Rh7BG300900
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001796
Physical Location & Seq
Reverse (-)
28581744 .. 28582923
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG300900.1

Sequence Viewer

Length: 591 bp
ATGAGCGACGACGGTGACGGAAACGTGTTCGGTGGAGGGTACGACGGGAATTTCCACGTCCAGCCGCCTTTAAAAAGGTCCGTGAGTGCCGGGTCGGGCGTGCCCGTGTCCACGGAGCTGTTCATGAACCCGGGTAGCCCGTCCGGGTCGGATGTGAGCGACTCCAGCGTGCAGGTGATGTCACCCTCCCCCATGTACAGGCCCGTGGCGCGTGCCGGCGGGGTTCTACCTCCAGTAGAAACGACGTCGTCTTCCAACAACAACAACAGCAGCCACATCAACCTCAACAGTGATCCTCCGACGTCGCTGTCCCTTTCGCTTCCTGGTGTTGACTCCTATGAAGTCTCGAACCGAGTGGCGGCGACCGAGTCGACGATTCAGAATCAGGCGCATCCTGCTCCTGCGCCGGTTTCTGATCCGATGAGGAGTTTTCCGGCGGAGCTGTTGGAGCTGATGCAGGGGATGATAAAGAAGGAGGTGAGGAGTTATATGGAGGGGTTGGAGCAGAGTGGGTTTGGGATGATGAAGCAGCAAAATGATGGGTTTAGGAATGTTGCGGTGAAGCGAATTGGGATCAGCAGGATTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022622 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0047484 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048527 GO:0048528 GO:0048583 GO:0048584 GO:0048585 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0090696 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901000 GO:1901001 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

196

Amino Acids

20.74

Weight (kDa)

5.04

Isoelectric Point (pI)

69.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 163
AasI GACNNNNNNGTC 1 cut(s) 307
AatII GACGTC 2 cut(s) 248, 305
Acc36I ACCTGC 1 cut(s) 163
AccI GTMKAC 1 cut(s) 371
AccII CGCG 1 cut(s) 211
AciI CCGC 5 cut(s) 65, 219, 359, 437, 557
AclWI GGATC 3 cut(s) 287, 410, 581
AcsI RAATTY 1 cut(s) 49
AcyI GRCGYC 2 cut(s) 245, 302
AfaI GTAC 2 cut(s) 41, 197
AfiI CCNNNNNNNGG 2 cut(s) 198, 358
AflIII ACRYGT 1 cut(s) 24
AjiI CACGTC 1 cut(s) 58
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 3 cut(s) 118, 442, 451
AluI AGCT 3 cut(s) 118, 442, 451
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 3 cut(s) 287, 410, 581
Ama87I CYCGRG 1 cut(s) 130
AoxI GGCC 1 cut(s) 200
ApeKI GCWGC 2 cut(s) 270, 529
ApoI RAATTY 1 cut(s) 49
AspLEI GCGC 3 cut(s) 211, 391, 406
AspS9I GGNCC 2 cut(s) 78, 201
AsuC2I CCSGG 4 cut(s) 91, 131, 132, 145
AsuHPI GGTGA 5 cut(s) 26, 174, 187, 490, 571
AvaI CYCGRG 1 cut(s) 130
AvaII GGWCC 1 cut(s) 78
BaeGI GKGCMC 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 243
BbvI GCAGC 2 cut(s) 282, 541
BccI CCATC 1 cut(s) 533
BciT130I CCWGG 1 cut(s) 324
BcnI CCSGG 4 cut(s) 91, 131, 132, 145
BcoDI GTCTC 1 cut(s) 349
BfuAI ACCTGC 1 cut(s) 163
BisI GCNGC 4 cut(s) 65, 271, 360, 530
BlsI GCNGC 4 cut(s) 66, 272, 361, 531
Bme1390I CCNGG 5 cut(s) 91, 131, 132, 145, 324
Bme18I GGWCC 1 cut(s) 78
BmeT110I CYCGRG 1 cut(s) 130
BmgBI CACGTC 1 cut(s) 58
BmgT120I GGNCC 2 cut(s) 78, 201
BmrFI CCNGG 5 cut(s) 91, 131, 132, 145, 324
BmsI GCATC 2 cut(s) 400, 444
BpiI GAAGAC 1 cut(s) 243
BpmI CTGGAG 2 cut(s) 148, 216
BpuMI CCSGG 4 cut(s) 91, 131, 132, 145
BsaHI GRCGYC 2 cut(s) 245, 302
BsaJI CCNNGG 3 cut(s) 111, 130, 204
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 358
Bse118I RCCGGY 2 cut(s) 215, 406
Bse1I ACTGG 1 cut(s) 233
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 3 cut(s) 111, 130, 204
BseGI GGATG 4 cut(s) 157, 391, 468, 525
BseLI CCNNNNNNNGG 2 cut(s) 198, 358
BseNI ACTGG 1 cut(s) 233
BseRI GAGGAG 2 cut(s) 439, 496
BseSI GKGCMC 1 cut(s) 105
BseXI GCAGC 2 cut(s) 282, 541
BsgI GTGCAG 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 211
Bsh1285I CGRYCG 1 cut(s) 366
BshFI GGCC 1 cut(s) 202
BsiEI CGRYCG 1 cut(s) 366
BsiHKCI CYCGRG 1 cut(s) 130
BsiSI CCGG 6 cut(s) 90, 131, 144, 216, 407, 434
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 2 cut(s) 198, 358
BsmAI GTCTC 1 cut(s) 349
BsmFI GGGAC 1 cut(s) 295
BsnI GGCC 1 cut(s) 202
BsoBI CYCGRG 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 105
Bsp1407I TGTACA 1 cut(s) 195
Bsp143I GATC 3 cut(s) 292, 415, 573
BspACI CCGC 5 cut(s) 65, 219, 359, 437, 557
BspANI GGCC 1 cut(s) 202
BspFNI CGCG 1 cut(s) 211
BspHI TCATGA 1 cut(s) 123
BspMI ACCTGC 1 cut(s) 163
BspPI GGATC 3 cut(s) 287, 410, 581
BsrFI RCCGGY 2 cut(s) 215, 406
BsrGI TGTACA 1 cut(s) 195
BsrI ACTGG 1 cut(s) 233
BssAI RCCGGY 2 cut(s) 215, 406
BssECI CCNNGG 3 cut(s) 111, 130, 204
BssMI GATC 3 cut(s) 292, 415, 573
BssNI GRCGYC 2 cut(s) 245, 302
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 2 cut(s) 14, 290
BstACI GRCGYC 2 cut(s) 245, 302
BstAUI TGTACA 1 cut(s) 195
BstC8I GCNNGC 4 cut(s) 101, 170, 213, 217
BstDSI CCRYGG 2 cut(s) 111, 204
BstF5I GGATG 4 cut(s) 157, 391, 468, 525
BstFNI CGCG 1 cut(s) 211
BstHHI GCGC 3 cut(s) 211, 391, 406
BstKTI GATC 3 cut(s) 295, 418, 576
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 3 cut(s) 292, 415, 573
BstMCI CGRYCG 1 cut(s) 366
BstMWI GCNNNNNNNGC 4 cut(s) 165, 208, 395, 448
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 5 cut(s) 89, 129, 130, 143, 322
BstSLI GKGCMC 1 cut(s) 105
BstUI CGCG 1 cut(s) 211
BstV1I GCAGC 2 cut(s) 282, 541
BstV2I GAAGAC 1 cut(s) 243
BsuRI GGCC 1 cut(s) 202
BtgI CCRYGG 2 cut(s) 111, 204
BtrI CACGTC 1 cut(s) 58
BtsCI GGATG 4 cut(s) 157, 391, 468, 525
BtsIMutI CAGTG 1 cut(s) 295
BveI ACCTGC 1 cut(s) 163
Cac8I GCNNGC 4 cut(s) 101, 170, 213, 217
CciI TCATGA 1 cut(s) 123
CfoI GCGC 3 cut(s) 211, 391, 406
Cfr10I RCCGGY 2 cut(s) 215, 406
Cfr13I GGNCC 2 cut(s) 78, 201
Cfr9I CCCGGG 1 cut(s) 130
Csp6I GTAC 2 cut(s) 40, 196
CviAII CATG 2 cut(s) 124, 193
CviJI RGCY 7 cut(s) 64, 118, 138, 202, 273, 442, 451
CviKI_1 RGCY 7 cut(s) 64, 118, 138, 202, 273, 442, 451
CviQI GTAC 2 cut(s) 40, 196
DpnI GATC 3 cut(s) 294, 417, 575
DpnII GATC 3 cut(s) 292, 415, 573
DraI TTTAAA 1 cut(s) 72
DrdI GACNNNNNNGTC 1 cut(s) 307
DseDI GACNNNNNNGTC 1 cut(s) 307
EciI GGCGGA 1 cut(s) 452
Eco47I GGWCC 1 cut(s) 78
Eco88I CYCGRG 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 322
FaeI CATG 2 cut(s) 127, 196
FaiI YATR 5 cut(s) 125, 194, 339, 489, 491
FaqI GGGAC 1 cut(s) 295
FatI CATG 2 cut(s) 123, 192
FauI CCCGC 1 cut(s) 212
FblI GTMKAC 1 cut(s) 371
Fnu4HI GCNGC 4 cut(s) 65, 271, 360, 530
FokI GGATG 4 cut(s) 164, 378, 475, 532
Fsp4HI GCNGC 4 cut(s) 65, 271, 360, 530
GlaI GCGC 3 cut(s) 210, 390, 405
GluI GCNGC 4 cut(s) 65, 271, 360, 530
GsuI CTGGAG 2 cut(s) 148, 216
HaeIII GGCC 1 cut(s) 202
HapII CCGG 6 cut(s) 90, 131, 144, 216, 407, 434
HhaI GCGC 3 cut(s) 211, 391, 406
Hin1I GRCGYC 2 cut(s) 245, 302
Hin1II CATG 2 cut(s) 127, 196
Hin6I GCGC 3 cut(s) 209, 389, 404
HinP1I GCGC 3 cut(s) 209, 389, 404
HincII GTYRAC 2 cut(s) 331, 372
HindII GTYRAC 2 cut(s) 331, 372
HinfI GANTC 5 cut(s) 161, 332, 368, 376, 382
HpaII CCGG 6 cut(s) 90, 131, 144, 216, 407, 434
HphI GGTGA 5 cut(s) 26, 174, 187, 490, 571
Hpy166II GTNNAC 3 cut(s) 111, 331, 372
Hpy188I TCNGA 5 cut(s) 151, 300, 381, 415, 420
Hpy188III TCNNGA 2 cut(s) 124, 346
Hpy8I GTNNAC 3 cut(s) 111, 331, 372
Hpy99I CGWCG 8 cut(s) 11, 14, 47, 247, 250, 304, 307, 376
HpyAV CCTTC 1 cut(s) 466
HpyCH4III ACNGT 2 cut(s) 14, 290
HpyCH4IV ACGT 4 cut(s) 24, 57, 245, 302
HpyCH4V TGCA 2 cut(s) 172, 457
HpyF10VI GCNNNNNNNGC 4 cut(s) 165, 208, 395, 448
HpySE526I ACGT 4 cut(s) 24, 57, 245, 302
Hsp92I GRCGYC 2 cut(s) 245, 302
Hsp92II CATG 2 cut(s) 127, 196
HspAI GCGC 3 cut(s) 209, 389, 404
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
Kzo9I GATC 3 cut(s) 292, 415, 573
LmnI GCTCC 5 cut(s) 115, 403, 439, 448, 502
Lsp1109I GCAGC 2 cut(s) 282, 541
LweI GCATC 2 cut(s) 400, 444
MaeII ACGT 4 cut(s) 24, 57, 245, 302
MaeIII GTNAC 2 cut(s) 14, 180
MalI GATC 3 cut(s) 294, 417, 575
MboI GATC 3 cut(s) 292, 415, 573
MboII GAAGA 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 2 cut(s) 49, 567
MlyI GAGTC 3 cut(s) 155, 326, 377
MmeI TCCRAC 5 cut(s) 129, 279, 323, 426, 480
MnlI CCTC 9 cut(s) 29, 196, 240, 293, 306, 417, 469, 474, 487
MroNI GCCGGC 1 cut(s) 215
MseI TTAA 1 cut(s) 71
MspI CCGG 6 cut(s) 90, 131, 144, 216, 407, 434
MspR9I CCNGG 5 cut(s) 91, 131, 132, 145, 324
MvaI CCWGG 1 cut(s) 324
MvnI CGCG 1 cut(s) 211
MwoI GCNNNNNNNGC 4 cut(s) 165, 208, 395, 448
NaeI GCCGGC 1 cut(s) 217
NciI CCSGG 4 cut(s) 91, 131, 132, 145
NdeII GATC 3 cut(s) 292, 415, 573
NgoMIV GCCGGC 1 cut(s) 215
NlaIII CATG 2 cut(s) 127, 196
NmuCI GTSAC 2 cut(s) 14, 180
PagI TCATGA 1 cut(s) 123
PaqCI CACCTGC 1 cut(s) 163
PdiI GCCGGC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 376, 382
PflFI GACNNNGTC 2 cut(s) 247, 367
PkrI GCNGC 4 cut(s) 66, 272, 361, 531
PleI GAGTC 3 cut(s) 155, 326, 376
PpsI GAGTC 3 cut(s) 155, 326, 376
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspPI GGNCC 2 cut(s) 78, 201
PsyI GACNNNGTC 2 cut(s) 247, 367
RsaI GTAC 2 cut(s) 41, 197
RsaNI GTAC 2 cut(s) 40, 196
SalI GTCGAC 1 cut(s) 370
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 4 cut(s) 65, 271, 360, 530
Sau3AI GATC 3 cut(s) 292, 415, 573
Sau96I GGNCC 2 cut(s) 78, 201
SchI GAGTC 3 cut(s) 155, 326, 377
ScrFI CCNGG 5 cut(s) 91, 131, 132, 145, 324
SduI GDGCHC 1 cut(s) 105
SfaNI GCATC 2 cut(s) 400, 444
SinI GGWCC 1 cut(s) 78
SmaI CCCGGG 1 cut(s) 132
Sse9I AATT 2 cut(s) 49, 567
SsiI CCGC 5 cut(s) 65, 219, 359, 437, 557
StyD4I CCNGG 5 cut(s) 89, 129, 130, 143, 322
TaaI ACNGT 2 cut(s) 14, 290
TaiI ACGT 4 cut(s) 27, 60, 248, 305
TaqI TCGA 2 cut(s) 347, 371
TaqII GACCGA 1 cut(s) 380
TasI AATT 2 cut(s) 49, 567
TatI WGTACW 1 cut(s) 195
TauI GCSGC 2 cut(s) 67, 362
TfiI GAWTC 2 cut(s) 376, 382
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 2 cut(s) 14, 180
TseI GCWGC 2 cut(s) 270, 529
Tsp45I GTSAC 2 cut(s) 14, 180
TspDTI ATGAA 4 cut(s) 112, 140, 354, 539
TspGWI ACGGA 3 cut(s) 33, 70, 128
TspMI CCCGGG 1 cut(s) 130
TspRI CASTG 1 cut(s) 295
Tth111I GACNNNGTC 2 cut(s) 247, 367
VpaK11BI GGWCC 1 cut(s) 78
XapI RAATTY 1 cut(s) 49
XmaI CCCGGG 1 cut(s) 130
XmiI GTMKAC 1 cut(s) 371
ZraI GACGTC 2 cut(s) 246, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.