 3 cut(s) 259, 303, 352
DdeI CTNAG 2 cut(s) 83, 732
DpnI GATC 4 cut(s) 42, 317, 401, 496
DpnII GATC 4 cut(s) 40, 315, 399, 494
DrdI GACNNNNNNGTC 2 cut(s) 377, 487
DseDI GACNNNNNNGTC 2 cut(s) 377, 487
EaeI YGGCCR 3 cut(s) 145, 298, 428
EagI CGGCCG 2 cut(s) 145, 298
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
EciI GGCGGA 2 cut(s) 380, 402
EclXI CGGCCG 2 cut(s) 145, 298
Eco130I CCWWGG 1 cut(s) 360
Eco24I GRGCYC 2 cut(s) 65, 488
Eco47I GGWCC 1 cut(s) 150
Eco52I CGGCCG 2 cut(s) 145, 298
Eco57I CTGAAG 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 284, 652
EcoT14I CCWWGG 1 cut(s) 360
EcoT38I GRGCYC 2 cut(s) 65, 488
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 3 cut(s) 364, 775, 820
FaiI YATR 8 cut(s) 281, 362, 773, 782, 818, 827, 848, 862
FatI CATG 3 cut(s) 360, 771, 816
FblI GTMKAC 2 cut(s) 629, 847
FokI GGATG 2 cut(s) 593, 833
FriOI GRGCYC 2 cut(s) 65, 488
GlaI GCGC 3 cut(s) 109, 249, 540
GsuI CTGGAG 1 cut(s) 675
HaeII RGCGCY 1 cut(s) 111
HgaI GACGC 2 cut(s) 130, 364
HhaI GCGC 3 cut(s) 110, 250, 541
Hin1I GRCGYC 3 cut(s) 375, 501, 701
Hin1II CATG 3 cut(s) 364, 775, 820
Hin6I GCGC 3 cut(s) 108, 248, 539
HinP1I GCGC 3 cut(s) 108, 248, 539
HincII GTYRAC 1 cut(s) 630
HindII GTYRAC 1 cut(s) 630
HindIII AAGCTT 1 cut(s) 854
HinfI GANTC 7 cut(s) 11, 139, 509, 581, 631, 640, 679
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 630, 848
Hpy188I TCNGA 4 cut(s) 114, 342, 480, 499
Hpy188III TCNNGA 2 cut(s) 319, 492
Hpy8I GTNNAC 2 cut(s) 630, 848
Hpy99I CGWCG 9 cut(s) 380, 383, 451, 484, 493, 538, 631, 703, 706
HpyAV CCTTC 2 cut(s) 223, 793
HpyCH4III ACNGT 3 cut(s) 451, 476, 833
HpyCH4IV ACGT 2 cut(s) 501, 701
HpyCH4V TGCA 5 cut(s) 97, 180, 527, 709, 784
HpyF3I CTNAG 2 cut(s) 83, 732
HpySE526I ACGT 2 cut(s) 501, 701
Hsp92I GRCGYC 3 cut(s) 375, 501, 701
Hsp92II CATG 3 cut(s) 364, 775, 820
HspAI GCGC 3 cut(s) 108, 248, 539
KroI GCCGGC 1 cut(s) 165
KroNI GCCGGC 1 cut(s) 167
KspI CCGCGG 1 cut(s) 469
Kzo9I GATC 4 cut(s) 40, 315, 399, 494
LmnI GCTCC 6 cut(s) 60, 174, 202, 294, 406, 622
Lsp1109I GCAGC 5 cut(s) 109, 721, 724, 727, 730
LweI GCATC 2 cut(s) 418, 612
MaeII ACGT 2 cut(s) 501, 701
MaeIII GTNAC 1 cut(s) 648
MalI GATC 4 cut(s) 42, 317, 401, 496
MboI GATC 4 cut(s) 40, 315, 399, 494
MboII GAAGA 3 cut(s) 80, 380, 448
MhlI GDGCHC 3 cut(s) 65, 207, 488
MlyI GAGTC 5 cut(s) 503, 590, 625, 634, 673
MmeI TCCRAC 2 cut(s) 18, 503
MroNI GCCGGC 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 1 cut(s) 48
MspA1I CMGCKG 3 cut(s) 22, 100, 468
MspR9I CCNGG 5 cut(s) 144, 209, 286, 591, 654
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 2 cut(s) 286, 654
MvnI CGCG 2 cut(s) 242, 468
NaeI GCCGGC 1 cut(s) 167
NciI CCSGG 3 cut(s) 144, 209, 591
NcoI CCATGG 1 cut(s) 360
NdeII GATC 4 cut(s) 40, 315, 399, 494
NgoMIV GCCGGC 1 cut(s) 165
NlaIII CATG 3 cut(s) 364, 775, 820
NlaIV GGNNCC 6 cut(s) 54, 62, 170, 290, 522, 624
NmeAIII GCCGAG 1 cut(s) 710
PaqCI CACCTGC 1 cut(s) 532
PcsI WCGNNNNNNNCGW 1 cut(s) 311
PctI GAATGC 1 cut(s) 250
PdiI GCCGGC 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 11, 139
Pfl23II CGTACG 1 cut(s) 302
PflFI GACNNNGTC 3 cut(s) 374, 580, 643
Ple19I CGATCG 1 cut(s) 402
PleI GAGTC 5 cut(s) 503, 589, 625, 634, 673
PpsI GAGTC 5 cut(s) 503, 589, 625, 634, 673
Psp6I CCWGG 2 cut(s) 284, 652
PspGI CCWGG 2 cut(s) 284, 652
PspLI CGTACG 1 cut(s) 302
PspN4I GGNNCC 6 cut(s) 54, 62, 170, 290, 522, 624
PspPI GGNCC 7 cut(s) 53, 150, 210, 273, 463, 592, 761
PstI CTGCAG 1 cut(s) 529
PsyI GACNNNGTC 3 cut(s) 374, 580, 643
PvuI CGATCG 1 cut(s) 402
RsaI GTAC 3 cut(s) 260, 304, 353
RsaNI GTAC 3 cut(s) 259, 303, 352
Rsr2I CGGWCCG 1 cut(s) 150
RsrII CGGWCCG 1 cut(s) 150
SacII CCGCGG 1 cut(s) 469
SalI GTCGAC 1 cut(s) 628
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 4 cut(s) 40, 315, 399, 494
Sau96I GGNCC 7 cut(s) 53, 150, 210, 273, 463, 592, 761
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 5 cut(s) 503, 590, 625, 634, 673
ScrFI CCNGG 5 cut(s) 144, 209, 286, 591, 654
SduI GDGCHC 3 cut(s) 65, 207, 488
SfaNI GCATC 2 cut(s) 418, 612
SfcI CTRYAG 1 cut(s) 525
Sfr303I CCGCGG 1 cut(s) 469
SgrBI CCGCGG 1 cut(s) 469
SinI GGWCC 1 cut(s) 150
StyD4I CCNGG 5 cut(s) 142, 207, 284, 589, 652
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 3 cut(s) 451, 476, 833
TaiI ACGT 2 cut(s) 504, 704
TaqI TCGA 5 cut(s) 137, 398, 402, 629, 665
TaqII GACCGA 1 cut(s) 683
TatI WGTACW 1 cut(s) 351
TauI GCSGC 7 cut(s) 25, 103, 245, 248, 387, 468, 589
TfiI GAWTC 2 cut(s) 11, 139
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 3 cut(s) 332, 534, 573
TseI GCWGC 5 cut(s) 97, 709, 712, 715, 718
TspDTI ATGAA 4 cut(s) 630, 760, 842, 849
TspGWI ACGGA 3 cut(s) 233, 320, 593
TspRI CASTG 3 cut(s) 332, 534, 573
Tth111I GACNNNGTC 3 cut(s) 374, 580, 643
VpaK11BI GGWCC 1 cut(s) 150
XmiI GTMKAC 2 cut(s) 629, 847
XmnI GAANNNNTTC 1 cut(s) 15
ZraI GACGTC 2 cut(s) 502, 702
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.