Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0013039

Physical Location & Seq

Genomic Coordinates Forward (+)

10799764 .. 10801724

Gene Structure 1961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g08280.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCCCTCATCAGCTCCCCAAACTCAGTACGACAGCAAAAAAACAGTTCCCACACACTCTCCCTCCCCCTCTCCTTCTGCTAACCGTTTTATTATGCAAACTCTACTATCGCCGGTGACACGCGCCGCCTACTTGACGGCGGCGCCACCTACAGCTGTCACGACTCGGCCCTTAGCGTATCACGTTCCTCTTCGATCAATCTCCGACCGCCACGTGCCCAGCCTCACTCTCTCTTCTTCGTTTTCTTCTTCGTATGCTGCTCCCACCCACAGAGGACCAAGGCTCTCCATCAGCACCATCAGGGCATCTTCCCCTCCAATTTCTCAGAACTTCACCTCCCCAAACGACGAAACTGAAAAGGCCAAGCTCCTTCAGGTAGCCAAAAGGTTAGAGAGCACAGCAAGGTATTTCAAGAGGTTGGGTAGTTTAGGGTTTTGGGGGCAGCTGGTCAGCACTGTTGTGGCGGCCGTGATTCTTTCGTTTTCAGTTGTTATAACCGGCAAGGTTTCGTCACCACCTACTTTTTATGCCACTGCCGGTGGGATTGTGGCGGGATTCATCTCTGTGTTTTGGTCATTTGGGTACATTCGCCTCTCGGATAAGCTTCGAAGAACTGCAAGTGACCCTGCAAAGGCTCCTCCACGCGCTGATGTTATAAAAAGCTTAAAGAATGGCATTGTTCTGAACATTTTGGGTATGGGTGCTGCTGTTCTTGGCATGCAAGCAACGGTAGGACTGTTGGTTGCTAAGGCTCTTACTTCCTCTGCAAATCCATATCAGGGTCTCACTCCAGCTTACAGTCCTGTTCTTGCCCTGGATGTATTCTTGGTGCAGGCATCGGCAAACACTATCCTTTCTCACTTCCTGGGACTTCTCTTCTCCCTAGAGCTGTTGCGCTCAGTAACGTTGCCACCTTCTGAAGGCATTCCCATTCCCAGATTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006873 GO:0006875 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019725 GO:0019866 GO:0030003 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042592 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055080 GO:0055082 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3611

Protein Analysis

316

Amino Acids

33.46

Weight (kDa)

10.45

Isoelectric Point (pI)

52.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15290
fragaria_vesca	FvH4_2g05240
malus_domestica	MD05G1088600.v1.1 MD10G1096700.v1.1
prunus_persica	Prupe.8G134600_v2.0.a1 Prupe.8G134600_v2.0.a1
pyrus_communis	pycom05g08800 pycom10g08280
rosa_chinensis	RchiOBHm_Chr6g0255371
rosa_laevigata	RLG00000014843
rosa_multiflora	Rmu_co8499097.1_g000001 Rmu_sc0002360.1_g000018
rosa_roxburghii	Rroxscaffold_7G00210040
rosa_rugosa	Rorug05G0557700
rosa_samantha	Rh6AG075500 Rh6BG068100 Rh6CG067800 Rh6DG064400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	494, 656
AccB1I	GGYRCC	1 cut(s)	142
AccII	CGCG	2 cut(s)	123, 645
AciI	CCGC	5 cut(s)	126, 140, 208, 464, 551
AclI	AACGTT	1 cut(s)	905
AcoI	YGGCCR	1 cut(s)	465
AcuI	CTGAAG	2 cut(s)	356, 939
AcvI	CACGTG	1 cut(s)	214
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	2 cut(s)	29, 584
AfiI	CCNNNNNNNGG	3 cut(s)	631, 779, 920
AgsI	TTSAA	1 cut(s)	412
AjnI	CCWGG	2 cut(s)	813, 864
AleI	CACNNNNGTG	1 cut(s)	458
AloI	GAACNNNNNNTCC	2 cut(s)	320, 352
AluBI	AGCT	8 cut(s)	14, 155, 367, 445, 604, 663, 794, 889
AluI	AGCT	8 cut(s)	14, 155, 367, 445, 604, 663, 794, 889
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	1 cut(s)	788
AoxI	GGCC	3 cut(s)	167, 360, 465
ApeKI	GCWGC	3 cut(s)	257, 442, 704
Asp700I	GAANNNNTTC	1 cut(s)	924
AspLEI	GCGC	4 cut(s)	125, 145, 647, 897
AspS9I	GGNCC	2 cut(s)	168, 275
AsuHPI	GGTGA	3 cut(s)	127, 325, 504
AsuII	TTCGAA	1 cut(s)	607
AvaII	GGWCC	1 cut(s)	275
BaeGI	GKGCMC	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	142
BbrPI	CACGTG	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	3 cut(s)	244, 454, 691
BccI	CCATC	2 cut(s)	296, 305
BceAI	ACGGC	2 cut(s)	153, 452
BciT130I	CCWGG	2 cut(s)	815, 866
BcoDI	GTCTC	1 cut(s)	788
BfaI	CTAG	1 cut(s)	884
BfmI	CTRYAG	1 cut(s)	150
BfoI	RGCGCY	1 cut(s)	146
BisI	GCNGC	6 cut(s)	126, 141, 258, 443, 465, 705
BlsI	GCNGC	6 cut(s)	127, 142, 259, 444, 466, 706
Bme1390I	CCNGG	2 cut(s)	815, 866
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	2 cut(s)	168, 275
BmiI	GGNNCC	2 cut(s)	144, 636
BmrFI	CCNGG	2 cut(s)	815, 866
BmsI	GCATC	2 cut(s)	314, 845
BpmI	CTGGAG	1 cut(s)	774
Bpu10I	CCTNAGC	2 cut(s)	172, 747
Bpu14I	TTCGAA	1 cut(s)	607
BsaAI	YACGTR	1 cut(s)	214
BsaHI	GRCGYC	1 cut(s)	143
BsaI	GGTCTC	1 cut(s)	788
BsaJI	CCNNGG	3 cut(s)	278, 813, 865
BsaXI	ACNNNNNCTCC	6 cut(s)	43, 47, 73, 77, 320, 350
Bsc4I	CCNNNNNNNGG	3 cut(s)	631, 779, 920
Bse118I	RCCGGY	3 cut(s)	112, 497, 536
BseBI	CCWGG	2 cut(s)	815, 866
BseDI	CCNNGG	3 cut(s)	278, 813, 865
BseGI	GGATG	1 cut(s)	823
BseLI	CCNNNNNNNGG	3 cut(s)	631, 779, 920
BseMII	CTCAG	3 cut(s)	38, 338, 912
BseRI	GAGGAG	1 cut(s)	627
BseSI	GKGCMC	1 cut(s)	219
BseX3I	CGGCCG	1 cut(s)	465
BseXI	GCAGC	3 cut(s)	244, 454, 691
BseYI	CCCAGC	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	851
Bsh1236I	CGCG	2 cut(s)	123, 645
Bsh1285I	CGRYCG	2 cut(s)	208, 468
BshFI	GGCC	3 cut(s)	169, 362, 467
BshNI	GGYRCC	1 cut(s)	142
BsiEI	CGRYCG	2 cut(s)	208, 468
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	3 cut(s)	113, 498, 537
BslFI	GGGAC	1 cut(s)	882
BslI	CCNNNNNNNGG	3 cut(s)	631, 779, 920
BsmAI	GTCTC	1 cut(s)	788
BsmFI	GGGAC	1 cut(s)	882
BsmI	GAATGC	1 cut(s)	924
BsnI	GGCC	3 cut(s)	169, 362, 467
Bso31I	GGTCTC	1 cut(s)	788
Bsp119I	TTCGAA	1 cut(s)	607
Bsp1286I	GDGCHC	2 cut(s)	219, 398
Bsp143I	GATC	1 cut(s)	194
BspACI	CCGC	5 cut(s)	126, 140, 208, 464, 551
BspANI	GGCC	3 cut(s)	169, 362, 467
BspCNI	CTCAG	3 cut(s)	37, 337, 911
BspFNI	CGCG	2 cut(s)	123, 645
BspLI	GGNNCC	2 cut(s)	144, 636
BspT104I	TTCGAA	1 cut(s)	607
BspT107I	GGYRCC	1 cut(s)	142
BspTNI	GGTCTC	1 cut(s)	788
BsrFI	RCCGGY	3 cut(s)	112, 497, 536
BssAI	RCCGGY	3 cut(s)	112, 497, 536
BssECI	CCNNGG	3 cut(s)	278, 813, 865
BssMI	GATC	1 cut(s)	194
BssNI	GRCGYC	1 cut(s)	143
BssT1I	CCWWGG	1 cut(s)	278
Bst2UI	CCWGG	2 cut(s)	815, 866
Bst4CI	ACNGT	6 cut(s)	46, 86, 457, 730, 738, 800
Bst6I	CTCTTC	3 cut(s)	195, 238, 881
BstACI	GRCGYC	1 cut(s)	143
BstBAI	YACGTR	1 cut(s)	214
BstBI	TTCGAA	1 cut(s)	607
BstC8I	GCNNGC	3 cut(s)	719, 723, 834
BstDEI	CTNAG	5 cut(s)	24, 172, 324, 747, 898
BstENI	CCTNNNNNAGG	1 cut(s)	918
BstF5I	GGATG	1 cut(s)	823
BstFNI	CGCG	2 cut(s)	123, 645
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	4 cut(s)	125, 145, 647, 897
BstKTI	GATC	1 cut(s)	197
BstMAI	GTCTC	1 cut(s)	788
BstMBI	GATC	1 cut(s)	194
BstMCI	CGRYCG	2 cut(s)	208, 468
BstNI	CCWGG	2 cut(s)	815, 866
BstNSI	RCATGY	1 cut(s)	721
BstSCI	CCNGG	2 cut(s)	813, 864
BstSFI	CTRYAG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	219
BstUI	CGCG	2 cut(s)	123, 645
BstV1I	GCAGC	3 cut(s)	244, 454, 691
BstZI	CGGCCG	1 cut(s)	465
BsuRI	GGCC	3 cut(s)	169, 362, 467
BtsCI	GGATG	1 cut(s)	823
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	2 cut(s)	453, 531
Cac8I	GCNNGC	3 cut(s)	719, 723, 834
CfoI	GCGC	4 cut(s)	125, 145, 647, 897
Cfr10I	RCCGGY	3 cut(s)	112, 497, 536
Cfr13I	GGNCC	2 cut(s)	168, 275
Csp6I	GTAC	2 cut(s)	28, 583
CviAII	CATG	1 cut(s)	718
CviQI	GTAC	2 cut(s)	28, 583
DdeI	CTNAG	5 cut(s)	24, 172, 324, 747, 898
DinI	GGCGCC	1 cut(s)	144
DpnI	GATC	1 cut(s)	196
DpnII	GATC	1 cut(s)	194
EaeI	YGGCCR	1 cut(s)	465
EagI	CGGCCG	1 cut(s)	465
Eam1104I	CTCTTC	3 cut(s)	195, 238, 881
EarI	CTCTTC	3 cut(s)	195, 238, 881
EclXI	CGGCCG	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	278
Eco31I	GGTCTC	1 cut(s)	788
Eco47I	GGWCC	1 cut(s)	275
Eco52I	CGGCCG	1 cut(s)	465
Eco57I	CTGAAG	2 cut(s)	356, 939
Eco72I	CACGTG	1 cut(s)	214
EcoNI	CCTNNNNNAGG	1 cut(s)	918
EcoRII	CCWGG	2 cut(s)	813, 864
EcoT14I	CCWWGG	1 cut(s)	278
EgeI	GGCGCC	1 cut(s)	144
EheI	GGCGCC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	278
FaeI	CATG	1 cut(s)	721
FaiI	YATR	9 cut(s)	95, 255, 494, 528, 656, 698, 719, 775, 946
FaqI	GGGAC	1 cut(s)	882
FatI	CATG	1 cut(s)	717
FauI	CCCGC	1 cut(s)	544
Fnu4HI	GCNGC	6 cut(s)	126, 141, 258, 443, 465, 705
FokI	GGATG	1 cut(s)	830
Fsp4HI	GCNGC	6 cut(s)	126, 141, 258, 443, 465, 705
FspBI	CTAG	1 cut(s)	884
GlaI	GCGC	4 cut(s)	124, 144, 646, 896
GluI	GCNGC	6 cut(s)	126, 141, 258, 443, 465, 705
GsaI	CCCAGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	774
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	3 cut(s)	169, 362, 467
HapII	CCGG	3 cut(s)	113, 498, 537
HhaI	GCGC	4 cut(s)	125, 145, 647, 897
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	1 cut(s)	721
Hin6I	GCGC	4 cut(s)	123, 143, 645, 895
HinP1I	GCGC	4 cut(s)	123, 143, 645, 895
HindIII	AAGCTT	2 cut(s)	602, 661
HinfI	GANTC	3 cut(s)	163, 472, 555
HpaII	CCGG	3 cut(s)	113, 498, 537
HphI	GGTGA	3 cut(s)	127, 325, 504
Hpy188I	TCNGA	5 cut(s)	205, 327, 598, 684, 919
Hpy188III	TCNNGA	2 cut(s)	160, 412
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	4 cut(s)	84, 380, 914, 924
HpyCH4III	ACNGT	6 cut(s)	46, 86, 457, 730, 738, 800
HpyCH4IV	ACGT	3 cut(s)	183, 213, 905
HpyCH4V	TGCA	7 cut(s)	97, 617, 629, 721, 767, 832, 944
HpyF3I	CTNAG	5 cut(s)	24, 172, 324, 747, 898
HpySE526I	ACGT	3 cut(s)	183, 213, 905
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	1 cut(s)	721
HspAI	GCGC	4 cut(s)	123, 143, 645, 895
KasI	GGCGCC	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	194
LmnI	GCTCC	4 cut(s)	19, 265, 372, 640
Lsp1109I	GCAGC	3 cut(s)	244, 454, 691
LweI	GCATC	2 cut(s)	314, 845
MaeI	CTAG	1 cut(s)	884
MaeII	ACGT	3 cut(s)	183, 213, 905
MaeIII	GTNAC	5 cut(s)	115, 157, 510, 620, 901
MalI	GATC	1 cut(s)	196
MboI	GATC	1 cut(s)	194
MboII	GAAGA	8 cut(s)	182, 225, 228, 237, 240, 300, 621, 868
MhlI	GDGCHC	2 cut(s)	219, 398
MluCI	AATT	1 cut(s)	318
Mly113I	GGCGCC	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	228
MroXI	GAANNNNTTC	1 cut(s)	924
MseI	TTAA	1 cut(s)	665
MslI	CAYNNNNRTG	2 cut(s)	458, 563
MspA1I	CMGCKG	2 cut(s)	155, 445
MspI	CCGG	3 cut(s)	113, 498, 537
MspR9I	CCNGG	2 cut(s)	815, 866
Mva1269I	GAATGC	1 cut(s)	924
MvaI	CCWGG	2 cut(s)	815, 866
MvnI	CGCG	2 cut(s)	123, 645
NarI	GGCGCC	1 cut(s)	143
NdeII	GATC	1 cut(s)	194
NlaIII	CATG	1 cut(s)	721
NlaIV	GGNNCC	2 cut(s)	144, 636
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	4 cut(s)	115, 157, 510, 620
NspI	RCATGY	1 cut(s)	721
NspV	TTCGAA	1 cut(s)	607
OliI	CACNNNNGTG	1 cut(s)	458
PaeI	GCATGC	1 cut(s)	721
PctI	GAATGC	1 cut(s)	924
PdmI	GAANNNNTTC	1 cut(s)	924
PfeI	GAWTC	2 cut(s)	472, 555
PkrI	GCNGC	6 cut(s)	127, 142, 259, 444, 466, 706
PleI	GAGTC	1 cut(s)	157
PluTI	GGCGCC	1 cut(s)	146
PmaCI	CACGTG	1 cut(s)	214
PmlI	CACGTG	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	157
Ppu21I	YACGTR	1 cut(s)	214
PsiI	TTATAA	2 cut(s)	494, 656
Psp1406I	AACGTT	1 cut(s)	905
Psp6I	CCWGG	2 cut(s)	813, 864
PspCI	CACGTG	1 cut(s)	214
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	2 cut(s)	813, 864
PspN4I	GGNNCC	2 cut(s)	144, 636
PspPI	GGNCC	2 cut(s)	168, 275
PvuII	CAGCTG	2 cut(s)	155, 445
RsaI	GTAC	2 cut(s)	29, 584
RsaNI	GTAC	2 cut(s)	28, 583
RseI	CAYNNNNRTG	2 cut(s)	458, 563
SaqAI	TTAA	1 cut(s)	665
SatI	GCNGC	6 cut(s)	126, 141, 258, 443, 465, 705
Sau3AI	GATC	1 cut(s)	194
Sau96I	GGNCC	2 cut(s)	168, 275
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	2 cut(s)	815, 866
SduI	GDGCHC	2 cut(s)	219, 398
SfaNI	GCATC	2 cut(s)	314, 845
SfcI	CTRYAG	1 cut(s)	150
SfoI	GGCGCC	1 cut(s)	144
SfuI	TTCGAA	1 cut(s)	607
SgrAI	CRCCGGYG	1 cut(s)	112
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	2 cut(s)	458, 563
SphI	GCATGC	1 cut(s)	721
Sse9I	AATT	1 cut(s)	318
SsiI	CCGC	5 cut(s)	126, 140, 208, 464, 551
SspDI	GGCGCC	1 cut(s)	142
SspMI	CTAG	1 cut(s)	884
StyD4I	CCNGG	2 cut(s)	813, 864
StyI	CCWWGG	1 cut(s)	278
TaaI	ACNGT	6 cut(s)	46, 86, 457, 730, 738, 800
TaiI	ACGT	3 cut(s)	186, 216, 908
TaqI	TCGA	2 cut(s)	193, 607
TasI	AATT	1 cut(s)	318
TauI	GCSGC	3 cut(s)	128, 143, 467
TfiI	GAWTC	2 cut(s)	472, 555
Tru1I	TTAA	1 cut(s)	665
Tru9I	TTAA	1 cut(s)	665
TscAI	CASTG	2 cut(s)	460, 538
TseFI	GTSAC	4 cut(s)	115, 157, 510, 620
TseI	GCWGC	3 cut(s)	257, 442, 704
Tsp45I	GTSAC	4 cut(s)	115, 157, 510, 620
TspDTI	ATGAA	1 cut(s)	547
TspRI	CASTG	2 cut(s)	460, 538
VpaK11BI	GGWCC	1 cut(s)	275
XagI	CCTNNNNNAGG	1 cut(s)	918
XceI	RCATGY	1 cut(s)	721
XmnI	GAANNNNTTC	1 cut(s)	924
XspI	CTAG	1 cut(s)	884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.