Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012334

Physical Location & Seq

Genomic Coordinates Reverse (-)

10808788 .. 10811315

Gene Structure 2528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g08290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTTGTTGGGCAGACCCAAAGACGGGGACATGCAACTGGTGGCGGGGCCGGAGAGGAAACAAGCCCAGGGGCCTGACAGGAAACTAATGCTACCGTCTAGGCCACCGACTGCAGCTGGTTCGACGGCGCTTGTGGAGTATACGCCGCCTGTGTTCAAGGAGGAGGAAGATGACCTCAAGATCAATCCTATCCGGAGGATTCTCGAAAATTTCCCGGTTCGCGTCAGTAACACCTCCGGTAGCTCCGCCGATCCGGCTCTGGCGACTTCCATCAGTATCAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1168

Protein Analysis

96

Amino Acids

10.27

Weight (kDa)

8.07

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15270 AT2G15270
fragaria_vesca	FvH4_2g05220
malus_domestica	MD05G1088900.v1.1 MD05G1089500.v1.1
prunus_persica	Prupe.8G134800_v2.0.a1
pyrus_communis	pycom05g08820 pycom10g08290
rosa_chinensis	RchiOBHm_Chr6g0255351
rosa_laevigata	RLG00000014845
rosa_multiflora	Rmu_sc0000903.1_g000034 Rmu_sc0002360.1_g000020
rosa_roxburghii	Rroxscaffold_7G00210060
rosa_rugosa	Rorug05G0557500 Rorug05G0557600
rosa_samantha	Rh6AG075700 Rh6BG067800 Rh6CG067600 Rh6DG064200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	140
AccII	CGCG	1 cut(s)	222
AccIII	TCCGGA	1 cut(s)	192
AciI	CCGC	3 cut(s)	44, 146, 246
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	1 cut(s)	208
AfiI	CCNNNNNNNGG	2 cut(s)	23, 24
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	2 cut(s)	116, 243
AluI	AGCT	2 cut(s)	116, 243
AlwI	GGATC	1 cut(s)	245
Aor13HI	TCCGGA	1 cut(s)	192
AoxI	GGCC	3 cut(s)	47, 71, 101
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	2 cut(s)	47, 71
AsuC2I	CCSGG	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	1 cut(s)	141
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BciT130I	CCWGG	1 cut(s)	68
BcnI	CCSGG	1 cut(s)	215
BfaI	CTAG	1 cut(s)	99
BfmI	CTRYAG	1 cut(s)	111
BfoI	RGCGCY	1 cut(s)	131
BglI	GCCNNNNNGGC	1 cut(s)	254
BisI	GCNGC	2 cut(s)	114, 146
BlsI	GCNGC	2 cut(s)	115, 147
Bme1390I	CCNGG	2 cut(s)	68, 215
BmgT120I	GGNCC	2 cut(s)	47, 71
BmiI	GGNNCC	2 cut(s)	48, 72
BmrFI	CCNGG	2 cut(s)	68, 215
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	66, 67
BsaWI	WCCGGW	2 cut(s)	192, 236
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 24
Bse1I	ACTGG	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	2 cut(s)	66, 67
BseLI	CCNNNNNNNGG	2 cut(s)	23, 24
BseNI	ACTGG	1 cut(s)	42
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	49, 73, 103
BsiSI	CCGG	5 cut(s)	50, 193, 215, 237, 254
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	23, 24
BsmFI	GGGAC	1 cut(s)	41
BsnI	GGCC	3 cut(s)	49, 73, 103
Bsp13I	TCCGGA	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	180, 250
BspACI	CCGC	3 cut(s)	44, 146, 246
BspANI	GGCC	3 cut(s)	49, 73, 103
BspEI	TCCGGA	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	48, 72
BspMAI	CTGCAG	1 cut(s)	115
BspPI	GGATC	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	42
BssECI	CCNNGG	2 cut(s)	66, 67
BssMI	GATC	2 cut(s)	180, 250
BssNAI	GTATAC	1 cut(s)	141
Bst1107I	GTATAC	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	96
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	2 cut(s)	183, 253
BstMBI	GATC	2 cut(s)	180, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	68
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	2 cut(s)	66, 213
BstSFI	CTRYAG	1 cut(s)	111
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	125
BstZ17I	GTATAC	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	49, 73, 103
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	47, 71
CseI	GACGC	1 cut(s)	211
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	7 cut(s)	49, 65, 73, 103, 116, 243, 257
CviKI_1	RGCY	7 cut(s)	49, 65, 73, 103, 116, 243, 257
DpnI	GATC	2 cut(s)	182, 252
DpnII	GATC	2 cut(s)	180, 250
EciI	GGCGGA	1 cut(s)	235
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	66
FaeI	CATG	1 cut(s)	34
FaiI	YATR	2 cut(s)	32, 141
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	1 cut(s)	30
FauI	CCCGC	1 cut(s)	37
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	2 cut(s)	114, 146
Fsp4HI	GCNGC	2 cut(s)	114, 146
FspBI	CTAG	1 cut(s)	99
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	2 cut(s)	114, 146
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	3 cut(s)	49, 73, 103
HapII	CCGG	5 cut(s)	50, 193, 215, 237, 254
HgaI	GACGC	1 cut(s)	211
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	1 cut(s)	199
HpaII	CCGG	5 cut(s)	50, 193, 215, 237, 254
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188III	TCNNGA	3 cut(s)	178, 193, 203
Hpy8I	GTNNAC	1 cut(s)	141
Hpy99I	CGWCG	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4V	TGCA	2 cut(s)	34, 113
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	1 cut(s)	128
Kpn2I	TCCGGA	1 cut(s)	192
Kzo9I	GATC	2 cut(s)	180, 250
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	1 cut(s)	125
MaeI	CTAG	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	2 cut(s)	182, 252
MboI	GATC	2 cut(s)	180, 250
MboII	GAAGA	1 cut(s)	179
MluCI	AATT	1 cut(s)	208
MnlI	CCTC	6 cut(s)	48, 154, 157, 185, 189, 244
MroI	TCCGGA	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	5 cut(s)	50, 193, 215, 237, 254
MspR9I	CCNGG	2 cut(s)	68, 215
MvaI	CCWGG	1 cut(s)	68
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	254
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	2 cut(s)	180, 250
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	2 cut(s)	48, 72
NspI	RCATGY	1 cut(s)	34
PasI	CCCWGGG	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	2 cut(s)	115, 147
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	2 cut(s)	48, 72
PspPI	GGNCC	2 cut(s)	47, 71
PstI	CTGCAG	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	116
SatI	GCNGC	2 cut(s)	114, 146
Sau3AI	GATC	2 cut(s)	180, 250
Sau96I	GGNCC	2 cut(s)	47, 71
ScrFI	CCNGG	2 cut(s)	68, 215
SetI	ASST	4 cut(s)	118, 177, 236, 245
SfcI	CTRYAG	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	208
SsiI	CCGC	3 cut(s)	44, 146, 246
SspMI	CTAG	1 cut(s)	99
StyD4I	CCNGG	2 cut(s)	66, 213
TaaI	ACNGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	122, 204
TasI	AATT	1 cut(s)	208
TauI	GCSGC	1 cut(s)	148
TfiI	GAWTC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	208
XceI	RCATGY	1 cut(s)	34
XmiI	GTMKAC	1 cut(s)	140
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.