Rh6AG075800
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001796
Physical Location & Seq
Forward (+)
10669690 .. 10671471
1782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG075800.1

Sequence Viewer

Length: 867 bp
ATGGATAGCGAATCGGTTCAGCGGCAACAGAGGGAGTTGGATCGGGTTAAGGGGCCGTGGAGCCCCGAAGAGGACGACTTGCTGAGGAAGCTGGTGCAGCGGCACGGCGCTCGGAACTGGACGCTGATAAGCAAGTCGATTCCCGGCCGGTCCGGCAAGTCGTGCCGGCTTCGGTGGTGCAATCAACTCTCGCCGGAGGTGGAGCACAGGGCGTTCACGGCGGAGGAGGACGAGATAATCGCGGCGGCGCATTCGAAGTACGGCAACAAGTGGGCCACCATAGCCAGGCTCCTCAACGGCCGTACGGACAATGCGATCAAGAACCACTGGAACTCCACTCTGAAGCGGAAGTACTCGTCCATGGCGGAAGACGGCGTCGTCGGCGGCGGAGGCGGTTCGATCGAGGAGCATCATTACCACCACCACCACCTCAGGCCGGAGAAGAAATCGGCTACGGTTTCGGTGTCTGGCCGCGGATACAGTCCGACGAGCCCGTCCGGATCCGACATCAGCGACTCCGGCGTGGTGCCTGCAGTGTCGTCGGCGCAGGTGTTCAGGCCAGTGGCGAGAGCAGTGTTGAGGACGGAGTCGCCGCCGAGCCAGAACGAAATGATCCACAATGAACCGGAGCCGTCGACTCTGCTGACTCTGTCGTTACCTGGAGGCTACTCGACCGGGTTGGCGACTCGCCGAGAAGAAAGAACGACGTCGTTGCAGCAGCAGCAGCAGGAGGCTGAGAATGAGAACAGAACGATGTCGTTTGGGCCGGAGTTCATGTCTTTTATGCAGGAGATGATTAGGAGGGAGGTTAGGAACTACATGGATGACATGAACGGTCAGCACTTTGGTATACCCAAGCTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

288

Amino Acids

32.35

Weight (kDa)

7.88

Isoelectric Point (pI)

65.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 17 - 63 1.5e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 20 - 77 5.2e-17 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 71 - 113 2.8e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 119 9e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 538
AasI GACNNNNNNGTC 2 cut(s) 377, 493
AatII GACGTC 1 cut(s) 710
Acc36I ACCTGC 1 cut(s) 538
AccB1I GGYRCC 1 cut(s) 526
AccI GTMKAC 2 cut(s) 635, 850
AccII CGCG 2 cut(s) 242, 474
AccIII TCCGGA 1 cut(s) 497
AclWI GGATC 4 cut(s) 48, 495, 508, 607
AcoI YGGCCR 3 cut(s) 145, 298, 469
AcuI CTGAAG 1 cut(s) 362
AcyI GRCGYC 2 cut(s) 375, 707
AfaI GTAC 3 cut(s) 260, 304, 353
AfiI CCNNNNNNNGG 3 cut(s) 70, 285, 436
AjnI CCWGG 2 cut(s) 284, 658
AluBI AGCT 2 cut(s) 91, 859
AluI AGCT 2 cut(s) 91, 859
Alw21I GWGCWC 1 cut(s) 207
AlwI GGATC 4 cut(s) 48, 495, 508, 607
Aor13HI TCCGGA 1 cut(s) 497
AoxI GGCC 8 cut(s) 53, 145, 273, 298, 434, 469, 557, 764
ApeKI GCWGC 5 cut(s) 97, 715, 718, 721, 724
Asp700I GAANNNNTTC 1 cut(s) 15
AspLEI GCGC 3 cut(s) 110, 250, 547
AspS9I GGNCC 4 cut(s) 53, 150, 273, 764
AsuC2I CCSGG 2 cut(s) 144, 676
AsuII TTCGAA 1 cut(s) 254
AvaII GGWCC 1 cut(s) 150
AxyI CCTNAGG 1 cut(s) 431
BamHI GGATCC 1 cut(s) 500
BanI GGYRCC 1 cut(s) 526
BanII GRGCYC 2 cut(s) 65, 494
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
BbsI GAAGAC 1 cut(s) 375
Bbv12I GWGCWC 1 cut(s) 207
BbvCI CCTCAGC 1 cut(s) 83
BbvI GCAGC 5 cut(s) 109, 727, 730, 733, 736
BceAI ACGGC 8 cut(s) 40, 121, 234, 277, 285, 313, 388, 616
BcgI CGANNNNNNTGC 6 cut(s) 92, 126, 522, 556, 694, 728
BciT130I CCWGG 2 cut(s) 286, 660
BciVI GTATCC 1 cut(s) 470
BcnI CCSGG 2 cut(s) 144, 676
BfmI CTRYAG 1 cut(s) 531
BfoI RGCGCY 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 538
BfuI GTATCC 1 cut(s) 470
BglI GCCNNNNNGGC 1 cut(s) 153
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 4 cut(s) 144, 286, 660, 676
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 4 cut(s) 53, 150, 273, 764
BmiI GGNNCC 6 cut(s) 54, 62, 290, 502, 528, 630
BmrFI CCNGG 4 cut(s) 144, 286, 660, 676
BmsI GCATC 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 681
Bpu10I CCTNAGC 1 cut(s) 83
Bpu14I TTCGAA 1 cut(s) 254
BpuMI CCSGG 2 cut(s) 144, 676
BsaHI GRCGYC 2 cut(s) 375, 707
BsaJI CCNNGG 3 cut(s) 56, 360, 472
BsaWI WCCGGW 2 cut(s) 497, 625
BsaXI ACNNNNNCTCC 4 cut(s) 317, 347, 761, 791
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 285, 436
Bse118I RCCGGY 2 cut(s) 147, 165
Bse1I ACTGG 3 cut(s) 122, 332, 560
Bse21I CCTNAGG 1 cut(s) 431
BseAI TCCGGA 1 cut(s) 497
BseBI CCWGG 2 cut(s) 286, 660
BseDI CCNNGG 3 cut(s) 56, 360, 472
BseGI GGATG 1 cut(s) 829
BseLI CCNNNNNNNGG 3 cut(s) 70, 285, 436
BseMII CTCAG 3 cut(s) 74, 445, 726
BseNI ACTGG 3 cut(s) 122, 332, 560
BseRI GAGGAG 3 cut(s) 239, 281, 419
BseX3I CGGCCG 2 cut(s) 145, 298
BseXI GCAGC 5 cut(s) 109, 727, 730, 733, 736
BsgI GTGCAG 1 cut(s) 116
Bsh1236I CGCG 2 cut(s) 242, 474
Bsh1285I CGRYCG 4 cut(s) 148, 301, 402, 675
BshFI GGCC 8 cut(s) 55, 147, 275, 300, 436, 471, 559, 766
BshNI GGYRCC 1 cut(s) 526
BsiEI CGRYCG 4 cut(s) 148, 301, 402, 675
BsiHKAI GWGCWC 1 cut(s) 207
BsiWI CGTACG 1 cut(s) 302
BslI CCNNNNNNNGG 3 cut(s) 70, 285, 436
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 8 cut(s) 55, 147, 275, 300, 436, 471, 559, 766
Bsp119I TTCGAA 1 cut(s) 254
Bsp1286I GDGCHC 3 cut(s) 65, 207, 494
Bsp13I TCCGGA 1 cut(s) 497
Bsp143I GATC 5 cut(s) 40, 315, 399, 500, 612
Bsp19I CCATGG 1 cut(s) 360
BspANI GGCC 8 cut(s) 55, 147, 275, 300, 436, 471, 559, 766
BspCNI CTCAG 3 cut(s) 75, 444, 727
BspEI TCCGGA 1 cut(s) 497
BspFNI CGCG 2 cut(s) 242, 474
BspLI GGNNCC 6 cut(s) 54, 62, 290, 502, 528, 630
BspMAI CTGCAG 1 cut(s) 535
BspMI ACCTGC 1 cut(s) 538
BspPI GGATC 4 cut(s) 48, 495, 508, 607
BspT104I TTCGAA 1 cut(s) 254
BspT107I GGYRCC 1 cut(s) 526
BsrFI RCCGGY 2 cut(s) 147, 165
BsrI ACTGG 3 cut(s) 122, 332, 560
BssAI RCCGGY 2 cut(s) 147, 165
BssECI CCNNGG 3 cut(s) 56, 360, 472
BssMI GATC 5 cut(s) 40, 315, 399, 500, 612
BssNAI GTATAC 1 cut(s) 851
BssNI GRCGYC 2 cut(s) 375, 707
BssT1I CCWWGG 1 cut(s) 360
Bst1107I GTATAC 1 cut(s) 851
Bst2UI CCWGG 2 cut(s) 286, 660
Bst4CI ACNGT 3 cut(s) 457, 482, 836
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 2 cut(s) 375, 707
BstAPI GCANNNNNTGC 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 254
BstC8I GCNNGC 2 cut(s) 167, 531
BstDEI CTNAG 3 cut(s) 83, 431, 735
BstDSI CCRYGG 3 cut(s) 56, 360, 472
BstF5I GGATG 1 cut(s) 829
BstFNI CGCG 2 cut(s) 242, 474
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 3 cut(s) 110, 250, 547
BstKTI GATC 5 cut(s) 43, 318, 402, 503, 615
BstMBI GATC 5 cut(s) 40, 315, 399, 500, 612
BstMCI CGRYCG 4 cut(s) 148, 301, 402, 675
BstNI CCWGG 2 cut(s) 286, 660
BstSCI CCNGG 4 cut(s) 142, 284, 658, 674
BstSFI CTRYAG 1 cut(s) 531
BstUI CGCG 2 cut(s) 242, 474
BstV1I GCAGC 5 cut(s) 109, 727, 730, 733, 736
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 500
BstYI RGATCY 1 cut(s) 500
BstZ17I GTATAC 1 cut(s) 851
BstZI CGGCCG 2 cut(s) 145, 298
Bsu36I CCTNAGG 1 cut(s) 431
BsuI GTATCC 1 cut(s) 470
BsuRI GGCC 8 cut(s) 55, 147, 275, 300, 436, 471, 559, 766
BtgI CCRYGG 3 cut(s) 56, 360, 472
BtsCI GGATG 1 cut(s) 829
BtsI GCAGTG 2 cut(s) 540, 579
BtsIMutI CAGTG 4 cut(s) 325, 540, 567, 579
BveI ACCTGC 1 cut(s) 538
Cac8I GCNNGC 2 cut(s) 167, 531
CfoI GCGC 3 cut(s) 110, 250, 547
Cfr10I RCCGGY 2 cut(s) 147, 165
Cfr13I GGNCC 4 cut(s) 53, 150, 273, 764
Cfr42I CCGCGG 1 cut(s) 475
CpoI CGGWCCG 1 cut(s) 150
CseI GACGC 2 cut(s) 130, 364
Csp6I GTAC 3 cut(s) 259, 303, 352
CspI CGGWCCG 1 cut(s) 150
CviAII CATG 4 cut(s) 361, 775, 820, 829
CviQI GTAC 3 cut(s) 259, 303, 352
DdeI CTNAG 3 cut(s) 83, 431, 735
DpnI GATC 5 cut(s) 42, 317, 401, 502, 614
DpnII GATC 5 cut(s) 40, 315, 399, 500, 612
DrdI GACNNNNNNGTC 2 cut(s) 377, 493
DseDI GACNNNNNNGTC 2 cut(s) 377, 493
EaeI YGGCCR 3 cut(s) 145, 298, 469
EagI CGGCCG 2 cut(s) 145, 298
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
EciI GGCGGA 3 cut(s) 236, 380, 402
EclXI CGGCCG 2 cut(s) 145, 298
Eco130I CCWWGG 1 cut(s) 360
Eco24I GRGCYC 2 cut(s) 65, 494
Eco47I GGWCC 1 cut(s) 150
Eco52I CGGCCG 2 cut(s) 145, 298
Eco57I CTGAAG 1 cut(s) 362
Eco81I CCTNAGG 1 cut(s) 431
EcoRII CCWGG 2 cut(s) 284, 658
EcoT14I CCWWGG 1 cut(s) 360
EcoT38I GRGCYC 2 cut(s) 65, 494
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 4 cut(s) 364, 778, 823, 832
FaiI YATR 8 cut(s) 281, 362, 776, 785, 821, 830, 851, 865
FatI CATG 4 cut(s) 360, 774, 819, 828
FblI GTMKAC 2 cut(s) 635, 850
FokI GGATG 1 cut(s) 836
FriOI GRGCYC 2 cut(s) 65, 494
GlaI GCGC 3 cut(s) 109, 249, 546
GsuI CTGGAG 1 cut(s) 681
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 8 cut(s) 55, 147, 275, 300, 436, 471, 559, 766
HgaI GACGC 2 cut(s) 130, 364
HhaI GCGC 3 cut(s) 110, 250, 547
Hin1I GRCGYC 2 cut(s) 375, 707
Hin1II CATG 4 cut(s) 364, 778, 823, 832
Hin6I GCGC 3 cut(s) 108, 248, 545
HinP1I GCGC 3 cut(s) 108, 248, 545
HincII GTYRAC 1 cut(s) 636
HindII GTYRAC 1 cut(s) 636
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 7 cut(s) 11, 139, 515, 587, 637, 646, 685
Hpy166II GTNNAC 3 cut(s) 216, 636, 851
Hpy188I TCNGA 4 cut(s) 114, 342, 486, 505
Hpy188III TCNNGA 2 cut(s) 319, 498
Hpy8I GTNNAC 3 cut(s) 216, 636, 851
Hpy99I CGWCG 7 cut(s) 380, 383, 490, 544, 637, 709, 712
HpyCH4III ACNGT 3 cut(s) 457, 482, 836
HpyCH4IV ACGT 1 cut(s) 707
HpyCH4V TGCA 5 cut(s) 97, 180, 533, 715, 787
HpyF3I CTNAG 3 cut(s) 83, 431, 735
HpySE526I ACGT 1 cut(s) 707
Hsp92I GRCGYC 2 cut(s) 375, 707
Hsp92II CATG 4 cut(s) 364, 778, 823, 832
HspAI GCGC 3 cut(s) 108, 248, 545
Kpn2I TCCGGA 1 cut(s) 497
KroI GCCGGC 1 cut(s) 165
KroNI GCCGGC 1 cut(s) 167
KspI CCGCGG 1 cut(s) 475
Kzo9I GATC 5 cut(s) 40, 315, 399, 500, 612
LmnI GCTCC 5 cut(s) 60, 202, 294, 406, 628
Lsp1109I GCAGC 5 cut(s) 109, 727, 730, 733, 736
LweI GCATC 1 cut(s) 418
MaeII ACGT 1 cut(s) 707
MaeIII GTNAC 1 cut(s) 654
MalI GATC 5 cut(s) 42, 317, 401, 502, 614
MboI GATC 5 cut(s) 40, 315, 399, 500, 612
MboII GAAGA 4 cut(s) 80, 380, 454, 707
MflI RGATCY 1 cut(s) 500
MhlI GDGCHC 3 cut(s) 65, 207, 494
MlyI GAGTC 5 cut(s) 509, 596, 631, 640, 679
MmeI TCCRAC 3 cut(s) 18, 509, 528
MroI TCCGGA 1 cut(s) 497
MroNI GCCGGC 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 1 cut(s) 48
MspA1I CMGCKG 3 cut(s) 22, 100, 474
MspR9I CCNGG 4 cut(s) 144, 286, 660, 676
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 2 cut(s) 286, 660
MvnI CGCG 2 cut(s) 242, 474
NaeI GCCGGC 1 cut(s) 167
NciI CCSGG 2 cut(s) 144, 676
NcoI CCATGG 1 cut(s) 360
NdeII GATC 5 cut(s) 40, 315, 399, 500, 612
NgoMIV GCCGGC 1 cut(s) 165
NlaIII CATG 4 cut(s) 364, 778, 823, 832
NlaIV GGNNCC 6 cut(s) 54, 62, 290, 502, 528, 630
NmeAIII GCCGAG 2 cut(s) 621, 716
NspV TTCGAA 1 cut(s) 254
PaqCI CACCTGC 1 cut(s) 538
PcsI WCGNNNNNNNCGW 1 cut(s) 311
PctI GAATGC 1 cut(s) 250
PdiI GCCGGC 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 11, 139
Pfl23II CGTACG 1 cut(s) 302
PflFI GACNNNGTC 3 cut(s) 374, 586, 649
Ple19I CGATCG 1 cut(s) 402
PleI GAGTC 5 cut(s) 509, 595, 631, 640, 679
PpsI GAGTC 5 cut(s) 509, 595, 631, 640, 679
Psp6I CCWGG 2 cut(s) 284, 658
PspGI CCWGG 2 cut(s) 284, 658
PspLI CGTACG 1 cut(s) 302
PspN4I GGNNCC 6 cut(s) 54, 62, 290, 502, 528, 630
PspPI GGNCC 4 cut(s) 53, 150, 273, 764
PstI CTGCAG 1 cut(s) 535
PsuI RGATCY 1 cut(s) 500
PsyI GACNNNGTC 3 cut(s) 374, 586, 649
PvuI CGATCG 1 cut(s) 402
RsaI GTAC 3 cut(s) 260, 304, 353
RsaNI GTAC 3 cut(s) 259, 303, 352
Rsr2I CGGWCCG 1 cut(s) 150
RsrII CGGWCCG 1 cut(s) 150
SacII CCGCGG 1 cut(s) 475
SalI GTCGAC 1 cut(s) 634
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 5 cut(s) 40, 315, 399, 500, 612
Sau96I GGNCC 4 cut(s) 53, 150, 273, 764
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 5 cut(s) 509, 596, 631, 640, 679
ScrFI CCNGG 4 cut(s) 144, 286, 660, 676
SduI GDGCHC 3 cut(s) 65, 207, 494
SetI ASST 8 cut(s) 93, 201, 432, 552, 661, 710, 810, 861
SfaNI GCATC 1 cut(s) 418
SfcI CTRYAG 1 cut(s) 531
Sfr303I CCGCGG 1 cut(s) 475
SfuI TTCGAA 1 cut(s) 254
SgrBI CCGCGG 1 cut(s) 475
SinI GGWCC 1 cut(s) 150
StyD4I CCNGG 4 cut(s) 142, 284, 658, 674
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 3 cut(s) 457, 482, 836
TaiI ACGT 1 cut(s) 710
TaqI TCGA 6 cut(s) 137, 254, 398, 402, 635, 671
TatI WGTACW 1 cut(s) 351
TauI GCSGC 7 cut(s) 25, 103, 245, 248, 387, 474, 595
TfiI GAWTC 2 cut(s) 11, 139
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 4 cut(s) 332, 540, 567, 579
TseI GCWGC 5 cut(s) 97, 715, 718, 721, 724
TspDTI ATGAA 4 cut(s) 636, 763, 845, 852
TspGWI ACGGA 2 cut(s) 320, 599
TspRI CASTG 4 cut(s) 332, 540, 567, 579
Tth111I GACNNNGTC 3 cut(s) 374, 586, 649
VpaK11BI GGWCC 1 cut(s) 150
XmiI GTMKAC 2 cut(s) 635, 850
XmnI GAANNNNTTC 1 cut(s) 15
ZraI GACGTC 1 cut(s) 708
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.