FvH4_2g05210
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001796
Physical Location & Seq
Reverse (-)
4308838 .. 4309653
816 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05210.t1

Sequence Viewer

Length: 816 bp
ATGGATTGCGAATCGGTTCAGCAGAGGGAGTTGGATCGGGTCAAGGGGCCGTGGAGCCCCGAAGAGGACGACCTGCTGAGGAAGCTGGTGCAGCGGCACGGCGCTCGGAACTGGACTCTGATAAGCAAGTCGATCCCGGGAAGGTCCGGGAAGTCGTGCCGGCTCCGGTGGTGCAATCAGCTCTCACCGGAGGTGGAGCACCGGGCGTTCACGGCGGAGGAGGACGAGATCATCGCGGCGGCGCATTCGAAATACGGCAACAAGTGGGCCACCATAGCCAGGCTCCTCAACGGCCGGACGGACAATGCGATCAAGAACCACTGGAACTCTACTCTGAAGCGGAAGTACTCGTCCATGGCGGAAGACGGCGGCGGCGGCGGCGGCGTGGAGGAGAATCAGTACCACATCCTCAGGCCGGAGAAGAAATCGGCGACGGCTTCGGTTTCGGGCCGCGGTTACAGTCCGACGAGCCCATCCGGATCCGACGTCAGCGACTCCGGCGTGGCGCCGGCTGTTACGTCGGCGCAGGTGTTCTGGCCGATGGCGAGAGCAGTGATGAGAACCGAGTCGCCGCCGCCGAGGAATGAACCGGAGCCGTCGACTCTTCTGACTCTGTCCTTACCTGGAGGTTCCGAGGTGGCGACTCGCCGAGAAGAGAAAACGACGTCGTTATGTTTAACGACGTCGTTAGATGAGAATCAGAACAGAACGATGTCGTTTGGGCCGGAGTTCATGTCTTTGATGCAGGAGATGGTTAGGAAGGAGGTTAGGAACTACATGGACGATAAGCACCTTGGTATACCCAAGCTCTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

272

Amino Acids

30.13

Weight (kDa)

8.31

Isoelectric Point (pI)

56.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 61 1.4e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 75 4.7e-17 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 111 2.6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 117 8.2e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 517
AatII GACGTC 3 cut(s) 489, 668, 686
Acc36I ACCTGC 2 cut(s) 81, 517
AccB1I GGYRCC 1 cut(s) 505
AccI GTMKAC 2 cut(s) 599, 799
AccII CGCG 2 cut(s) 236, 453
AccIII TCCGGA 1 cut(s) 476
AclWI GGATC 4 cut(s) 42, 127, 474, 487
AcoI YGGCCR 2 cut(s) 292, 536
AcuI CTGAAG 1 cut(s) 356
AcyI GRCGYC 4 cut(s) 486, 506, 665, 683
AfaI GTAC 2 cut(s) 347, 401
AfiI CCNNNNNNNGG 3 cut(s) 64, 279, 415
AjnI CCWGG 2 cut(s) 278, 622
AluBI AGCT 3 cut(s) 85, 181, 808
AluI AGCT 3 cut(s) 85, 181, 808
Alw21I GWGCWC 1 cut(s) 201
AlwI GGATC 4 cut(s) 42, 127, 474, 487
Ama87I CYCGRG 1 cut(s) 136
Aor13HI TCCGGA 1 cut(s) 476
AoxI GGCC 7 cut(s) 47, 267, 292, 413, 448, 536, 722
ApeKI GCWGC 1 cut(s) 91
Asp700I GAANNNNTTC 1 cut(s) 15
AspLEI GCGC 4 cut(s) 104, 244, 508, 526
AspS9I GGNCC 5 cut(s) 47, 144, 267, 448, 722
AsuC2I CCSGG 4 cut(s) 137, 138, 148, 203
AsuHPI GGTGA 1 cut(s) 177
AsuII TTCGAA 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 136
AvaII GGWCC 1 cut(s) 144
AxyI CCTNAGG 1 cut(s) 410
BamHI GGATCC 1 cut(s) 479
BanI GGYRCC 1 cut(s) 505
BanII GRGCYC 2 cut(s) 59, 473
BarI GAAGNNNNNNTAC 2 cut(s) 329, 361
BbsI GAAGAC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 201
BbvCI CCTCAGC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 103
BccI CCATC 3 cut(s) 481, 535, 745
BceAI ACGGC 8 cut(s) 34, 115, 228, 271, 307, 382, 450, 580
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 2 cut(s) 280, 624
BcnI CCSGG 4 cut(s) 137, 138, 148, 203
BfoI RGCGCY 2 cut(s) 105, 509
BfuAI ACCTGC 2 cut(s) 81, 517
BmcAI AGTACT 1 cut(s) 347
Bme1390I CCNGG 6 cut(s) 137, 138, 148, 203, 280, 624
Bme18I GGWCC 1 cut(s) 144
BmeT110I CYCGRG 1 cut(s) 136
BmgT120I GGNCC 5 cut(s) 47, 144, 267, 448, 722
BmiI GGNNCC 8 cut(s) 48, 56, 164, 284, 481, 507, 594, 631
BmrFI CCNGG 6 cut(s) 137, 138, 148, 203, 280, 624
BmsI GCATC 1 cut(s) 732
BpiI GAAGAC 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 645
Bpu10I CCTNAGC 1 cut(s) 77
Bpu14I TTCGAA 1 cut(s) 248
BpuMI CCSGG 4 cut(s) 137, 138, 148, 203
BsaBI GATNNNNATC 1 cut(s) 696
BsaHI GRCGYC 4 cut(s) 486, 506, 665, 683
BsaJI CCNNGG 7 cut(s) 50, 136, 354, 451, 578, 633, 793
BsaWI WCCGGW 4 cut(s) 165, 187, 476, 589
BsaXI ACNNNNNCTCC 4 cut(s) 383, 413, 719, 749
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 279, 415
Bse118I RCCGGY 2 cut(s) 159, 508
Bse1I ACTGG 2 cut(s) 116, 326
Bse21I CCTNAGG 1 cut(s) 410
Bse8I GATNNNNATC 1 cut(s) 696
BseAI TCCGGA 1 cut(s) 476
BseBI CCWGG 2 cut(s) 280, 624
BseDI CCNNGG 7 cut(s) 50, 136, 354, 451, 578, 633, 793
BseGI GGATG 2 cut(s) 405, 473
BseJI GATNNNNATC 1 cut(s) 696
BseLI CCNNNNNNNGG 3 cut(s) 64, 279, 415
BseMII CTCAG 2 cut(s) 68, 424
BseNI ACTGG 2 cut(s) 116, 326
BseRI GAGGAG 3 cut(s) 233, 275, 404
BseX3I CGGCCG 1 cut(s) 292
BseXI GCAGC 1 cut(s) 103
BsgI GTGCAG 1 cut(s) 110
Bsh1236I CGCG 2 cut(s) 236, 453
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 7 cut(s) 49, 269, 294, 415, 450, 538, 724
BshNI GGYRCC 1 cut(s) 505
BsiEI CGRYCG 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 136
BslI CCNNNNNNNGG 3 cut(s) 64, 279, 415
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 7 cut(s) 49, 269, 294, 415, 450, 538, 724
BsoBI CYCGRG 1 cut(s) 136
Bsp119I TTCGAA 1 cut(s) 248
Bsp1286I GDGCHC 3 cut(s) 59, 201, 473
Bsp13I TCCGGA 1 cut(s) 476
Bsp143I GATC 5 cut(s) 34, 132, 228, 309, 479
Bsp19I CCATGG 1 cut(s) 354
BspANI GGCC 7 cut(s) 49, 269, 294, 415, 450, 538, 724
BspCNI CTCAG 2 cut(s) 69, 423
BspEI TCCGGA 1 cut(s) 476
BspFNI CGCG 2 cut(s) 236, 453
BspLI GGNNCC 8 cut(s) 48, 56, 164, 284, 481, 507, 594, 631
BspMI ACCTGC 2 cut(s) 81, 517
BspPI GGATC 4 cut(s) 42, 127, 474, 487
BspT104I TTCGAA 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 505
BsrFI RCCGGY 2 cut(s) 159, 508
BsrI ACTGG 2 cut(s) 116, 326
BssAI RCCGGY 2 cut(s) 159, 508
BssECI CCNNGG 7 cut(s) 50, 136, 354, 451, 578, 633, 793
BssMI GATC 5 cut(s) 34, 132, 228, 309, 479
BssNAI GTATAC 1 cut(s) 800
BssNI GRCGYC 4 cut(s) 486, 506, 665, 683
BssT1I CCWWGG 2 cut(s) 354, 793
Bst1107I GTATAC 1 cut(s) 800
Bst2UI CCWGG 2 cut(s) 280, 624
Bst4CI ACNGT 1 cut(s) 461
Bst6I CTCTTC 3 cut(s) 57, 609, 648
BstACI GRCGYC 4 cut(s) 486, 506, 665, 683
BstBI TTCGAA 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 161, 510
BstDEI CTNAG 2 cut(s) 77, 410
BstDSI CCRYGG 3 cut(s) 50, 354, 451
BstF5I GGATG 2 cut(s) 405, 473
BstFNI CGCG 2 cut(s) 236, 453
BstH2I RGCGCY 2 cut(s) 105, 509
BstHHI GCGC 4 cut(s) 104, 244, 508, 526
BstKTI GATC 5 cut(s) 37, 135, 231, 312, 482
BstMBI GATC 5 cut(s) 34, 132, 228, 309, 479
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 8 cut(s) 82, 91, 212, 275, 375, 378, 381, 498
BstNI CCWGG 2 cut(s) 280, 624
BstSCI CCNGG 6 cut(s) 135, 136, 146, 201, 278, 622
BstUI CGCG 2 cut(s) 236, 453
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 479
BstYI RGATCY 1 cut(s) 479
BstZ17I GTATAC 1 cut(s) 800
BstZI CGGCCG 1 cut(s) 292
Bsu36I CCTNAGG 1 cut(s) 410
BsuRI GGCC 7 cut(s) 49, 269, 294, 415, 450, 538, 724
BtgI CCRYGG 3 cut(s) 50, 354, 451
BtgZI GCGATG 1 cut(s) 217
BtsCI GGATG 2 cut(s) 405, 473
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 2 cut(s) 319, 558
BveI ACCTGC 2 cut(s) 81, 517
Cac8I GCNNGC 2 cut(s) 161, 510
CfoI GCGC 4 cut(s) 104, 244, 508, 526
Cfr10I RCCGGY 2 cut(s) 159, 508
Cfr13I GGNCC 5 cut(s) 47, 144, 267, 448, 722
Cfr42I CCGCGG 1 cut(s) 454
Cfr9I CCCGGG 1 cut(s) 136
Csp6I GTAC 2 cut(s) 346, 400
CviAII CATG 3 cut(s) 355, 733, 778
CviQI GTAC 2 cut(s) 346, 400
DdeI CTNAG 2 cut(s) 77, 410
DinI GGCGCC 1 cut(s) 507
DpnI GATC 5 cut(s) 36, 134, 230, 311, 481
DpnII GATC 5 cut(s) 34, 132, 228, 309, 479
EaeI YGGCCR 2 cut(s) 292, 536
EagI CGGCCG 1 cut(s) 292
Eam1104I CTCTTC 3 cut(s) 57, 609, 648
EarI CTCTTC 3 cut(s) 57, 609, 648
EciI GGCGGA 2 cut(s) 230, 374
EclXI CGGCCG 1 cut(s) 292
Eco130I CCWWGG 2 cut(s) 354, 793
Eco24I GRGCYC 2 cut(s) 59, 473
Eco47I GGWCC 1 cut(s) 144
Eco52I CGGCCG 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 356
Eco81I CCTNAGG 1 cut(s) 410
Eco88I CYCGRG 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 278, 622
EcoT14I CCWWGG 2 cut(s) 354, 793
EcoT38I GRGCYC 2 cut(s) 59, 473
EgeI GGCGCC 1 cut(s) 507
EheI GGCGCC 1 cut(s) 507
ErhI CCWWGG 2 cut(s) 354, 793
FaeI CATG 3 cut(s) 358, 736, 781
FaiI YATR 6 cut(s) 275, 356, 673, 734, 779, 800
FatI CATG 3 cut(s) 354, 732, 777
FblI GTMKAC 2 cut(s) 599, 799
FokI GGATG 2 cut(s) 392, 460
FriOI GRGCYC 2 cut(s) 59, 473
GlaI GCGC 4 cut(s) 103, 243, 507, 525
GsuI CTGGAG 1 cut(s) 645
HaeII RGCGCY 2 cut(s) 105, 509
HaeIII GGCC 7 cut(s) 49, 269, 294, 415, 450, 538, 724
HhaI GCGC 4 cut(s) 104, 244, 508, 526
Hin1I GRCGYC 4 cut(s) 486, 506, 665, 683
Hin1II CATG 3 cut(s) 358, 736, 781
Hin6I GCGC 4 cut(s) 102, 242, 506, 524
HinP1I GCGC 4 cut(s) 102, 242, 506, 524
HincII GTYRAC 1 cut(s) 600
HindII GTYRAC 1 cut(s) 600
HinfI GANTC 9 cut(s) 11, 115, 394, 494, 566, 601, 610, 643, 697
HphI GGTGA 1 cut(s) 177
Hpy166II GTNNAC 3 cut(s) 210, 600, 800
Hpy188I TCNGA 8 cut(s) 108, 120, 336, 465, 484, 609, 634, 702
Hpy188III TCNNGA 2 cut(s) 313, 477
Hpy8I GTNNAC 3 cut(s) 210, 600, 800
Hpy99I CGWCG 9 cut(s) 436, 469, 488, 523, 601, 667, 670, 685, 688
HpyAV CCTTC 2 cut(s) 135, 754
HpyCH4III ACNGT 1 cut(s) 461
HpyCH4IV ACGT 4 cut(s) 486, 518, 665, 683
HpyCH4V TGCA 3 cut(s) 91, 174, 745
HpyF10VI GCNNNNNNNGC 8 cut(s) 82, 91, 212, 275, 375, 378, 381, 498
HpyF3I CTNAG 2 cut(s) 77, 410
HpySE526I ACGT 4 cut(s) 486, 518, 665, 683
Hsp92I GRCGYC 4 cut(s) 486, 506, 665, 683
Hsp92II CATG 3 cut(s) 358, 736, 781
HspAI GCGC 4 cut(s) 102, 242, 506, 524
KasI GGCGCC 1 cut(s) 505
Kpn2I TCCGGA 1 cut(s) 476
KroI GCCGGC 2 cut(s) 159, 508
KroNI GCCGGC 2 cut(s) 161, 510
KspI CCGCGG 1 cut(s) 454
Kzo9I GATC 5 cut(s) 34, 132, 228, 309, 479
LmnI GCTCC 5 cut(s) 54, 168, 196, 288, 592
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 1 cut(s) 732
MaeII ACGT 4 cut(s) 486, 518, 665, 683
MaeIII GTNAC 2 cut(s) 455, 514
MalI GATC 5 cut(s) 36, 134, 230, 311, 481
MboI GATC 5 cut(s) 34, 132, 228, 309, 479
MboII GAAGA 5 cut(s) 74, 374, 433, 596, 665
MflI RGATCY 1 cut(s) 479
MhlI GDGCHC 3 cut(s) 59, 201, 473
Mly113I GGCGCC 1 cut(s) 506
MlyI GAGTC 6 cut(s) 109, 488, 575, 595, 604, 637
MmeI TCCRAC 3 cut(s) 12, 488, 507
MroI TCCGGA 1 cut(s) 476
MroNI GCCGGC 2 cut(s) 159, 508
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 1 cut(s) 677
MspA1I CMGCKG 2 cut(s) 94, 453
MspR9I CCNGG 6 cut(s) 137, 138, 148, 203, 280, 624
Mva1269I GAATGC 1 cut(s) 244
MvaI CCWGG 2 cut(s) 280, 624
MvnI CGCG 2 cut(s) 236, 453
MwoI GCNNNNNNNGC 8 cut(s) 82, 91, 212, 275, 375, 378, 381, 498
NaeI GCCGGC 2 cut(s) 161, 510
NarI GGCGCC 1 cut(s) 506
NciI CCSGG 4 cut(s) 137, 138, 148, 203
NcoI CCATGG 1 cut(s) 354
NdeII GATC 5 cut(s) 34, 132, 228, 309, 479
NgoMIV GCCGGC 2 cut(s) 159, 508
NlaIII CATG 3 cut(s) 358, 736, 781
NlaIV GGNNCC 8 cut(s) 48, 56, 164, 284, 481, 507, 594, 631
NmeAIII GCCGAG 2 cut(s) 603, 674
NspV TTCGAA 1 cut(s) 248
PaqCI CACCTGC 1 cut(s) 517
PcsI WCGNNNNNNNCGW 2 cut(s) 305, 575
PctI GAATGC 1 cut(s) 244
PdiI GCCGGC 2 cut(s) 161, 510
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 3 cut(s) 11, 394, 697
PflFI GACNNNGTC 1 cut(s) 613
PfoI TCCNGGA 1 cut(s) 146
PleI GAGTC 6 cut(s) 109, 488, 574, 595, 604, 637
PluTI GGCGCC 1 cut(s) 509
PpsI GAGTC 6 cut(s) 109, 488, 574, 595, 604, 637
Psp6I CCWGG 2 cut(s) 278, 622
PspGI CCWGG 2 cut(s) 278, 622
PspN4I GGNNCC 8 cut(s) 48, 56, 164, 284, 481, 507, 594, 631
PspPI GGNCC 5 cut(s) 47, 144, 267, 448, 722
PsuI RGATCY 1 cut(s) 479
PsyI GACNNNGTC 1 cut(s) 613
RsaI GTAC 2 cut(s) 347, 401
RsaNI GTAC 2 cut(s) 346, 400
SacII CCGCGG 1 cut(s) 454
SalI GTCGAC 1 cut(s) 598
SaqAI TTAA 1 cut(s) 677
Sau3AI GATC 5 cut(s) 34, 132, 228, 309, 479
Sau96I GGNCC 5 cut(s) 47, 144, 267, 448, 722
ScaI AGTACT 1 cut(s) 347
SchI GAGTC 6 cut(s) 109, 488, 575, 595, 604, 637
ScrFI CCNGG 6 cut(s) 137, 138, 148, 203, 280, 624
SduI GDGCHC 3 cut(s) 59, 201, 473
SfaNI GCATC 1 cut(s) 732
SfoI GGCGCC 1 cut(s) 507
Sfr303I CCGCGG 1 cut(s) 454
SfuI TTCGAA 1 cut(s) 248
SgrBI CCGCGG 1 cut(s) 454
SinI GGWCC 1 cut(s) 144
SmaI CCCGGG 1 cut(s) 138
SspDI GGCGCC 1 cut(s) 505
StyD4I CCNGG 6 cut(s) 135, 136, 146, 201, 278, 622
StyI CCWWGG 2 cut(s) 354, 793
TaaI ACNGT 1 cut(s) 461
TaiI ACGT 4 cut(s) 489, 521, 668, 686
TaqI TCGA 3 cut(s) 131, 248, 599
TatI WGTACW 1 cut(s) 345
TfiI GAWTC 3 cut(s) 11, 394, 697
Tru1I TTAA 1 cut(s) 677
Tru9I TTAA 1 cut(s) 677
TscAI CASTG 2 cut(s) 326, 558
TseI GCWGC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 600, 721
TspGWI ACGGA 1 cut(s) 314
TspMI CCCGGG 1 cut(s) 136
TspRI CASTG 2 cut(s) 326, 558
Tth111I GACNNNGTC 1 cut(s) 613
VpaK11BI GGWCC 1 cut(s) 144
XmaI CCCGGG 1 cut(s) 136
XmiI GTMKAC 2 cut(s) 599, 799
XmnI GAANNNNTTC 1 cut(s) 15
ZraI GACGTC 3 cut(s) 487, 666, 684
ZrmI AGTACT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.