Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001796

Physical Location & Seq

Genomic Coordinates Reverse (-)

36870086 .. 36872519

Gene Structure 2434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G430000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCTTCCACAAAGAAACTAGCGGATCGGATAAAGGGTCCGTGGAGCCCCGAAGAAGACGAAGCGTTACAGAAACTGGTGAAGAACTATGGCCCCAGAAACTGGTCTCTGATCAGCAAATCGATACCTGGTCGATCTGGCAAGTCTTGCCGTCTACGGTGGTGCAACCAGCTCTCACCGGAGGTGGAGCACCGCCCTTTCAGTCCTGATGAGGACGATACTATAATCCGGGCCCACGCCCGGTTCGGGAACAAGTGGGCCACCATCGCTCGCTTGCTCAATGGTCGCACCGATAACGCTATAAAGAACCACTGGAACTCCACGCTCAAGCGCAAATGCTCATCCATGTCCGAAGATTTGACCCCGGACGTCCATTCCCATCCGGCTCACAAACGATCCGCCAGTGTCGGTGCGGTTACGGCTGTTTCGGGTCTTTATTTGAACCCGGGTAGCCCGTCCGGATCAGATATGAGCGATTCTAGTCTGCCCGGTATTGTGTCGCCGACTCAAGTTTTCAGGCCTCTTGTGAGAACCGGACCCCTCATTGCTCCGCCGATGGAGGCCTCGTCTTCGGCTGTCGATCCACCGACCTCGCTCAGCCTCTCGCTGCCCGGATCTGACTCGAGTGACGGGTCGAATCACTTGGCGTCCGGGTTCGGATCCAACCCGGGGGTGAGCCCGACCTCGATGGTACAACAACCGCAAGAGGCAGCAGCCGCCGTGGCGGGAGCCCAGCTGCCACGTCAGAGCAACCAAAACAGTGAGATGGGGTACGATCAGCAGTTCTTCAGCTCAGAATTCTTGGATGTGATGCAGGAGATGATCAGAAAGGAAGTGAGGAACTACATGTCTGGGGTTGAGCAGACGGGGCTGTGCATGCACACCGAAGCCATTAGAAACGCCGTCGTAAAGCGTATTGGGATTAGCAAAATCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

313

Amino Acids

33.81

Weight (kDa)

8.65

Isoelectric Point (pI)

55.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23290 AT4G37260 AT5G67300
fragaria_vesca	FvH4_1g16770 FvH4_2g05210 FvH4_2g33810 FvH4_2g33810
malus_domestica	MD02G1179000.v1.1 MD05G1089600.v1.1 MD08G1092000.v1.1 MD15G1076600.v1.1 MD15G1288600.v1.1
prunus_persica	Prupe.1G430000_v2.0.a1 Prupe.6G229000_v2.0.a1 Prupe.8G134900_v2.0.a1
pyrus_communis	pycom02g14500 pycom05g08850 pycom08g07470 pycom15g07140
rosa_chinensis	RchiOBHm_Chr2g0106671 RchiOBHm_Chr6g0255341 RchiOBHm_Chr6g0308731
rosa_laevigata	RLG00000010626 RLG00000014846 RLG00000017529
rosa_multiflora	Rmu_co8261837.1_g000001 Rmu_sc0000871.1_g000019 Rmu_sc0000903.1_g000030 Rmu_sc0004000.1_g000004 Rmu_sc0011027.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136900 Rroxscaffold_7G00159990 Rroxscaffold_7G00210080
rosa_rugosa	Rorug02G0137600 Rorug05G0557500 Rorug06G0367900
rosa_samantha	Rh2BG199800 Rh6AG075800 Rh6AG478900 Rh6BG067700 Rh6BG488500 Rh6CG067400 Rh6CG493800 Rh6DG479400 Rh7BG300900
rosa_wichuraiana	Rw2G014830 Rw6G041730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	372
AccB7I	CCANNNNNTGG	1 cut(s)	102
AccI	GTMKAC	1 cut(s)	154
AccIII	TCCGGA	1 cut(s)	458
AciI	CCGC	8 cut(s)	23, 193, 399, 413, 551, 701, 717, 725
AclWI	GGATC	7 cut(s)	33, 390, 469, 575, 622, 654, 667
AcsI	RAATTY	1 cut(s)	797
AcuI	CTGAAG	1 cut(s)	772
AcyI	GRCGYC	2 cut(s)	369, 647
AfaI	GTAC	2 cut(s)	693, 773
AfiI	CCNNNNNNNGG	4 cut(s)	102, 240, 246, 669
AflIII	ACRYGT	1 cut(s)	846
AgsI	TTSAA	1 cut(s)	442
AjiI	CACGTC	1 cut(s)	743
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	3 cut(s)	172, 736, 792
AluI	AGCT	3 cut(s)	172, 736, 792
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	7 cut(s)	33, 390, 469, 575, 622, 654, 667
AlwNI	CAGNNNCTG	2 cut(s)	76, 102
Ama87I	CYCGRG	3 cut(s)	445, 622, 667
Aor13HI	TCCGGA	1 cut(s)	458
AoxI	GGCC	5 cut(s)	91, 231, 258, 518, 561
ApaI	GGGCCC	1 cut(s)	235
ApeKI	GCWGC	4 cut(s)	607, 710, 713, 736
ApoI	RAATTY	1 cut(s)	797
AspLEI	GCGC	1 cut(s)	333
AspS9I	GGNCC	6 cut(s)	38, 92, 231, 232, 258, 536
AsuHPI	GGTGA	3 cut(s)	91, 168, 685
AvaI	CYCGRG	3 cut(s)	445, 622, 667
AvaII	GGWCC	2 cut(s)	38, 536
BaeGI	GKGCMC	1 cut(s)	235
BamHI	GGATCC	1 cut(s)	659
BanII	GRGCYC	4 cut(s)	50, 235, 680, 733
BbsI	GAAGAC	2 cut(s)	63, 561
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	4 cut(s)	594, 722, 723, 725
BccI	CCATC	5 cut(s)	272, 387, 550, 682, 760
BceAI	ACGGC	4 cut(s)	135, 435, 704, 887
BciT130I	CCWGG	1 cut(s)	129
BclI	TGATCA	2 cut(s)	111, 822
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	2 cut(s)	20, 480
BglI	GCCNNNNNGGC	1 cut(s)	722
BisI	GCNGC	5 cut(s)	608, 711, 714, 717, 737
BlpI	GCTNAGC	1 cut(s)	596
BlsI	GCNGC	5 cut(s)	609, 712, 715, 718, 738
Bme18I	GGWCC	2 cut(s)	38, 536
BmeT110I	CYCGRG	3 cut(s)	445, 622, 667
BmgBI	CACGTC	1 cut(s)	743
BmgT120I	GGNCC	6 cut(s)	38, 92, 231, 232, 258, 536
BmiI	GGNNCC	7 cut(s)	39, 47, 94, 233, 538, 661, 730
BmsI	GCATC	1 cut(s)	801
BpiI	GAAGAC	2 cut(s)	63, 561
Bpu1102I	GCTNAGC	1 cut(s)	596
BpuEI	CTTGAG	2 cut(s)	311, 492
Bsa29I	ATCGAT	1 cut(s)	122
BsaHI	GRCGYC	2 cut(s)	369, 647
BsaI	GGTCTC	1 cut(s)	111
BsaJI	CCNNGG	6 cut(s)	41, 363, 445, 667, 668, 720
BsaWI	WCCGGW	3 cut(s)	178, 458, 533
BsaXI	ACNNNNNCTCC	4 cut(s)	302, 332, 551, 581
Bsc4I	CCNNNNNNNGG	4 cut(s)	102, 240, 246, 669
Bse1I	ACTGG	4 cut(s)	81, 107, 317, 402
Bse3DI	GCAATG	1 cut(s)	543
BseAI	TCCGGA	1 cut(s)	458
BseBI	CCWGG	1 cut(s)	129
BseCI	ATCGAT	1 cut(s)	122
BseDI	CCNNGG	6 cut(s)	41, 363, 445, 667, 668, 720
BseGI	GGATG	3 cut(s)	341, 379, 811
BseLI	CCNNNNNNNGG	4 cut(s)	102, 240, 246, 669
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	2 cut(s)	610, 807
BseNI	ACTGG	4 cut(s)	81, 107, 317, 402
BseSI	GKGCMC	1 cut(s)	235
BseXI	GCAGC	4 cut(s)	594, 722, 723, 725
BseYI	CCCAGC	1 cut(s)	732
BshFI	GGCC	5 cut(s)	93, 233, 260, 520, 563
BshVI	ATCGAT	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	3 cut(s)	445, 622, 667
BslI	CCNNNNNNNGG	4 cut(s)	102, 240, 246, 669
BsmAI	GTCTC	1 cut(s)	111
BsnI	GGCC	5 cut(s)	93, 233, 260, 520, 563
Bso31I	GGTCTC	1 cut(s)	111
BsoBI	CYCGRG	3 cut(s)	445, 622, 667
Bsp120I	GGGCCC	1 cut(s)	231
Bsp1286I	GDGCHC	5 cut(s)	50, 192, 235, 680, 733
Bsp13I	TCCGGA	1 cut(s)	458
Bsp1720I	GCTNAGC	1 cut(s)	596
BspACI	CCGC	8 cut(s)	23, 193, 399, 413, 551, 701, 717, 725
BspANI	GGCC	5 cut(s)	93, 233, 260, 520, 563
BspCNI	CTCAG	2 cut(s)	609, 806
BspDI	ATCGAT	1 cut(s)	122
BspEI	TCCGGA	1 cut(s)	458
BspLI	GGNNCC	7 cut(s)	39, 47, 94, 233, 538, 661, 730
BspPI	GGATC	7 cut(s)	33, 390, 469, 575, 622, 654, 667
BspTNI	GGTCTC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	543
BsrI	ACTGG	4 cut(s)	81, 107, 317, 402
BssECI	CCNNGG	6 cut(s)	41, 363, 445, 667, 668, 720
BssNI	GRCGYC	2 cut(s)	369, 647
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	159, 761
BstACI	GRCGYC	2 cut(s)	369, 647
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstC8I	GCNNGC	3 cut(s)	271, 275, 878
BstDEI	CTNAG	2 cut(s)	596, 793
BstDSI	CCRYGG	2 cut(s)	41, 720
BstF5I	GGATG	3 cut(s)	341, 379, 811
BstHHI	GCGC	1 cut(s)	333
BstMAI	GTCTC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	7 cut(s)	147, 266, 419, 716, 722, 868, 877
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	2 cut(s)	850, 880
BstSLI	GKGCMC	1 cut(s)	235
BstV1I	GCAGC	4 cut(s)	594, 722, 723, 725
BstV2I	GAAGAC	2 cut(s)	63, 561
BstX2I	RGATCY	2 cut(s)	614, 659
BstYI	RGATCY	2 cut(s)	614, 659
Bsu15I	ATCGAT	1 cut(s)	122
BsuRI	GGCC	5 cut(s)	93, 233, 260, 520, 563
BsuTUI	ATCGAT	1 cut(s)	122
BtgI	CCRYGG	2 cut(s)	41, 720
BtgZI	GCGATG	1 cut(s)	250
BtrI	CACGTC	1 cut(s)	743
BtsCI	GGATG	3 cut(s)	341, 379, 811
BtsIMutI	CAGTG	3 cut(s)	310, 409, 766
Cac8I	GCNNGC	3 cut(s)	271, 275, 878
CaiI	CAGNNNCTG	2 cut(s)	76, 102
CfoI	GCGC	1 cut(s)	333
Cfr13I	GGNCC	6 cut(s)	38, 92, 231, 232, 258, 536
Cfr9I	CCCGGG	2 cut(s)	445, 667
ClaI	ATCGAT	1 cut(s)	122
CseI	GACGC	1 cut(s)	636
CsiI	ACCWGGT	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	692, 772
CviAII	CATG	3 cut(s)	346, 847, 877
CviQI	GTAC	2 cut(s)	692, 772
DdeI	CTNAG	2 cut(s)	596, 793
EciI	GGCGGA	2 cut(s)	388, 540
Eco147I	AGGCCT	2 cut(s)	520, 563
Eco24I	GRGCYC	4 cut(s)	50, 235, 680, 733
Eco31I	GGTCTC	1 cut(s)	111
Eco47I	GGWCC	2 cut(s)	38, 536
Eco57I	CTGAAG	1 cut(s)	772
Eco88I	CYCGRG	3 cut(s)	445, 622, 667
EcoRI	GAATTC	1 cut(s)	797
EcoRII	CCWGG	1 cut(s)	127
EcoT38I	GRGCYC	4 cut(s)	50, 235, 680, 733
FaeI	CATG	3 cut(s)	349, 850, 880
FaiI	YATR	7 cut(s)	90, 224, 302, 347, 470, 848, 878
FatI	CATG	3 cut(s)	345, 846, 876
FauI	CCCGC	1 cut(s)	718
FbaI	TGATCA	2 cut(s)	111, 822
FblI	GTMKAC	1 cut(s)	154
Fnu4HI	GCNGC	5 cut(s)	608, 711, 714, 717, 737
FokI	GGATG	3 cut(s)	328, 366, 818
FriOI	GRGCYC	4 cut(s)	50, 235, 680, 733
Fsp4HI	GCNGC	5 cut(s)	608, 711, 714, 717, 737
FspBI	CTAG	2 cut(s)	20, 480
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	5 cut(s)	608, 711, 714, 717, 737
GsaI	CCCAGC	1 cut(s)	736
HaeIII	GGCC	5 cut(s)	93, 233, 260, 520, 563
HgaI	GACGC	1 cut(s)	636
HhaI	GCGC	1 cut(s)	333
Hin1I	GRCGYC	2 cut(s)	369, 647
Hin1II	CATG	3 cut(s)	349, 850, 880
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HinfI	GANTC	4 cut(s)	476, 505, 620, 637
HphI	GGTGA	3 cut(s)	91, 168, 685
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188I	TCNGA	9 cut(s)	30, 111, 352, 466, 619, 659, 747, 796, 827
Hpy188III	TCNNGA	3 cut(s)	206, 247, 459
Hpy8I	GTNNAC	1 cut(s)	155
Hpy99I	CGWCG	1 cut(s)	908
HpyCH4III	ACNGT	2 cut(s)	159, 761
HpyCH4IV	ACGT	2 cut(s)	369, 742
HpyCH4V	TGCA	4 cut(s)	165, 814, 876, 880
HpyF10VI	GCNNNNNNNGC	7 cut(s)	147, 266, 419, 716, 722, 868, 877
HpyF3I	CTNAG	2 cut(s)	596, 793
HpySE526I	ACGT	2 cut(s)	369, 742
Hsp92I	GRCGYC	2 cut(s)	369, 647
Hsp92II	CATG	3 cut(s)	349, 850, 880
HspAI	GCGC	1 cut(s)	331
Kpn2I	TCCGGA	1 cut(s)	458
Ksp22I	TGATCA	2 cut(s)	111, 822
LmnI	GCTCC	4 cut(s)	45, 187, 553, 728
Lsp1109I	GCAGC	4 cut(s)	594, 722, 723, 725
LweI	GCATC	1 cut(s)	801
MabI	ACCWGGT	1 cut(s)	127
MaeI	CTAG	2 cut(s)	20, 480
MaeII	ACGT	2 cut(s)	369, 742
MaeIII	GTNAC	3 cut(s)	66, 415, 626
MboII	GAAGA	6 cut(s)	65, 68, 94, 365, 561, 778
MflI	RGATCY	2 cut(s)	614, 659
MhlI	GDGCHC	5 cut(s)	50, 192, 235, 680, 733
MluCI	AATT	1 cut(s)	797
MlyI	GAGTC	2 cut(s)	499, 614
MmeI	TCCRAC	1 cut(s)	687
MroI	TCCGGA	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	736
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	7 cut(s)	147, 266, 419, 716, 722, 868, 877
NlaIII	CATG	3 cut(s)	349, 850, 880
NlaIV	GGNNCC	7 cut(s)	39, 47, 94, 233, 538, 661, 730
NmuCI	GTSAC	1 cut(s)	626
NspI	RCATGY	2 cut(s)	850, 880
PaeI	GCATGC	1 cut(s)	880
PaeR7I	CTCGAG	1 cut(s)	622
PceI	AGGCCT	2 cut(s)	520, 563
PciI	ACATGT	1 cut(s)	846
PfeI	GAWTC	2 cut(s)	476, 637
PflMI	CCANNNNNTGG	1 cut(s)	102
PkrI	GCNGC	5 cut(s)	609, 712, 715, 718, 738
PleI	GAGTC	2 cut(s)	499, 614
PpsI	GAGTC	2 cut(s)	499, 614
PscI	ACATGT	1 cut(s)	846
Psp6I	CCWGG	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	732
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	7 cut(s)	39, 47, 94, 233, 538, 661, 730
PspOMI	GGGCCC	1 cut(s)	231
PspPI	GGNCC	6 cut(s)	38, 92, 231, 232, 258, 536
PspXI	VCTCGAGB	1 cut(s)	622
PstNI	CAGNNNCTG	2 cut(s)	76, 102
PsuI	RGATCY	2 cut(s)	614, 659
PvuII	CAGCTG	1 cut(s)	736
RsaI	GTAC	2 cut(s)	693, 773
RsaNI	GTAC	2 cut(s)	692, 772
SatI	GCNGC	5 cut(s)	608, 711, 714, 717, 737
Sau96I	GGNCC	6 cut(s)	38, 92, 231, 232, 258, 536
SchI	GAGTC	2 cut(s)	499, 614
SduI	GDGCHC	5 cut(s)	50, 192, 235, 680, 733
SetI	ASST	9 cut(s)	130, 174, 186, 372, 593, 686, 738, 745, 794
SexAI	ACCWGGT	1 cut(s)	127
SfaNI	GCATC	1 cut(s)	801
Sfr274I	CTCGAG	1 cut(s)	622
SinI	GGWCC	2 cut(s)	38, 536
SlaI	CTCGAG	1 cut(s)	622
SmaI	CCCGGG	2 cut(s)	447, 669
SmlI	CTYRAG	3 cut(s)	326, 507, 622
SmoI	CTYRAG	3 cut(s)	326, 507, 622
SphI	GCATGC	1 cut(s)	880
Sse9I	AATT	1 cut(s)	797
SseBI	AGGCCT	2 cut(s)	520, 563
SsiI	CCGC	8 cut(s)	23, 193, 399, 413, 551, 701, 717, 725
SspMI	CTAG	2 cut(s)	20, 480
StuI	AGGCCT	2 cut(s)	520, 563
TaaI	ACNGT	2 cut(s)	159, 761
TaiI	ACGT	2 cut(s)	372, 745
TaqI	TCGA	7 cut(s)	122, 133, 579, 623, 635, 686, 933
TasI	AATT	1 cut(s)	797
TauI	GCSGC	1 cut(s)	719
TfiI	GAWTC	2 cut(s)	476, 637
TscAI	CASTG	3 cut(s)	317, 409, 766
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	4 cut(s)	607, 710, 713, 736
Tsp45I	GTSAC	1 cut(s)	626
TspGWI	ACGGA	1 cut(s)	30
TspMI	CCCGGG	2 cut(s)	445, 667
TspRI	CASTG	3 cut(s)	317, 409, 766
Van91I	CCANNNNNTGG	1 cut(s)	102
VpaK11BI	GGWCC	2 cut(s)	38, 536
XapI	RAATTY	1 cut(s)	797
XceI	RCATGY	2 cut(s)	850, 880
XhoI	CTCGAG	1 cut(s)	622
XmaI	CCCGGG	2 cut(s)	445, 667
XmiI	GTMKAC	1 cut(s)	154
XspI	CTAG	2 cut(s)	20, 480
ZraI	GACGTC	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.