Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013039

Physical Location & Seq

Genomic Coordinates Reverse (-)

6642300 .. 6644055

Gene Structure 1756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G15290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCAATCACTACTCTTGCCGCCGGCGAGTTCCTCCGGCGTATCCGCCGTCGCGCTACGGCCAGGTTTCCAGCACTCATTTAACCACCAAAGCCTCTCTACTCGCTCCCTGCCATTGTTTAATCCACTTCTCTTAGCTCCGAAGAAGAAAACCACCATCTCCTCATATCAATCGCCACCGTCTCTGTCCGTCTACGGTTTCCAAATCGGAGGATCTAAACCTAGTTTCACACCATCCACGGTGGCATTTTCATATCCGACTTCTCCGTCTTCCGTTCCCGGTGATAATGAGGTCGACAAAGCAAAACTCGCTCAGGTTGCAAAGAGATTGGAGAAGACTTCAAGGTACTTTAAGAGACTAGGGAGTATTGGTTTCTGGGGGCAGCTTGTGTCAACTGTGGTTGCAGCTGTGATTCTATCCTTCTCCATTGTTGTAACTGGGAAACCTACTTCACCTGCTACTTTCTATGCTACTGCTAGTGGGATTGCTGCTGCGTTTGTCTCGGTTTTCTGGTCGTTTGGGTATATTCGGCTCTCCGAGAGGCTCCGTCGAACTTCCATCGACCCTGCCAAGGCGCCGCCTCGCGCTGATGTTGTGAAAGGTTTGAGGAGCGGGATTATGGTAAATATTTTGGGAATGGGATCAGCACTACTCGGGATGCAAGCAACAGTTGGATTTTTAGTTGCAAAGGCTTTAACAACTTCAGCAAACCCTTTCTACCAAGGAGTCTCTCAGGGATACAGTCCCGTTCTTGCTCTTGATGTCTTCCTAGTTCAGGCATCGGCGAACACCTTACTCTCTCATTTCCTTGGTCTTGTTTGCTCGTTGGAGCTGTTGCGGTCTGTGACAGTGCCCAATTCGGAATCTGTCGTAGTTCCTAAGGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006873 GO:0006875 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019725 GO:0019866 GO:0030003 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042592 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055080 GO:0055082 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3611

Protein Analysis

296

Amino Acids

31.28

Weight (kDa)

10.23

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3611	PF12263	108 - 282	3.6e-53	Protein of unknown function (DUF3611)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15290
fragaria_vesca	FvH4_2g05240
malus_domestica	MD05G1088600.v1.1 MD10G1096700.v1.1
prunus_persica	Prupe.8G134600_v2.0.a1 Prupe.8G134600_v2.0.a1
pyrus_communis	pycom05g08800 pycom10g08280
rosa_chinensis	RchiOBHm_Chr6g0255371
rosa_laevigata	RLG00000014843
rosa_multiflora	Rmu_co8499097.1_g000001 Rmu_sc0002360.1_g000018
rosa_roxburghii	Rroxscaffold_7G00210040
rosa_rugosa	Rorug05G0557700
rosa_samantha	Rh6AG075500 Rh6BG068100 Rh6CG067800 Rh6DG064400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	463
AasI	GACNNNNNNGTC	1 cut(s)	265
Acc36I	ACCTGC	1 cut(s)	463
AccB1I	GGYRCC	1 cut(s)	574
AccBSI	CCGCTC	1 cut(s)	612
AccI	GTMKAC	2 cut(s)	192, 294
AccII	CGCG	2 cut(s)	53, 585
AciI	CCGC	5 cut(s)	20, 45, 578, 612, 838
AclWI	GGATC	2 cut(s)	220, 649
AcoI	YGGCCR	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	687
AcyI	GRCGYC	1 cut(s)	575
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	2 cut(s)	571, 775
AgsI	TTSAA	1 cut(s)	342
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	4 cut(s)	137, 385, 407, 832
AluI	AGCT	4 cut(s)	137, 385, 407, 832
Alw26I	GTCTC	4 cut(s)	186, 349, 505, 733
AlwI	GGATC	2 cut(s)	220, 649
Ama87I	CYCGRG	1 cut(s)	653
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	4 cut(s)	382, 404, 488, 491
AspLEI	GCGC	3 cut(s)	55, 577, 587
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	293, 444
AvaI	CYCGRG	1 cut(s)	653
AxyI	CCTNAGG	1 cut(s)	879
BaeGI	GKGCMC	1 cut(s)	855
BanI	GGYRCC	1 cut(s)	574
BbsI	GAAGAC	3 cut(s)	261, 341, 757
BbvI	GCAGC	4 cut(s)	394, 416, 475, 478
BccI	CCATC	3 cut(s)	164, 241, 566
BceAI	ACGGC	2 cut(s)	32, 74
BciT130I	CCWGG	1 cut(s)	63
BciVI	GTATCC	2 cut(s)	52, 731
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	4 cut(s)	186, 349, 505, 733
BfaI	CTAG	4 cut(s)	222, 359, 477, 770
BfoI	RGCGCY	1 cut(s)	578
BfuAI	ACCTGC	1 cut(s)	463
BfuI	GTATCC	2 cut(s)	52, 731
BisI	GCNGC	6 cut(s)	20, 383, 405, 489, 492, 578
BlsI	GCNGC	6 cut(s)	21, 384, 406, 490, 493, 579
Bme1390I	CCNGG	2 cut(s)	63, 279
BmeT110I	CYCGRG	1 cut(s)	653
BmiI	GGNNCC	2 cut(s)	545, 576
BmrFI	CCNGG	2 cut(s)	63, 279
BmrI	ACTGGG	1 cut(s)	447
BmsI	GCATC	2 cut(s)	648, 788
BmuI	ACTGGG	1 cut(s)	447
BpiI	GAAGAC	3 cut(s)	261, 341, 757
Bpu10I	CCTNAGC	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	575
BsaJI	CCNNGG	4 cut(s)	237, 570, 721, 808
BsaXI	ACNNNNNCTCC	2 cut(s)	355, 385
Bsc4I	CCNNNNNNNGG	2 cut(s)	571, 775
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	442
Bse21I	CCTNAGG	1 cut(s)	879
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	4 cut(s)	237, 570, 721, 808
BseGI	GGATG	2 cut(s)	233, 663
BseLI	CCNNNNNNNGG	2 cut(s)	571, 775
BseMII	CTCAG	2 cut(s)	326, 746
BseNI	ACTGG	1 cut(s)	442
BseRI	GAGGAG	2 cut(s)	151, 622
BseSI	GKGCMC	1 cut(s)	855
BseXI	GCAGC	4 cut(s)	394, 416, 475, 478
Bsh1236I	CGCG	2 cut(s)	53, 585
BshFI	GGCC	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	574
BsiHKCI	CYCGRG	1 cut(s)	653
BsiSI	CCGG	3 cut(s)	23, 36, 279
BslFI	GGGAC	1 cut(s)	729
BslI	CCNNNNNNNGG	2 cut(s)	571, 775
BsmAI	GTCTC	4 cut(s)	186, 349, 505, 733
BsmBI	CGTCTC	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	729
BsnI	GGCC	1 cut(s)	61
BsoBI	CYCGRG	1 cut(s)	653
Bsp1286I	GDGCHC	1 cut(s)	855
Bsp143I	GATC	2 cut(s)	212, 641
BspACI	CCGC	5 cut(s)	20, 45, 578, 612, 838
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	2 cut(s)	325, 745
BspFNI	CGCG	2 cut(s)	53, 585
BspLI	GGNNCC	2 cut(s)	545, 576
BspMI	ACCTGC	1 cut(s)	463
BspPI	GGATC	2 cut(s)	220, 649
BspT107I	GGYRCC	1 cut(s)	574
BsrBI	CCGCTC	1 cut(s)	612
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	442
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	4 cut(s)	237, 570, 721, 808
BssMI	GATC	2 cut(s)	212, 641
BssNI	GRCGYC	1 cut(s)	575
BssT1I	CCWWGG	3 cut(s)	570, 721, 808
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	7 cut(s)	180, 197, 241, 397, 670, 743, 850
BstACI	GRCGYC	1 cut(s)	575
BstC8I	GCNNGC	2 cut(s)	24, 663
BstDEI	CTNAG	4 cut(s)	133, 312, 732, 879
BstDSI	CCRYGG	1 cut(s)	237
BstENI	CCTNNNNNAGG	1 cut(s)	773
BstF5I	GGATG	2 cut(s)	233, 663
BstFNI	CGCG	2 cut(s)	53, 585
BstH2I	RGCGCY	1 cut(s)	578
BstHHI	GCGC	3 cut(s)	55, 577, 587
BstKTI	GATC	2 cut(s)	215, 644
BstMAI	GTCTC	4 cut(s)	186, 349, 505, 733
BstMBI	GATC	2 cut(s)	212, 641
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 317
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	2 cut(s)	61, 277
BstSLI	GKGCMC	1 cut(s)	855
BstUI	CGCG	2 cut(s)	53, 585
BstV1I	GCAGC	4 cut(s)	394, 416, 475, 478
BstV2I	GAAGAC	3 cut(s)	261, 341, 757
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
Bsu36I	CCTNAGG	1 cut(s)	879
BsuI	GTATCC	2 cut(s)	52, 731
BsuRI	GGCC	1 cut(s)	61
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	2 cut(s)	233, 663
BtsIMutI	CAGTG	1 cut(s)	855
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	2 cut(s)	24, 663
CfoI	GCGC	3 cut(s)	55, 577, 587
Cfr10I	RCCGGY	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	346
CviJI	RGCY	9 cut(s)	61, 93, 137, 385, 407, 532, 544, 692, 832
CviKI_1	RGCY	9 cut(s)	61, 93, 137, 385, 407, 532, 544, 692, 832
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	4 cut(s)	133, 312, 732, 879
DinI	GGCGCC	1 cut(s)	576
DpnI	GATC	2 cut(s)	214, 643
DpnII	GATC	2 cut(s)	212, 641
DrdI	GACNNNNNNGTC	1 cut(s)	265
DseDI	GACNNNNNNGTC	1 cut(s)	265
EaeI	YGGCCR	1 cut(s)	59
EciI	GGCGGA	1 cut(s)	34
Eco130I	CCWWGG	3 cut(s)	570, 721, 808
Eco57I	CTGAAG	1 cut(s)	687
Eco81I	CCTNAGG	1 cut(s)	879
Eco88I	CYCGRG	1 cut(s)	653
EcoNI	CCTNNNNNAGG	1 cut(s)	773
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	3 cut(s)	570, 721, 808
EgeI	GGCGCC	1 cut(s)	576
EheI	GGCGCC	1 cut(s)	576
ErhI	CCWWGG	3 cut(s)	570, 721, 808
Esp3I	CGTCTC	1 cut(s)	186
FaiI	YATR	5 cut(s)	166, 253, 468, 525, 620
FaqI	GGGAC	1 cut(s)	729
FauI	CCCGC	1 cut(s)	605
FblI	GTMKAC	2 cut(s)	192, 294
Fnu4HI	GCNGC	6 cut(s)	20, 383, 405, 489, 492, 578
FokI	GGATG	2 cut(s)	220, 670
Fsp4HI	GCNGC	6 cut(s)	20, 383, 405, 489, 492, 578
FspBI	CTAG	4 cut(s)	222, 359, 477, 770
GlaI	GCGC	3 cut(s)	54, 576, 586
GluI	GCNGC	6 cut(s)	20, 383, 405, 489, 492, 578
HaeII	RGCGCY	1 cut(s)	578
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	3 cut(s)	23, 36, 279
HhaI	GCGC	3 cut(s)	55, 577, 587
Hin1I	GRCGYC	1 cut(s)	575
Hin6I	GCGC	3 cut(s)	53, 575, 585
HinP1I	GCGC	3 cut(s)	53, 575, 585
HincII	GTYRAC	2 cut(s)	295, 393
HindII	GTYRAC	2 cut(s)	295, 393
HinfI	GANTC	3 cut(s)	412, 726, 863
HpaII	CCGG	3 cut(s)	23, 36, 279
HphI	GGTGA	2 cut(s)	293, 444
Hpy166II	GTNNAC	3 cut(s)	193, 295, 393
Hpy188I	TCNGA	5 cut(s)	141, 209, 258, 538, 862
Hpy188III	TCNNGA	2 cut(s)	655, 758
Hpy8I	GTNNAC	3 cut(s)	193, 295, 393
Hpy99I	CGWCG	2 cut(s)	53, 552
HpyAV	CCTTC	1 cut(s)	430
HpyCH4III	ACNGT	7 cut(s)	180, 197, 241, 397, 670, 743, 850
HpyCH4V	TGCA	5 cut(s)	4, 320, 404, 661, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 317
HpyF3I	CTNAG	4 cut(s)	133, 312, 732, 879
Hsp92I	GRCGYC	1 cut(s)	575
HspAI	GCGC	3 cut(s)	53, 575, 585
KasI	GGCGCC	1 cut(s)	574
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	212, 641
LmnI	GCTCC	5 cut(s)	110, 142, 549, 609, 829
Lsp1109I	GCAGC	4 cut(s)	394, 416, 475, 478
LweI	GCATC	2 cut(s)	648, 788
MaeI	CTAG	4 cut(s)	222, 359, 477, 770
MaeIII	GTNAC	2 cut(s)	433, 844
MalI	GATC	2 cut(s)	214, 643
MbiI	CCGCTC	1 cut(s)	612
MboI	GATC	2 cut(s)	212, 641
MboII	GAAGA	5 cut(s)	154, 157, 261, 346, 757
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	855
MluCI	AATT	1 cut(s)	856
Mly113I	GGCGCC	1 cut(s)	575
MlyI	GAGTC	1 cut(s)	735
MmeI	TCCRAC	3 cut(s)	281, 652, 807
MnlI	CCTC	8 cut(s)	43, 104, 172, 203, 283, 534, 591, 600
MreI	CGCCGGCG	1 cut(s)	22
MroNI	GCCGGC	1 cut(s)	22
MseI	TTAA	4 cut(s)	81, 120, 351, 695
MspA1I	CMGCKG	1 cut(s)	407
MspI	CCGG	3 cut(s)	23, 36, 279
MspR9I	CCNGG	2 cut(s)	63, 279
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	2 cut(s)	53, 585
MwoI	GCNNNNNNNGC	2 cut(s)	308, 317
NaeI	GCCGGC	1 cut(s)	24
NarI	GGCGCC	1 cut(s)	575
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	2 cut(s)	212, 641
NgoMIV	GCCGGC	1 cut(s)	22
NlaIV	GGNNCC	2 cut(s)	545, 576
NmuCI	GTSAC	1 cut(s)	844
PaqCI	CACCTGC	1 cut(s)	463
PdiI	GCCGGC	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	412, 863
PkrI	GCNGC	6 cut(s)	21, 384, 406, 490, 493, 579
PleI	GAGTC	1 cut(s)	734
PluTI	GGCGCC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	734
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	545, 576
PsuI	RGATCY	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SalI	GTCGAC	1 cut(s)	293
SaqAI	TTAA	4 cut(s)	81, 120, 351, 695
SatI	GCNGC	6 cut(s)	20, 383, 405, 489, 492, 578
Sau3AI	GATC	2 cut(s)	212, 641
SchI	GAGTC	1 cut(s)	735
ScrFI	CCNGG	2 cut(s)	63, 279
SduI	GDGCHC	1 cut(s)	855
SfaNI	GCATC	2 cut(s)	648, 788
SfoI	GGCGCC	1 cut(s)	576
SgrAI	CRCCGGYG	1 cut(s)	22
Sse9I	AATT	1 cut(s)	856
SsiI	CCGC	5 cut(s)	20, 45, 578, 612, 838
SspDI	GGCGCC	1 cut(s)	574
SspI	AATATT	1 cut(s)	628
SspMI	CTAG	4 cut(s)	222, 359, 477, 770
StyD4I	CCNGG	2 cut(s)	61, 277
StyI	CCWWGG	3 cut(s)	570, 721, 808
TaaI	ACNGT	7 cut(s)	180, 197, 241, 397, 670, 743, 850
TaqI	TCGA	3 cut(s)	294, 550, 561
TasI	AATT	1 cut(s)	856
TauI	GCSGC	2 cut(s)	22, 580
TfiI	GAWTC	2 cut(s)	412, 863
Tru1I	TTAA	4 cut(s)	81, 120, 351, 695
Tru9I	TTAA	4 cut(s)	81, 120, 351, 695
TscAI	CASTG	1 cut(s)	855
TseFI	GTSAC	1 cut(s)	844
TseI	GCWGC	4 cut(s)	382, 404, 488, 491
Tsp45I	GTSAC	1 cut(s)	844
TspDTI	ATGAA	1 cut(s)	240
TspGWI	ACGGA	4 cut(s)	178, 255, 262, 536
TspRI	CASTG	1 cut(s)	855
XagI	CCTNNNNNAGG	1 cut(s)	773
XmiI	GTMKAC	2 cut(s)	192, 294
XspI	CTAG	4 cut(s)	222, 359, 477, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.