Prupe.8G134900_v2.0.a1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0001796
Physical Location & Seq
Forward (+)
15559337 .. 15560657
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G134900.1

Sequence Viewer

Length: 909 bp
ATGGATCAACGAGAATCGGCAATGGACTCGTCGGCGCAAGCGCAGAGAGAACTGGATCGGGTCAAGGGTCCGTGGAGCCCCGACGAGGACGAGAAGTTACGGCAGCTGGTACAGCACCACGGCGCTCGCAACTGGTCCTTGATAAGCAAGTCGGTACCGGGCCGGTCCGGCAAGTCGTGCCGCCTCCGATGGTGCAACCAGCTCTCGCCGGAGGTGGAGCACCGGGCCTTCACCCCAGAGGAGGACGAGATCATCGCCGGGGCCCACGCCAAGTACGGCAACAAGTGGGCCACCATAGCCAGGCTCCTCAACGGCCGTACGGACAATGCGATCAAGAACCACTGGAACTCGACGCTGAAGCGAAAGTTCTCGGCGATCTCGGGAAACGACGATGGACCAACGATCGACGACAATCACTTTCGGCCGGAGAAGAAAACGGCTACCGCAGCGGTGTCGTTTTCTGGCCTCTGTTACAGCCCTGGGAGCCCCTCCGGATCCGATGTCAGCGACTCGGGCGCGCCCGCCATCTCCTCGTCGCACGTGTTCCGGCCCGTGGCGAGAACCGGTGGAGTATTGACTCGCGAGTCGCCTCCGAGTCAGAACGACAGAAAGAACGAAGCGCACGAGCCGTCGACTCTGCTGACTCTGTCTTTACCAGGAGTCGACGATACGCCGTCGCACGAGTTGCCCGTCCTTGAATCGGCCGCTCGCCGAGTAGAAGGAACGGCGTCGTTGCAGCCCGAGACTAGTAATGCTGGTAATACGCTGTCGTTCGGGACGGAGTTTTTGTCTGTGATGCAGGAGATGATAAGAACGGAAGTGAGGAGTTATATGGAGGGGATGTGCTTACACAGTGAGGGTGTGAGAAATGCTGGGGTTAAGCGCATTGCCATCAGCAAGCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

303

Amino Acids

33.02

Weight (kDa)

6.57

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 583
Acc65I GGTACC 1 cut(s) 154
AccB1I GGYRCC 1 cut(s) 154
AccBSI CCGCTC 1 cut(s) 707
AccI GTMKAC 2 cut(s) 632, 663
AccII CGCG 2 cut(s) 518, 582
AccIII TCCGGA 1 cut(s) 491
AciI CCGC 5 cut(s) 181, 444, 449, 522, 705
AclWI GGATC 4 cut(s) 12, 63, 489, 502
AcoI YGGCCR 3 cut(s) 313, 422, 702
AcuI CTGAAG 1 cut(s) 377
AcvI CACGTG 1 cut(s) 541
AcyI GRCGYC 1 cut(s) 728
AfaI GTAC 4 cut(s) 111, 156, 275, 319
AfiI CCNNNNNNNGG 5 cut(s) 85, 241, 300, 553, 700
AflIII ACRYGT 1 cut(s) 540
AgeI ACCGGT 1 cut(s) 563
AgsI TTSAA 1 cut(s) 698
AhlI ACTAGT 1 cut(s) 746
AjnI CCWGG 3 cut(s) 299, 478, 655
AluBI AGCT 3 cut(s) 106, 202, 901
AluI AGCT 3 cut(s) 106, 202, 901
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 737
AlwI GGATC 4 cut(s) 12, 63, 489, 502
Ama87I CYCGRG 3 cut(s) 379, 511, 740
Aor13HI TCCGGA 1 cut(s) 491
AoxI GGCC 9 cut(s) 160, 225, 261, 288, 313, 422, 463, 548, 702
ApaI GGGCCC 1 cut(s) 265
ApeKI GCWGC 3 cut(s) 103, 446, 736
ArsI GACNNNNNNTTYG 2 cut(s) 769, 801
AscI GGCGCGCC 1 cut(s) 516
AsiGI ACCGGT 1 cut(s) 563
Asp718I GGTACC 1 cut(s) 154
AspLEI GCGC 7 cut(s) 37, 43, 125, 518, 520, 622, 885
AsuC2I CCSGG 3 cut(s) 159, 224, 259
AsuHPI GGTGA 1 cut(s) 223
AvaI CYCGRG 3 cut(s) 379, 511, 740
AvaII GGWCC 4 cut(s) 68, 135, 165, 395
BaeGI GKGCMC 1 cut(s) 265
BamHI GGATCC 1 cut(s) 494
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 3 cut(s) 80, 265, 488
BauI CACGAG 2 cut(s) 623, 680
BbrPI CACGTG 1 cut(s) 541
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 3 cut(s) 115, 458, 748
BccI CCATC 4 cut(s) 183, 386, 533, 899
BceAI ACGGC 9 cut(s) 116, 136, 292, 300, 328, 453, 613, 658, 741
BcgI CGANNNNNNTGC 4 cut(s) 9, 43, 435, 469
BciT130I CCWGG 3 cut(s) 301, 480, 657
BcnI CCSGG 3 cut(s) 159, 224, 259
BcoDI GTCTC 1 cut(s) 737
BcuI ACTAGT 1 cut(s) 746
BfaI CTAG 1 cut(s) 747
BfoI RGCGCY 1 cut(s) 126
BglI GCCNNNNNGGC 1 cut(s) 168
BisI GCNGC 5 cut(s) 104, 181, 447, 705, 737
BlsI GCNGC 5 cut(s) 105, 182, 448, 706, 738
Bme1390I CCNGG 6 cut(s) 159, 224, 259, 301, 480, 657
Bme18I GGWCC 4 cut(s) 68, 135, 165, 395
BmeT110I CYCGRG 3 cut(s) 379, 511, 740
BmiI GGNNCC 8 cut(s) 69, 77, 156, 262, 263, 305, 485, 496
BmrFI CCNGG 6 cut(s) 159, 224, 259, 301, 480, 657
BmsI GCATC 1 cut(s) 786
BpuMI CCSGG 3 cut(s) 159, 224, 259
BsaAI YACGTR 1 cut(s) 541
BsaHI GRCGYC 1 cut(s) 728
BsaJI CCNNGG 6 cut(s) 71, 118, 258, 478, 479, 552
BsaWI WCCGGW 2 cut(s) 491, 563
BsaXI ACNNNNNCTCC 4 cut(s) 773, 803, 827, 857
Bsc4I CCNNNNNNNGG 5 cut(s) 85, 241, 300, 553, 700
Bse118I RCCGGY 2 cut(s) 162, 563
Bse1I ACTGG 3 cut(s) 57, 137, 347
Bse3DI GCAATG 2 cut(s) 27, 885
BseAI TCCGGA 1 cut(s) 491
BseBI CCWGG 3 cut(s) 301, 480, 657
BseDI CCNNGG 6 cut(s) 71, 118, 258, 478, 479, 552
BseGI GGATG 1 cut(s) 846
BseLI CCNNNNNNNGG 5 cut(s) 85, 241, 300, 553, 700
BseMI GCAATG 2 cut(s) 27, 885
BseNI ACTGG 3 cut(s) 57, 137, 347
BsePI GCGCGC 1 cut(s) 516
BseRI GAGGAG 4 cut(s) 254, 296, 520, 838
BseSI GKGCMC 1 cut(s) 265
BseX3I CGGCCG 3 cut(s) 313, 422, 702
BseXI GCAGC 3 cut(s) 115, 458, 748
BseYI CCCAGC 1 cut(s) 872
Bsh1236I CGCG 2 cut(s) 518, 582
Bsh1285I CGRYCG 4 cut(s) 316, 405, 425, 705
BshFI GGCC 9 cut(s) 162, 227, 263, 290, 315, 424, 465, 550, 704
BshNI GGYRCC 1 cut(s) 154
BshTI ACCGGT 1 cut(s) 563
BsiEI CGRYCG 4 cut(s) 316, 405, 425, 705
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 3 cut(s) 379, 511, 740
BsiWI CGTACG 1 cut(s) 317
BslFI GGGAC 1 cut(s) 790
BslI CCNNNNNNNGG 5 cut(s) 85, 241, 300, 553, 700
BsmAI GTCTC 1 cut(s) 737
BsmFI GGGAC 1 cut(s) 790
BsnI GGCC 9 cut(s) 162, 227, 263, 290, 315, 424, 465, 550, 704
BsoBI CYCGRG 3 cut(s) 379, 511, 740
Bsp120I GGGCCC 1 cut(s) 261
Bsp1286I GDGCHC 4 cut(s) 80, 222, 265, 488
Bsp13I TCCGGA 1 cut(s) 491
Bsp143I GATC 7 cut(s) 4, 55, 249, 330, 375, 402, 494
Bsp68I TCGCGA 1 cut(s) 582
BspACI CCGC 5 cut(s) 181, 444, 449, 522, 705
BspANI GGCC 9 cut(s) 162, 227, 263, 290, 315, 424, 465, 550, 704
BspEI TCCGGA 1 cut(s) 491
BspFNI CGCG 2 cut(s) 518, 582
BspLI GGNNCC 8 cut(s) 69, 77, 156, 262, 263, 305, 485, 496
BspPI GGATC 4 cut(s) 12, 63, 489, 502
BspT107I GGYRCC 1 cut(s) 154
BsrBI CCGCTC 1 cut(s) 707
BsrDI GCAATG 2 cut(s) 27, 885
BsrFI RCCGGY 2 cut(s) 162, 563
BsrI ACTGG 3 cut(s) 57, 137, 347
BssAI RCCGGY 2 cut(s) 162, 563
BssECI CCNNGG 6 cut(s) 71, 118, 258, 478, 479, 552
BssHII GCGCGC 1 cut(s) 516
BssMI GATC 7 cut(s) 4, 55, 249, 330, 375, 402, 494
BssNI GRCGYC 1 cut(s) 728
BssSI CACGAG 2 cut(s) 623, 680
Bst2BI CACGAG 2 cut(s) 623, 680
Bst2UI CCWGG 3 cut(s) 301, 480, 657
Bst4CI ACNGT 1 cut(s) 854
BstACI GRCGYC 1 cut(s) 728
BstAPI GCANNNNNTGC 2 cut(s) 177, 685
BstBAI YACGTR 1 cut(s) 541
BstC8I GCNNGC 6 cut(s) 39, 127, 518, 522, 709, 899
BstDSI CCRYGG 3 cut(s) 71, 118, 552
BstF5I GGATG 1 cut(s) 846
BstFNI CGCG 2 cut(s) 518, 582
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 7 cut(s) 37, 43, 125, 518, 520, 622, 885
BstKTI GATC 7 cut(s) 7, 58, 252, 333, 378, 405, 497
BstMAI GTCTC 1 cut(s) 737
BstMBI GATC 7 cut(s) 4, 55, 249, 330, 375, 402, 494
BstMCI CGRYCG 4 cut(s) 316, 405, 425, 705
BstMWI GCNNNNNNNGC 8 cut(s) 112, 168, 177, 296, 446, 483, 513, 685
BstNI CCWGG 3 cut(s) 301, 480, 657
BstSCI CCNGG 6 cut(s) 157, 222, 257, 299, 478, 655
BstSLI GKGCMC 1 cut(s) 265
BstUI CGCG 2 cut(s) 518, 582
BstV1I GCAGC 3 cut(s) 115, 458, 748
BstX2I RGATCY 1 cut(s) 494
BstYI RGATCY 1 cut(s) 494
BstZI CGGCCG 3 cut(s) 313, 422, 702
BsuRI GGCC 9 cut(s) 162, 227, 263, 290, 315, 424, 465, 550, 704
BtgI CCRYGG 3 cut(s) 71, 118, 552
BtgZI GCGATG 1 cut(s) 238
BtsCI GGATG 1 cut(s) 846
BtsIMutI CAGTG 2 cut(s) 340, 859
BtuMI TCGCGA 1 cut(s) 582
Cac8I GCNNGC 6 cut(s) 39, 127, 518, 522, 709, 899
CfoI GCGC 7 cut(s) 37, 43, 125, 518, 520, 622, 885
Cfr10I RCCGGY 2 cut(s) 162, 563
CpoI CGGWCCG 1 cut(s) 165
CseI GACGC 2 cut(s) 361, 717
Csp6I GTAC 4 cut(s) 110, 155, 274, 318
CspAI ACCGGT 1 cut(s) 563
CspI CGGWCCG 1 cut(s) 165
CviQI GTAC 4 cut(s) 110, 155, 274, 318
DpnI GATC 7 cut(s) 6, 57, 251, 332, 377, 404, 496
DpnII GATC 7 cut(s) 4, 55, 249, 330, 375, 402, 494
DrdI GACNNNNNNGTC 1 cut(s) 583
DseDI GACNNNNNNGTC 1 cut(s) 583
EaeI YGGCCR 3 cut(s) 313, 422, 702
EagI CGGCCG 3 cut(s) 313, 422, 702
EclXI CGGCCG 3 cut(s) 313, 422, 702
Eco24I GRGCYC 3 cut(s) 80, 265, 488
Eco47I GGWCC 4 cut(s) 68, 135, 165, 395
Eco52I CGGCCG 3 cut(s) 313, 422, 702
Eco57I CTGAAG 1 cut(s) 377
Eco72I CACGTG 1 cut(s) 541
Eco88I CYCGRG 3 cut(s) 379, 511, 740
EcoO109I RGGNCCY 1 cut(s) 261
EcoRII CCWGG 3 cut(s) 299, 478, 655
EcoT38I GRGCYC 3 cut(s) 80, 265, 488
FaiI YATR 3 cut(s) 296, 831, 833
FaqI GGGAC 1 cut(s) 790
FauI CCCGC 1 cut(s) 529
FblI GTMKAC 2 cut(s) 632, 663
Fnu4HI GCNGC 5 cut(s) 104, 181, 447, 705, 737
FokI GGATG 1 cut(s) 853
FriOI GRGCYC 3 cut(s) 80, 265, 488
Fsp4HI GCNGC 5 cut(s) 104, 181, 447, 705, 737
FspBI CTAG 1 cut(s) 747
GlaI GCGC 7 cut(s) 36, 42, 124, 517, 519, 621, 884
GluI GCNGC 5 cut(s) 104, 181, 447, 705, 737
GsaI CCCAGC 1 cut(s) 876
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 9 cut(s) 162, 227, 263, 290, 315, 424, 465, 550, 704
HgaI GACGC 2 cut(s) 361, 717
HhaI GCGC 7 cut(s) 37, 43, 125, 518, 520, 622, 885
Hin1I GRCGYC 1 cut(s) 728
Hin6I GCGC 7 cut(s) 35, 41, 123, 516, 518, 620, 883
HinP1I GCGC 7 cut(s) 35, 41, 123, 516, 518, 620, 883
HincII GTYRAC 2 cut(s) 633, 664
HindII GTYRAC 2 cut(s) 633, 664
HindIII AAGCTT 1 cut(s) 899
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 2 cut(s) 633, 664
Hpy188I TCNGA 4 cut(s) 188, 499, 594, 600
Hpy188III TCNNGA 5 cut(s) 334, 381, 492, 581, 775
Hpy8I GTNNAC 2 cut(s) 633, 664
HpyAV CCTTC 2 cut(s) 238, 713
HpyCH4III ACNGT 1 cut(s) 854
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 3 cut(s) 195, 736, 799
HpyF10VI GCNNNNNNNGC 8 cut(s) 112, 168, 177, 296, 446, 483, 513, 685
HpySE526I ACGT 1 cut(s) 540
Hsp92I GRCGYC 1 cut(s) 728
HspAI GCGC 7 cut(s) 35, 41, 123, 516, 518, 620, 883
Kpn2I TCCGGA 1 cut(s) 491
KpnI GGTACC 1 cut(s) 158
Kzo9I GATC 7 cut(s) 4, 55, 249, 330, 375, 402, 494
LmnI GCTCC 4 cut(s) 75, 217, 309, 483
Lsp1109I GCAGC 3 cut(s) 115, 458, 748
LweI GCATC 1 cut(s) 786
MaeI CTAG 1 cut(s) 747
MaeII ACGT 1 cut(s) 540
MaeIII GTNAC 2 cut(s) 96, 470
MalI GATC 7 cut(s) 6, 57, 251, 332, 377, 404, 496
MbiI CCGCTC 1 cut(s) 707
MboI GATC 7 cut(s) 4, 55, 249, 330, 375, 402, 494
MboII GAAGA 1 cut(s) 442
MflI RGATCY 1 cut(s) 494
MhlI GDGCHC 4 cut(s) 80, 222, 265, 488
MlyI GAGTC 8 cut(s) 20, 503, 571, 593, 604, 628, 637, 669
MroI TCCGGA 1 cut(s) 491
MseI TTAA 2 cut(s) 879, 907
MspA1I CMGCKG 2 cut(s) 106, 449
MspR9I CCNGG 6 cut(s) 159, 224, 259, 301, 480, 657
MvaI CCWGG 3 cut(s) 301, 480, 657
MvnI CGCG 2 cut(s) 518, 582
MwoI GCNNNNNNNGC 8 cut(s) 112, 168, 177, 296, 446, 483, 513, 685
NciI CCSGG 3 cut(s) 159, 224, 259
NdeII GATC 7 cut(s) 4, 55, 249, 330, 375, 402, 494
NlaIV GGNNCC 8 cut(s) 69, 77, 156, 262, 263, 305, 485, 496
NmeAIII GCCGAG 2 cut(s) 350, 737
NruI TCGCGA 1 cut(s) 582
PalAI GGCGCGCC 1 cut(s) 516
PasI CCCWGGG 1 cut(s) 479
PauI GCGCGC 1 cut(s) 516
PcsI WCGNNNNNNNCGW 3 cut(s) 326, 621, 687
PfeI GAWTC 2 cut(s) 14, 698
Pfl23II CGTACG 1 cut(s) 317
PflFI GACNNNGTC 1 cut(s) 646
PinAI ACCGGT 1 cut(s) 563
PkrI GCNGC 5 cut(s) 105, 182, 448, 706, 738
Ple19I CGATCG 1 cut(s) 405
PleI GAGTC 8 cut(s) 20, 503, 571, 592, 603, 628, 637, 668
PmaCI CACGTG 1 cut(s) 541
PmlI CACGTG 1 cut(s) 541
PpsI GAGTC 8 cut(s) 20, 503, 571, 592, 603, 628, 637, 668
Ppu21I YACGTR 1 cut(s) 541
Psp6I CCWGG 3 cut(s) 299, 478, 655
PspCI CACGTG 1 cut(s) 541
PspFI CCCAGC 1 cut(s) 872
PspGI CCWGG 3 cut(s) 299, 478, 655
PspLI CGTACG 1 cut(s) 317
PspN4I GGNNCC 8 cut(s) 69, 77, 156, 262, 263, 305, 485, 496
PspOMI GGGCCC 1 cut(s) 261
PsuI RGATCY 1 cut(s) 494
PsyI GACNNNGTC 1 cut(s) 646
PteI GCGCGC 1 cut(s) 516
PvuI CGATCG 1 cut(s) 405
PvuII CAGCTG 1 cut(s) 106
RruI TCGCGA 1 cut(s) 582
RsaI GTAC 4 cut(s) 111, 156, 275, 319
RsaNI GTAC 4 cut(s) 110, 155, 274, 318
Rsr2I CGGWCCG 1 cut(s) 165
RsrII CGGWCCG 1 cut(s) 165
SalI GTCGAC 2 cut(s) 631, 662
SaqAI TTAA 2 cut(s) 879, 907
SatI GCNGC 5 cut(s) 104, 181, 447, 705, 737
Sau3AI GATC 7 cut(s) 4, 55, 249, 330, 375, 402, 494
SchI GAGTC 8 cut(s) 20, 503, 571, 593, 604, 628, 637, 669
ScrFI CCNGG 6 cut(s) 159, 224, 259, 301, 480, 657
SduI GDGCHC 4 cut(s) 80, 222, 265, 488
SetI ASST 5 cut(s) 108, 204, 216, 543, 903
SfaNI GCATC 1 cut(s) 786
SgsI GGCGCGCC 1 cut(s) 516
SinI GGWCC 4 cut(s) 68, 135, 165, 395
SpeI ACTAGT 1 cut(s) 746
SsiI CCGC 5 cut(s) 181, 444, 449, 522, 705
SspMI CTAG 1 cut(s) 747
StyD4I CCNGG 6 cut(s) 157, 222, 257, 299, 478, 655
TaaI ACNGT 1 cut(s) 854
TaiI ACGT 1 cut(s) 543
TaqI TCGA 4 cut(s) 350, 405, 632, 663
TauI GCSGC 2 cut(s) 183, 707
TfiI GAWTC 2 cut(s) 14, 698
Tru1I TTAA 2 cut(s) 879, 907
Tru9I TTAA 2 cut(s) 879, 907
TscAI CASTG 2 cut(s) 347, 859
TseI GCWGC 3 cut(s) 103, 446, 736
TspGWI ACGGA 4 cut(s) 60, 335, 794, 830
TspRI CASTG 2 cut(s) 347, 859
Tth111I GACNNNGTC 1 cut(s) 646
VpaK11BI GGWCC 4 cut(s) 68, 135, 165, 395
XmiI GTMKAC 2 cut(s) 632, 663
XspI CTAG 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.