AT4G37260
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001796
Physical Location & Seq
Forward (+)
17540490 .. 17541799
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G37260.1

Sequence Viewer

Length: 963 bp
ATGTCAAACCCGACCCGTAAGAATATGGAGAGGATTAAAGGTCCATGGAGTCCAGAAGAAGATGATCTGTTGCAGAGGCTTGTTCAGAAACATGGTCCGAGGAACTGGTCTTTGATTAGCAAATCAATCCCTGGACGTTCCGGCAAATCTTGTCGTCTCCGGTGGTGTAACCAGCTATCTCCGGAGGTAGAGCACCGTGCTTTTTCGCAGGAAGAAGACGAGACGATTATTCGAGCTCACGCTCGGTTTGGTAACAAGTGGGCTACGATCTCTCGTCTTCTCAATGGACGAACCGATAACGCTATCAAGAATCATTGGAACTCGACGCTGAAGCGAAAATGCAGCGTCGAAGGGCAAAGTTGTGATTTTGGTGGTAATGGAGGGTATGATGGTAATTTAGGAGAAGAGCAACCGTTGAAACGTACGGCGAGTGGTGGTGGTGGTGTCTCGACTGGCTTGTATATGAGTCCCGGAAGTCCATCGGGATCTGACGTCAGCGAGCAATCTAGTGGTGGTGCACACGTGTTTAAACCAACGGTTAGATCTGAGGTTACAGCGTCATCGTCTGGTGAAGATCCTCCAACTTATCTTAGTTTGTCTCTTCCTTGGACTGACGAGACGGTTCGAGTCAACGAGCCGGTTCAACTTAACCAGAATACGGTTATGGACGGTGGTTATACGGCGGAGCTGTTTCCGGTTAGAAAGGAAGAGCAAGTGGAAGTAGAAGAAGAAGAAGCGAAGGGGATATCTGGTGGATTCGGTGGTGAGTTCATGACGGTGGTTCAGGAGATGATAAGGACGGAGGTGAGGAGTTACATGGCGGATTTACAGCGAGGAAACGTCGGTGGTAGTAGTTCTGGCGGCGGAGGTGGCGGTTCGTGTATGCCACAAAGTGTAAACAGCCGTCGTGTTGGGTTTAGAGAGTTTATAGTGAACCAAATCGGAATTGGGAAGATGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022622 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0047484 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048527 GO:0048528 GO:0048583 GO:0048584 GO:0048585 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0090696 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901000 GO:1901001 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

320

Amino Acids

34.85

Weight (kDa)

6.06

Isoelectric Point (pI)

64.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 13 - 59 6.5e-20 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 16 - 75 3.8e-18 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 109 1.9e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 68 - 115 3.6e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 495
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 5 cut(s) 683, 821, 861, 864, 873
AclWI GGATC 2 cut(s) 493, 569
AcuI CTGAAG 1 cut(s) 350
AcvI CACGTG 1 cut(s) 523
AcyI GRCGYC 1 cut(s) 492
AdeI CACNNNGTG 1 cut(s) 893
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 1 cut(s) 658
AflIII ACRYGT 2 cut(s) 520, 522
AgsI TTSAA 2 cut(s) 418, 644
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 3 cut(s) 175, 236, 688
AluI AGCT 3 cut(s) 175, 236, 688
Alw21I GWGCWC 3 cut(s) 195, 238, 520
Alw26I GTCTC 5 cut(s) 161, 215, 451, 603, 611
Alw44I GTGCAC 1 cut(s) 516
AlwI GGATC 2 cut(s) 493, 569
Aor13HI TCCGGA 1 cut(s) 181
ApaLI GTGCAC 1 cut(s) 516
ApeKI GCWGC 1 cut(s) 342
AspS9I GGNCC 2 cut(s) 41, 95
AsuC2I CCSGG 1 cut(s) 471
AsuHPI GGTGA 3 cut(s) 581, 776, 817
AvaII GGWCC 2 cut(s) 41, 95
BaeGI GKGCMC 1 cut(s) 520
BanII GRGCYC 1 cut(s) 238
BbrPI CACGTG 1 cut(s) 523
BbsI GAAGAC 2 cut(s) 222, 269
Bbv12I GWGCWC 3 cut(s) 195, 238, 520
BbvI GCAGC 1 cut(s) 354
BccI CCATC 3 cut(s) 383, 487, 949
BceAI ACGGC 3 cut(s) 441, 696, 888
BciT130I CCWGG 1 cut(s) 132
BcnI CCSGG 1 cut(s) 471
BcoDI GTCTC 5 cut(s) 161, 215, 451, 603, 611
BfaI CTAG 1 cut(s) 507
BglII AGATCT 1 cut(s) 542
BisI GCNGC 2 cut(s) 343, 862
BlsI GCNGC 2 cut(s) 344, 863
Bme1390I CCNGG 2 cut(s) 132, 471
Bme18I GGWCC 2 cut(s) 41, 95
BmgT120I GGNCC 2 cut(s) 41, 95
BmrFI CCNGG 2 cut(s) 132, 471
BpiI GAAGAC 2 cut(s) 222, 269
BpuMI CCSGG 1 cut(s) 471
BsaAI YACGTR 1 cut(s) 523
BsaHI GRCGYC 1 cut(s) 492
BsaJI CCNNGG 4 cut(s) 44, 98, 130, 605
BsaWI WCCGGW 3 cut(s) 159, 181, 694
Bsc4I CCNNNNNNNGG 1 cut(s) 658
Bse118I RCCGGY 1 cut(s) 637
Bse1I ACTGG 2 cut(s) 110, 457
BseAI TCCGGA 1 cut(s) 181
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 4 cut(s) 44, 98, 130, 605
BseLI CCNNNNNNNGG 1 cut(s) 658
BseMII CTCAG 1 cut(s) 537
BseNI ACTGG 2 cut(s) 110, 457
BseRI GAGGAG 1 cut(s) 823
BseSI GKGCMC 1 cut(s) 520
BseXI GCAGC 1 cut(s) 354
BsiHKAI GWGCWC 3 cut(s) 195, 238, 520
BsiSI CCGG 6 cut(s) 141, 160, 182, 471, 638, 695
BsiWI CGTACG 1 cut(s) 422
BslFI GGGAC 1 cut(s) 453
BslI CCNNNNNNNGG 1 cut(s) 658
BsmAI GTCTC 5 cut(s) 161, 215, 451, 603, 611
BsmBI CGTCTC 3 cut(s) 161, 215, 611
BsmFI GGGAC 1 cut(s) 453
Bsp1286I GDGCHC 3 cut(s) 195, 238, 520
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 5 cut(s) 64, 267, 485, 542, 574
Bsp19I CCATGG 1 cut(s) 44
BspACI CCGC 5 cut(s) 683, 821, 861, 864, 873
BspCNI CTCAG 1 cut(s) 538
BspEI TCCGGA 1 cut(s) 181
BspHI TCATGA 1 cut(s) 771
BspPI GGATC 2 cut(s) 493, 569
BspQI GCTCTTC 2 cut(s) 399, 702
BsrFI RCCGGY 1 cut(s) 637
BsrI ACTGG 2 cut(s) 110, 457
BssAI RCCGGY 1 cut(s) 637
BssECI CCNNGG 4 cut(s) 44, 98, 130, 605
BssMI GATC 5 cut(s) 64, 267, 485, 542, 574
BssNI GRCGYC 1 cut(s) 492
BssT1I CCWWGG 2 cut(s) 44, 605
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 7 cut(s) 197, 414, 538, 622, 661, 671, 778
Bst6I CTCTTC 3 cut(s) 399, 606, 702
BstACI GRCGYC 1 cut(s) 492
BstBAI YACGTR 1 cut(s) 523
BstC8I GCNNGC 1 cut(s) 500
BstDEI CTNAG 2 cut(s) 546, 590
BstDSI CCRYGG 1 cut(s) 44
BstKTI GATC 5 cut(s) 67, 270, 488, 545, 577
BstMAI GTCTC 5 cut(s) 161, 215, 451, 603, 611
BstMBI GATC 5 cut(s) 64, 267, 485, 542, 574
BstMWI GCNNNNNNNGC 1 cut(s) 870
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 2 cut(s) 130, 469
BstSLI GKGCMC 1 cut(s) 520
BstV1I GCAGC 1 cut(s) 354
BstV2I GAAGAC 2 cut(s) 222, 269
BstX2I RGATCY 3 cut(s) 485, 542, 574
BstYI RGATCY 3 cut(s) 485, 542, 574
BtgI CCRYGG 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 500
CciI TCATGA 1 cut(s) 771
Cfr10I RCCGGY 1 cut(s) 637
Cfr13I GGNCC 2 cut(s) 41, 95
CseI GACGC 3 cut(s) 334, 334, 546
Csp6I GTAC 1 cut(s) 423
CviAII CATG 4 cut(s) 45, 92, 772, 817
CviJI RGCY 8 cut(s) 79, 175, 236, 263, 456, 637, 688, 903
CviKI_1 RGCY 8 cut(s) 79, 175, 236, 263, 456, 637, 688, 903
CviQI GTAC 1 cut(s) 423
DdeI CTNAG 2 cut(s) 546, 590
DpnI GATC 5 cut(s) 66, 269, 487, 544, 576
DpnII GATC 5 cut(s) 64, 267, 485, 542, 574
DraI TTTAAA 1 cut(s) 529
DraIII CACNNNGTG 1 cut(s) 893
Eam1104I CTCTTC 3 cut(s) 399, 606, 702
EarI CTCTTC 3 cut(s) 399, 606, 702
EciI GGCGGA 3 cut(s) 698, 836, 879
Ecl136II GAGCTC 1 cut(s) 236
Eco130I CCWWGG 2 cut(s) 44, 605
Eco24I GRGCYC 1 cut(s) 238
Eco32I GATATC 1 cut(s) 747
Eco47I GGWCC 2 cut(s) 41, 95
Eco53kI GAGCTC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 350
Eco72I CACGTG 1 cut(s) 523
EcoICRI GAGCTC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 130
EcoRV GATATC 1 cut(s) 747
EcoT14I CCWWGG 2 cut(s) 44, 605
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 2 cut(s) 44, 605
Esp3I CGTCTC 3 cut(s) 161, 215, 611
FaeI CATG 4 cut(s) 48, 95, 775, 820
FaqI GGGAC 1 cut(s) 453
FatI CATG 4 cut(s) 44, 91, 771, 816
Fnu4HI GCNGC 2 cut(s) 343, 862
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 2 cut(s) 343, 862
FspBI CTAG 1 cut(s) 507
GluI GCNGC 2 cut(s) 343, 862
HapII CCGG 6 cut(s) 141, 160, 182, 471, 638, 695
HgaI GACGC 3 cut(s) 334, 334, 546
Hin1I GRCGYC 1 cut(s) 492
Hin1II CATG 4 cut(s) 48, 95, 775, 820
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HinfI GANTC 5 cut(s) 49, 310, 466, 627, 756
HpaII CCGG 6 cut(s) 141, 160, 182, 471, 638, 695
HphI GGTGA 3 cut(s) 581, 776, 817
Hpy166II GTNNAC 4 cut(s) 518, 631, 898, 934
Hpy188I TCNGA 5 cut(s) 87, 99, 490, 547, 944
Hpy188III TCNNGA 7 cut(s) 53, 182, 307, 448, 483, 772, 785
Hpy8I GTNNAC 4 cut(s) 518, 631, 898, 934
Hpy99I CGWCG 4 cut(s) 328, 350, 845, 909
HpyAV CCTTC 2 cut(s) 344, 733
HpyCH4III ACNGT 7 cut(s) 197, 414, 538, 622, 661, 671, 778
HpyCH4IV ACGT 5 cut(s) 136, 421, 492, 522, 840
HpyCH4V TGCA 3 cut(s) 73, 342, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 870
HpyF3I CTNAG 2 cut(s) 546, 590
HpySE526I ACGT 5 cut(s) 136, 421, 492, 522, 840
Hsp92I GRCGYC 1 cut(s) 492
Hsp92II CATG 4 cut(s) 48, 95, 775, 820
Kpn2I TCCGGA 1 cut(s) 181
Kzo9I GATC 5 cut(s) 64, 267, 485, 542, 574
LguI GCTCTTC 2 cut(s) 399, 702
LmnI GCTCC 1 cut(s) 685
Lsp1109I GCAGC 1 cut(s) 354
MaeI CTAG 1 cut(s) 507
MaeII ACGT 5 cut(s) 136, 421, 492, 522, 840
MaeIII GTNAC 4 cut(s) 167, 251, 550, 812
MalI GATC 5 cut(s) 66, 269, 487, 544, 576
MboI GATC 5 cut(s) 64, 267, 485, 542, 574
MflI RGATCY 3 cut(s) 485, 542, 574
MhlI GDGCHC 3 cut(s) 195, 238, 520
MluCI AATT 2 cut(s) 394, 945
MlyI GAGTC 3 cut(s) 58, 475, 636
MmeI TCCRAC 1 cut(s) 605
MroI TCCGGA 1 cut(s) 181
MseI TTAA 3 cut(s) 36, 528, 648
MslI CAYNNNNRTG 1 cut(s) 776
MspI CCGG 6 cut(s) 141, 160, 182, 471, 638, 695
MspR9I CCNGG 2 cut(s) 132, 471
MssI GTTTAAAC 1 cut(s) 529
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 870
NciI CCSGG 1 cut(s) 471
NcoI CCATGG 1 cut(s) 44
NdeII GATC 5 cut(s) 64, 267, 485, 542, 574
NlaIII CATG 4 cut(s) 48, 95, 775, 820
PagI TCATGA 1 cut(s) 771
PciSI GCTCTTC 2 cut(s) 399, 702
PfeI GAWTC 2 cut(s) 310, 756
Pfl23II CGTACG 1 cut(s) 422
PfoI TCCNGGA 1 cut(s) 469
PkrI GCNGC 2 cut(s) 344, 863
PleI GAGTC 3 cut(s) 57, 474, 635
PmaCI CACGTG 1 cut(s) 523
PmeI GTTTAAAC 1 cut(s) 529
PmlI CACGTG 1 cut(s) 523
PpsI GAGTC 3 cut(s) 57, 474, 635
Ppu21I YACGTR 1 cut(s) 523
Psp124BI GAGCTC 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 130
PspCI CACGTG 1 cut(s) 523
PspGI CCWGG 1 cut(s) 130
PspLI CGTACG 1 cut(s) 422
PspPI GGNCC 2 cut(s) 41, 95
PsuI RGATCY 3 cut(s) 485, 542, 574
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
RseI CAYNNNNRTG 1 cut(s) 776
SacI GAGCTC 1 cut(s) 238
SapI GCTCTTC 2 cut(s) 399, 702
SaqAI TTAA 3 cut(s) 36, 528, 648
SatI GCNGC 2 cut(s) 343, 862
Sau3AI GATC 5 cut(s) 64, 267, 485, 542, 574
Sau96I GGNCC 2 cut(s) 41, 95
SchI GAGTC 3 cut(s) 58, 475, 636
ScrFI CCNGG 2 cut(s) 132, 471
SduI GDGCHC 3 cut(s) 195, 238, 520
SinI GGWCC 2 cut(s) 41, 95
SmiMI CAYNNNNRTG 1 cut(s) 776
Sse9I AATT 2 cut(s) 394, 945
SsiI CCGC 5 cut(s) 683, 821, 861, 864, 873
SspMI CTAG 1 cut(s) 507
SstI GAGCTC 1 cut(s) 238
StyD4I CCNGG 2 cut(s) 130, 469
StyI CCWWGG 2 cut(s) 44, 605
TaaI ACNGT 7 cut(s) 197, 414, 538, 622, 661, 671, 778
TaiI ACGT 5 cut(s) 139, 424, 495, 525, 843
TaqI TCGA 5 cut(s) 232, 323, 348, 449, 625
TasI AATT 2 cut(s) 394, 945
TauI GCSGC 1 cut(s) 864
TfiI GAWTC 2 cut(s) 310, 756
Tru1I TTAA 3 cut(s) 36, 528, 648
Tru9I TTAA 3 cut(s) 36, 528, 648
TseI GCWGC 1 cut(s) 342
TspDTI ATGAA 1 cut(s) 760
TspGWI ACGGA 1 cut(s) 815
VneI GTGCAC 1 cut(s) 516
VpaK11BI GGWCC 2 cut(s) 41, 95
XcmI CCANNNNNNNNNTGG 1 cut(s) 944
XspI CTAG 1 cut(s) 507
ZraI GACGTC 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.