Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012334

Physical Location & Seq

Genomic Coordinates Reverse (-)

15550730 .. 15553387

Gene Structure 2658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G134800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTCGTCGGGCGGACCCAAAGACGGGGACTTGCAACTGGTGGCGGCGCCTGAAAGGAAATTAGCGCTACCGCCAAAGCCACCGACAACGGCCAGCTCGACGGCGCTTGTGGAGTATACGCCGCCTGTGTTCAAGGAGGAGGAAGAGGACCTTGAGATCAAGCTCCGGAGGATTCTGGAAAATGTCCCCGTCCGCGTCAGCAACACCTCAGGTAGCTCCGCCGGGTCGGGCTCCGGCGACTTTCATCAGTATCGGCAGATGAGACGGAAAGAGCAAGACAGACTTGCTAGGATGGAGGTGGACTATCAAAGAAGGAAAGAAGAGGCCGAGTTCATTATGAGAAGGGAGGAAAGATTAAAATCAGCAGAAGAGCGGACAGCAAAGAAGCGATTGAAACGTCAAAAGAAAAAGCAAAGGAAAAAGGAGAAGAAGATTAAAACGAGTTCAGGTGGCGAAGAGAATCATAAAGGAGAGACCACGGATGAGGATGAGGAGAACTCTGATGATCAAACTGAACAAGCTTTTGATAAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1168

Protein Analysis

179

Amino Acids

20.46

Weight (kDa)

8.96

Isoelectric Point (pI)

64.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15270 AT2G15270
fragaria_vesca	FvH4_2g05220
malus_domestica	MD05G1088900.v1.1 MD05G1089500.v1.1
prunus_persica	Prupe.8G134800_v2.0.a1
pyrus_communis	pycom05g08820 pycom10g08290
rosa_chinensis	RchiOBHm_Chr6g0255351
rosa_laevigata	RLG00000014845
rosa_multiflora	Rmu_sc0000903.1_g000034 Rmu_sc0002360.1_g000020
rosa_roxburghii	Rroxscaffold_7G00210060
rosa_rugosa	Rorug05G0557500 Rorug05G0557600
rosa_samantha	Rh6AG075700 Rh6BG067800 Rh6CG067600 Rh6DG064200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	46
AccBSI	CCGCTC	1 cut(s)	373
AccI	GTMKAC	1 cut(s)	116
AccII	CGCG	1 cut(s)	195
AccIII	TCCGGA	1 cut(s)	165
AciI	CCGC	7 cut(s)	12, 44, 71, 122, 193, 219, 373
AcoI	YGGCCR	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	47
AfeI	AGCGCT	1 cut(s)	66
AfiI	CCNNNNNNNGG	2 cut(s)	23, 24
AgsI	TTSAA	2 cut(s)	133, 394
AluBI	AGCT	5 cut(s)	96, 163, 216, 521, 532
AluI	AGCT	5 cut(s)	96, 163, 216, 521, 532
Alw26I	GTCTC	2 cut(s)	256, 467
Aor13HI	TCCGGA	1 cut(s)	165
Aor51HI	AGCGCT	1 cut(s)	66
AoxI	GGCC	2 cut(s)	90, 324
AspLEI	GCGC	3 cut(s)	49, 67, 106
AspS9I	GGNCC	2 cut(s)	14, 148
AsuC2I	CCSGG	1 cut(s)	223
AvaII	GGWCC	2 cut(s)	14, 148
AxyI	CCTNAGG	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	233
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	2 cut(s)	105, 117
BclI	TGATCA	1 cut(s)	505
BcnI	CCSGG	1 cut(s)	223
BcoDI	GTCTC	2 cut(s)	256, 467
BfaI	CTAG	1 cut(s)	288
BfoI	RGCGCY	3 cut(s)	50, 68, 107
BisI	GCNGC	2 cut(s)	45, 122
BlsI	GCNGC	2 cut(s)	46, 123
Bme1390I	CCNGG	1 cut(s)	223
Bme18I	GGWCC	2 cut(s)	14, 148
BmgT120I	GGNCC	2 cut(s)	14, 148
BmiI	GGNNCC	3 cut(s)	16, 48, 232
BmrFI	CCNGG	1 cut(s)	223
BplI	GAGNNNNNCTC	2 cut(s)	482, 514
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	223
BsaBI	GATNNNNATC	1 cut(s)	358
BsaHI	GRCGYC	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	477
BsaWI	WCCGGW	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 24
Bse1I	ACTGG	1 cut(s)	42
Bse21I	CCTNAGG	1 cut(s)	208
Bse8I	GATNNNNATC	1 cut(s)	358
BseAI	TCCGGA	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	477
BseGI	GGATG	3 cut(s)	297, 487, 493
BseJI	GATNNNNATC	1 cut(s)	358
BseLI	CCNNNNNNNGG	2 cut(s)	23, 24
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	42
BseRI	GAGGAG	2 cut(s)	152, 506
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	92, 326
BshNI	GGYRCC	1 cut(s)	46
BsiSI	CCGG	3 cut(s)	166, 222, 234
BslFI	GGGAC	2 cut(s)	41, 170
BslI	CCNNNNNNNGG	2 cut(s)	23, 24
BsmAI	GTCTC	2 cut(s)	256, 467
BsmBI	CGTCTC	1 cut(s)	256
BsmFI	GGGAC	2 cut(s)	41, 170
BsnI	GGCC	2 cut(s)	92, 326
Bso31I	GGTCTC	1 cut(s)	467
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp13I	TCCGGA	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	156, 505
BspACI	CCGC	7 cut(s)	12, 44, 71, 122, 193, 219, 373
BspANI	GGCC	2 cut(s)	92, 326
BspCNI	CTCAG	1 cut(s)	221
BspEI	TCCGGA	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	3 cut(s)	16, 48, 232
BspQI	GCTCTTC	1 cut(s)	363
BspT107I	GGYRCC	1 cut(s)	46
BspTNI	GGTCTC	1 cut(s)	467
BsrBI	CCGCTC	1 cut(s)	373
BsrI	ACTGG	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	477
BssMI	GATC	2 cut(s)	156, 505
BssNAI	GTATAC	1 cut(s)	117
BssNI	GRCGYC	1 cut(s)	47
Bst1107I	GTATAC	1 cut(s)	117
Bst6I	CTCTTC	4 cut(s)	138, 315, 363, 450
BstACI	GRCGYC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	208
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	3 cut(s)	297, 487, 493
BstFNI	CGCG	1 cut(s)	195
BstH2I	RGCGCY	3 cut(s)	50, 68, 107
BstHHI	GCGC	3 cut(s)	49, 67, 106
BstKTI	GATC	2 cut(s)	159, 508
BstMAI	GTCTC	2 cut(s)	256, 467
BstMBI	GATC	2 cut(s)	156, 505
BstSCI	CCNGG	1 cut(s)	221
BstUI	CGCG	1 cut(s)	195
BstZ17I	GTATAC	1 cut(s)	117
Bsu36I	CCTNAGG	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	92, 326
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	3 cut(s)	297, 487, 493
Cac8I	GCNNGC	1 cut(s)	94
CfoI	GCGC	3 cut(s)	49, 67, 106
Cfr13I	GGNCC	2 cut(s)	14, 148
CseI	GACGC	1 cut(s)	184
CviJI	RGCY	9 cut(s)	79, 92, 96, 163, 216, 231, 326, 521, 532
CviKI_1	RGCY	9 cut(s)	79, 92, 96, 163, 216, 231, 326, 521, 532
DdeI	CTNAG	1 cut(s)	208
DinI	GGCGCC	1 cut(s)	48
DpnI	GATC	2 cut(s)	158, 507
DpnII	GATC	2 cut(s)	156, 505
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	4 cut(s)	138, 315, 363, 450
EarI	CTCTTC	4 cut(s)	138, 315, 363, 450
EciI	GGCGGA	2 cut(s)	27, 208
Eco24I	GRGCYC	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	467
Eco47I	GGWCC	2 cut(s)	14, 148
Eco47III	AGCGCT	1 cut(s)	66
Eco81I	CCTNAGG	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	233
EgeI	GGCGCC	1 cut(s)	48
EheI	GGCGCC	1 cut(s)	48
Esp3I	CGTCTC	1 cut(s)	256
FaiI	YATR	4 cut(s)	117, 338, 465, 535
FalI	AAGNNNNNCTT	4 cut(s)	135, 167, 267, 299
FaqI	GGGAC	2 cut(s)	41, 170
FbaI	TGATCA	1 cut(s)	505
FblI	GTMKAC	1 cut(s)	116
Fnu4HI	GCNGC	2 cut(s)	45, 122
FokI	GGATG	3 cut(s)	304, 494, 500
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	2 cut(s)	45, 122
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	3 cut(s)	48, 66, 105
GluI	GCNGC	2 cut(s)	45, 122
HaeII	RGCGCY	3 cut(s)	50, 68, 107
HaeIII	GGCC	2 cut(s)	92, 326
HapII	CCGG	3 cut(s)	166, 222, 234
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	3 cut(s)	49, 67, 106
Hin1I	GRCGYC	1 cut(s)	47
Hin6I	GCGC	3 cut(s)	47, 65, 104
HinP1I	GCGC	3 cut(s)	47, 65, 104
HindIII	AAGCTT	1 cut(s)	519
HinfI	GANTC	2 cut(s)	172, 460
HpaII	CCGG	3 cut(s)	166, 222, 234
Hpy166II	GTNNAC	2 cut(s)	117, 301
Hpy188I	TCNGA	1 cut(s)	502
Hpy188III	TCNNGA	2 cut(s)	166, 176
Hpy8I	GTNNAC	2 cut(s)	117, 301
Hpy99I	CGWCG	2 cut(s)	10, 103
HpyAV	CCTTC	2 cut(s)	306, 336
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	1 cut(s)	34
HpyF3I	CTNAG	1 cut(s)	208
HpySE526I	ACGT	1 cut(s)	397
Hsp92I	GRCGYC	1 cut(s)	47
HspAI	GCGC	3 cut(s)	47, 65, 104
KasI	GGCGCC	1 cut(s)	46
Kpn2I	TCCGGA	1 cut(s)	165
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	2 cut(s)	156, 505
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	3 cut(s)	168, 221, 236
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	1 cut(s)	397
MalI	GATC	2 cut(s)	158, 507
MbiI	CCGCTC	1 cut(s)	373
MboI	GATC	2 cut(s)	156, 505
MboII	GAAGA	6 cut(s)	155, 332, 380, 439, 442, 467
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	1 cut(s)	59
Mly113I	GGCGCC	1 cut(s)	47
MroI	TCCGGA	1 cut(s)	165
MseI	TTAA	2 cut(s)	356, 435
MspI	CCGG	3 cut(s)	166, 222, 234
MspR9I	CCNGG	1 cut(s)	223
MvnI	CGCG	1 cut(s)	195
NarI	GGCGCC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	223
NdeII	GATC	2 cut(s)	156, 505
NlaIV	GGNNCC	3 cut(s)	16, 48, 232
NmeAIII	GCCGAG	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	1 cut(s)	95
PfeI	GAWTC	2 cut(s)	172, 460
PkrI	GCNGC	2 cut(s)	46, 123
PluTI	GGCGCC	1 cut(s)	50
PpuMI	RGGWCCY	1 cut(s)	148
Psp5II	RGGWCCY	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	16, 48, 232
PspPI	GGNCC	2 cut(s)	14, 148
PspPPI	RGGWCCY	1 cut(s)	148
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	356, 435
SatI	GCNGC	2 cut(s)	45, 122
Sau3AI	GATC	2 cut(s)	156, 505
Sau96I	GGNCC	2 cut(s)	14, 148
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	233
SfoI	GGCGCC	1 cut(s)	48
SinI	GGWCC	2 cut(s)	14, 148
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	7 cut(s)	12, 44, 71, 122, 193, 219, 373
SspDI	GGCGCC	1 cut(s)	46
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	221
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	1 cut(s)	98
TasI	AATT	1 cut(s)	59
TauI	GCSGC	2 cut(s)	47, 124
TfiI	GAWTC	2 cut(s)	172, 460
Tru1I	TTAA	2 cut(s)	356, 435
Tru9I	TTAA	2 cut(s)	356, 435
TspDTI	ATGAA	2 cut(s)	233, 322
TspGWI	ACGGA	2 cut(s)	280, 494
VpaK11BI	GGWCC	2 cut(s)	14, 148
XmiI	GTMKAC	1 cut(s)	116
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.