Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013039

Physical Location & Seq

Genomic Coordinates Forward (+)

60323045 .. 60325263

Gene Structure 2219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGGTGCTGCTGTTCTTGGTATGCAAGCCACAGTAGGAATATTGGTTGCTAAGGCTCTTACGTCCTCAGCAAATCCATATTACCAGGGTATCTCTCCTGGCTACAGTCCTGTTCTTGCATTGGATGTATTCTTGGTGCAGGCATCCGCAAACACTATCCTTTCACATTTCTTGGGGCTTGTTTTCTCATTAGAGCTGTTGCGCTCAGTGTCATTGCCACCTGCAGAAGGCAGTCCCATTCCTAGGATGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006873 GO:0006875 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019725 GO:0019866 GO:0030003 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042592 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055080 GO:0055082 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3611

Protein Analysis

84

Amino Acids

8.66

Weight (kDa)

6.51

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3611	PF12263	1 - 70	2.2e-19	Protein of unknown function (DUF3611)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15290
fragaria_vesca	FvH4_2g05240
malus_domestica	MD05G1088600.v1.1 MD10G1096700.v1.1
prunus_persica	Prupe.8G134600_v2.0.a1 Prupe.8G134600_v2.0.a1
pyrus_communis	pycom05g08800 pycom10g08280
rosa_chinensis	RchiOBHm_Chr6g0255371
rosa_laevigata	RLG00000014843
rosa_multiflora	Rmu_co8499097.1_g000001 Rmu_sc0002360.1_g000018
rosa_roxburghii	Rroxscaffold_7G00210040
rosa_rugosa	Rorug05G0557700
rosa_samantha	Rh6AG075500 Rh6BG068100 Rh6CG067800 Rh6DG064400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	229
Acc36I	ACCTGC	1 cut(s)	229
AciI	CCGC	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	227, 243
AjnI	CCWGG	2 cut(s)	84, 97
AluBI	AGCT	1 cut(s)	196
AluI	AGCT	1 cut(s)	196
ApeKI	GCWGC	1 cut(s)	8
AspA2I	CCTAGG	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	204
AvrII	CCTAGG	1 cut(s)	242
BaeI	ACNNNNGTAYC	2 cut(s)	73, 106
BbvCI	CCTCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	241
BciT130I	CCWGG	2 cut(s)	86, 99
BfaI	CTAG	1 cut(s)	243
BfmI	CTRYAG	2 cut(s)	103, 222
BfuAI	ACCTGC	1 cut(s)	229
BisI	GCNGC	1 cut(s)	9
BlnI	CCTAGG	1 cut(s)	242
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	2 cut(s)	86, 99
BmrFI	CCNGG	2 cut(s)	86, 99
BmsI	GCATC	1 cut(s)	152
Bpu10I	CCTNAGC	2 cut(s)	51, 67
BsaJI	CCNNGG	2 cut(s)	85, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 243
Bse3DI	GCAATG	1 cut(s)	212
BseBI	CCWGG	2 cut(s)	86, 99
BseDI	CCNNGG	2 cut(s)	85, 242
BseGI	GGATG	3 cut(s)	130, 143, 252
BseLI	CCNNNNNNNGG	2 cut(s)	227, 243
BseMI	GCAATG	1 cut(s)	212
BseMII	CTCAG	2 cut(s)	81, 219
BsgI	GTGCAG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	227, 243
BsmFI	GGGAC	1 cut(s)	219
BspACI	CCGC	1 cut(s)	147
BspCNI	CTCAG	2 cut(s)	80, 218
BspMAI	CTGCAG	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	212
BssECI	CCNNGG	2 cut(s)	85, 242
BssT1I	CCWWGG	1 cut(s)	242
Bst2UI	CCWGG	2 cut(s)	86, 99
Bst4CI	ACNGT	2 cut(s)	34, 107
BstC8I	GCNNGC	2 cut(s)	27, 141
BstDEI	CTNAG	3 cut(s)	51, 67, 205
BstENI	CCTNNNNNAGG	1 cut(s)	225
BstF5I	GGATG	3 cut(s)	130, 143, 252
BstHHI	GCGC	1 cut(s)	204
BstNI	CCWGG	2 cut(s)	86, 99
BstSCI	CCNGG	2 cut(s)	84, 97
BstSFI	CTRYAG	2 cut(s)	103, 222
BtsCI	GGATG	3 cut(s)	130, 143, 252
BtsIMutI	CAGTG	1 cut(s)	213
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	2 cut(s)	27, 141
CfoI	GCGC	1 cut(s)	204
CviJI	RGCY	6 cut(s)	29, 56, 102, 178, 196, 251
CviKI_1	RGCY	6 cut(s)	29, 56, 102, 178, 196, 251
DdeI	CTNAG	3 cut(s)	51, 67, 205
Eco130I	CCWWGG	1 cut(s)	242
EcoNI	CCTNNNNNAGG	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	84, 97
EcoT14I	CCWWGG	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	242
FaiI	YATR	2 cut(s)	23, 79
FaqI	GGGAC	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	2 cut(s)	130, 137
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	9
HhaI	GCGC	1 cut(s)	204
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	2 cut(s)	34, 107
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	4 cut(s)	25, 119, 139, 224
HpyF3I	CTNAG	3 cut(s)	51, 67, 205
HpySE526I	ACGT	1 cut(s)	62
HspAI	GCGC	1 cut(s)	202
LpnPI	CCDG	7 cut(s)	71, 84, 98, 111, 123, 125, 234
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	1 cut(s)	62
MnlI	CCTC	1 cut(s)	76
MseI	TTAA	1 cut(s)	253
MspR9I	CCNGG	2 cut(s)	86, 99
MvaI	CCWGG	2 cut(s)	86, 99
PaqCI	CACCTGC	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	10
Psp6I	CCWGG	2 cut(s)	84, 97
PspGI	CCWGG	2 cut(s)	84, 97
PstI	CTGCAG	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	253
SatI	GCNGC	1 cut(s)	9
ScrFI	CCNGG	2 cut(s)	86, 99
SetI	ASST	3 cut(s)	65, 198, 223
SfaNI	GCATC	1 cut(s)	152
SfcI	CTRYAG	2 cut(s)	103, 222
SsiI	CCGC	1 cut(s)	147
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	84, 97
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	2 cut(s)	34, 107
TaiI	ACGT	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	253
Tru9I	TTAA	1 cut(s)	253
TscAI	CASTG	1 cut(s)	213
TseI	GCWGC	1 cut(s)	8
TspRI	CASTG	1 cut(s)	213
XagI	CCTNNNNNAGG	1 cut(s)	225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XmaJI	CCTAGG	1 cut(s)	242
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.