Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013039

Physical Location & Seq

Genomic Coordinates Forward (+)

15429219 .. 15431379

Gene Structure 2161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1096700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGCAAACTCTATTATCGCCGGTGACACGCGCCGCCTACTTCACGGCGGCGCCACCTACATCTGTCACGACTCGGCCCTTAGTGTATCACGTTCCTCTTCGATCAATCTCCGACCGCCACGTGCCCAGCCTCACTCTCTCTTCTTCGTTTTCTTCTTCGTATGCTGCTCCCACCCACAGAGGACCAAAGCTCTCCATCAGCACCATCAGGGCATCTTCCCCTCCAATTTCTCAGAACTTCACCTCCCCAAACGACGAAACCGAAAGGGCCAAGCTCCTTCAGGTAGCCAAAAGGTTAGAGAGTACAGCAAGGTATTTCAAGAGGTTGGGTAGTTTAGGGTTTTGGGGGCAGCTGGTCAGCACTGTTGTGGCGGCCGTGATTCTTTCGTTTTCGGTTGTTATAACCGGCAAGGTTTCGTCACCACCTACTTTTTATGCCACTGCGGGTGGGATTGTGGCGGGATTCATCTCTGTGTTTTGGTCATTTGGGTACATTCGCCTCTCGGATAAGCTTCGAAGAAGTGCAAGTGACCCTGCAAAGGCTCCTCCACGCGCTGATGTTATAAAAAGCTTAAAGAATGGCATTCTTCTGAACATTTTGGGTATGGGTGCTGCTGTTCTTGGCATGCAAGCAACGGTAGGACTGTTGGTTGCTAAGGCTTTTACTTCCTCTGCAAATCCGTATCAGGGTCTCACTCCGGGTTACAGTCCTGTTCTTGCCTTGGATGTATTCTTGGTGCAGGCATCGGCAAACACTATCCTTTCTCACTTCCTGGGACTTCTCTTCTCGCTAGAGCTGTTGCGCTCAGTAACGTTGCCACCTTCTGAAGGCATTCCCATTCCCAGATTCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006873 GO:0006875 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019725 GO:0019866 GO:0030003 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042592 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055080 GO:0055082 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3611

Protein Analysis

285

Amino Acids

30.24

Weight (kDa)

10.48

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3611	PF12263	97 - 270	1.9e-53	Protein of unknown function (DUF3611)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15290
fragaria_vesca	FvH4_2g05240
malus_domestica	MD05G1088600.v1.1 MD10G1096700.v1.1
prunus_persica	Prupe.8G134600_v2.0.a1 Prupe.8G134600_v2.0.a1
pyrus_communis	pycom05g08800 pycom10g08280
rosa_chinensis	RchiOBHm_Chr6g0255371
rosa_laevigata	RLG00000014843
rosa_multiflora	Rmu_co8499097.1_g000001 Rmu_sc0002360.1_g000018
rosa_roxburghii	Rroxscaffold_7G00210040
rosa_rugosa	Rorug05G0557700
rosa_samantha	Rh6AG075500 Rh6BG068100 Rh6CG067800 Rh6DG064400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	401, 563
AccB1I	GGYRCC	1 cut(s)	49
AccII	CGCG	2 cut(s)	30, 552
AciI	CCGC	6 cut(s)	33, 47, 115, 371, 443, 458
AclI	AACGTT	1 cut(s)	812
AcoI	YGGCCR	1 cut(s)	372
AcuI	CTGAAG	2 cut(s)	263, 846
AcvI	CACGTG	1 cut(s)	121
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	2 cut(s)	304, 491
AfiI	CCNNNNNNNGG	3 cut(s)	538, 686, 827
AgsI	TTSAA	1 cut(s)	319
AjnI	CCWGG	1 cut(s)	771
AleI	CACNNNNGTG	1 cut(s)	365
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	6 cut(s)	190, 274, 352, 511, 570, 796
AluI	AGCT	6 cut(s)	190, 274, 352, 511, 570, 796
Alw26I	GTCTC	1 cut(s)	695
AoxI	GGCC	3 cut(s)	74, 267, 372
ApeKI	GCWGC	3 cut(s)	164, 349, 611
Asp700I	GAANNNNTTC	1 cut(s)	831
AspLEI	GCGC	4 cut(s)	32, 52, 554, 804
AspS9I	GGNCC	3 cut(s)	75, 182, 267
AsuC2I	CCSGG	1 cut(s)	699
AsuHPI	GGTGA	3 cut(s)	34, 232, 411
AsuII	TTCGAA	1 cut(s)	514
AvaII	GGWCC	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	49
BbrPI	CACGTG	1 cut(s)	121
BbvI	GCAGC	3 cut(s)	151, 361, 598
BccI	CCATC	2 cut(s)	203, 212
BceAI	ACGGC	2 cut(s)	60, 359
BciT130I	CCWGG	1 cut(s)	773
BcnI	CCSGG	1 cut(s)	699
BcoDI	GTCTC	1 cut(s)	695
BfaI	CTAG	1 cut(s)	791
BfoI	RGCGCY	1 cut(s)	53
BisI	GCNGC	6 cut(s)	33, 48, 165, 350, 372, 612
BlsI	GCNGC	6 cut(s)	34, 49, 166, 351, 373, 613
Bme1390I	CCNGG	2 cut(s)	699, 773
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	3 cut(s)	75, 182, 267
BmiI	GGNNCC	2 cut(s)	51, 543
BmrFI	CCNGG	2 cut(s)	699, 773
BmsI	GCATC	2 cut(s)	221, 752
Bpu10I	CCTNAGC	1 cut(s)	654
Bpu14I	TTCGAA	1 cut(s)	514
BpuMI	CCSGG	1 cut(s)	699
BsaAI	YACGTR	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	695
BsaJI	CCNNGG	2 cut(s)	720, 772
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	3 cut(s)	538, 686, 827
Bse118I	RCCGGY	2 cut(s)	19, 404
BseBI	CCWGG	1 cut(s)	773
BseDI	CCNNGG	2 cut(s)	720, 772
BseGI	GGATG	1 cut(s)	730
BseLI	CCNNNNNNNGG	3 cut(s)	538, 686, 827
BseMII	CTCAG	2 cut(s)	245, 819
BseRI	GAGGAG	1 cut(s)	534
BseSI	GKGCMC	1 cut(s)	126
BseX3I	CGGCCG	1 cut(s)	372
BseXI	GCAGC	3 cut(s)	151, 361, 598
BseYI	CCCAGC	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	758
Bsh1236I	CGCG	2 cut(s)	30, 552
Bsh1285I	CGRYCG	2 cut(s)	115, 375
BshFI	GGCC	3 cut(s)	76, 269, 374
BshNI	GGYRCC	1 cut(s)	49
BsiEI	CGRYCG	2 cut(s)	115, 375
BsiSI	CCGG	3 cut(s)	20, 405, 698
BslFI	GGGAC	1 cut(s)	789
BslI	CCNNNNNNNGG	3 cut(s)	538, 686, 827
BsmAI	GTCTC	1 cut(s)	695
BsmFI	GGGAC	1 cut(s)	789
BsmI	GAATGC	2 cut(s)	582, 831
BsnI	GGCC	3 cut(s)	76, 269, 374
Bso31I	GGTCTC	1 cut(s)	695
Bsp119I	TTCGAA	1 cut(s)	514
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	101
BspACI	CCGC	6 cut(s)	33, 47, 115, 371, 443, 458
BspANI	GGCC	3 cut(s)	76, 269, 374
BspCNI	CTCAG	2 cut(s)	244, 818
BspFNI	CGCG	2 cut(s)	30, 552
BspLI	GGNNCC	2 cut(s)	51, 543
BspT104I	TTCGAA	1 cut(s)	514
BspT107I	GGYRCC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	695
BsrFI	RCCGGY	2 cut(s)	19, 404
BssAI	RCCGGY	2 cut(s)	19, 404
BssECI	CCNNGG	2 cut(s)	720, 772
BssMI	GATC	1 cut(s)	101
BssNI	GRCGYC	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	720
Bst2UI	CCWGG	1 cut(s)	773
Bst4CI	ACNGT	4 cut(s)	364, 637, 645, 707
Bst6I	CTCTTC	3 cut(s)	102, 145, 788
BstACI	GRCGYC	1 cut(s)	50
BstBAI	YACGTR	1 cut(s)	121
BstBI	TTCGAA	1 cut(s)	514
BstC8I	GCNNGC	3 cut(s)	626, 630, 741
BstDEI	CTNAG	4 cut(s)	79, 231, 654, 805
BstENI	CCTNNNNNAGG	1 cut(s)	825
BstF5I	GGATG	1 cut(s)	730
BstFNI	CGCG	2 cut(s)	30, 552
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	4 cut(s)	32, 52, 554, 804
BstKTI	GATC	1 cut(s)	104
BstMAI	GTCTC	1 cut(s)	695
BstMBI	GATC	1 cut(s)	101
BstMCI	CGRYCG	2 cut(s)	115, 375
BstNI	CCWGG	1 cut(s)	773
BstNSI	RCATGY	1 cut(s)	628
BstSCI	CCNGG	2 cut(s)	697, 771
BstSLI	GKGCMC	1 cut(s)	126
BstUI	CGCG	2 cut(s)	30, 552
BstV1I	GCAGC	3 cut(s)	151, 361, 598
BstZI	CGGCCG	1 cut(s)	372
BsuRI	GGCC	3 cut(s)	76, 269, 374
BtsCI	GGATG	1 cut(s)	730
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	2 cut(s)	360, 438
Cac8I	GCNNGC	3 cut(s)	626, 630, 741
CfoI	GCGC	4 cut(s)	32, 52, 554, 804
Cfr10I	RCCGGY	2 cut(s)	19, 404
Cfr13I	GGNCC	3 cut(s)	75, 182, 267
Csp6I	GTAC	2 cut(s)	303, 490
CviAII	CATG	1 cut(s)	625
CviQI	GTAC	2 cut(s)	303, 490
DdeI	CTNAG	4 cut(s)	79, 231, 654, 805
DinI	GGCGCC	1 cut(s)	51
DpnI	GATC	1 cut(s)	103
DpnII	GATC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	372
EagI	CGGCCG	1 cut(s)	372
Eam1104I	CTCTTC	3 cut(s)	102, 145, 788
EarI	CTCTTC	3 cut(s)	102, 145, 788
EclXI	CGGCCG	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	720
Eco31I	GGTCTC	1 cut(s)	695
Eco47I	GGWCC	1 cut(s)	182
Eco52I	CGGCCG	1 cut(s)	372
Eco57I	CTGAAG	2 cut(s)	263, 846
Eco72I	CACGTG	1 cut(s)	121
EcoNI	CCTNNNNNAGG	1 cut(s)	825
EcoRII	CCWGG	1 cut(s)	771
EcoT14I	CCWWGG	1 cut(s)	720
EgeI	GGCGCC	1 cut(s)	51
EheI	GGCGCC	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	720
FaeI	CATG	1 cut(s)	628
FaiI	YATR	7 cut(s)	162, 401, 435, 563, 605, 626, 853
FaqI	GGGAC	1 cut(s)	789
FatI	CATG	1 cut(s)	624
FauI	CCCGC	2 cut(s)	436, 451
Fnu4HI	GCNGC	6 cut(s)	33, 48, 165, 350, 372, 612
FokI	GGATG	1 cut(s)	737
Fsp4HI	GCNGC	6 cut(s)	33, 48, 165, 350, 372, 612
FspBI	CTAG	1 cut(s)	791
GlaI	GCGC	4 cut(s)	31, 51, 553, 803
GluI	GCNGC	6 cut(s)	33, 48, 165, 350, 372, 612
GsaI	CCCAGC	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	76, 269, 374
HapII	CCGG	3 cut(s)	20, 405, 698
HhaI	GCGC	4 cut(s)	32, 52, 554, 804
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	628
Hin6I	GCGC	4 cut(s)	30, 50, 552, 802
HinP1I	GCGC	4 cut(s)	30, 50, 552, 802
HindIII	AAGCTT	2 cut(s)	509, 568
HinfI	GANTC	4 cut(s)	70, 379, 462, 846
HpaII	CCGG	3 cut(s)	20, 405, 698
HphI	GGTGA	3 cut(s)	34, 232, 411
Hpy188I	TCNGA	5 cut(s)	112, 234, 505, 591, 826
Hpy188III	TCNNGA	2 cut(s)	67, 319
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	3 cut(s)	287, 821, 831
HpyCH4III	ACNGT	4 cut(s)	364, 637, 645, 707
HpyCH4IV	ACGT	3 cut(s)	90, 120, 812
HpyCH4V	TGCA	6 cut(s)	4, 524, 536, 628, 674, 739
HpyF3I	CTNAG	4 cut(s)	79, 231, 654, 805
HpySE526I	ACGT	3 cut(s)	90, 120, 812
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	628
HspAI	GCGC	4 cut(s)	30, 50, 552, 802
KasI	GGCGCC	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	101
LmnI	GCTCC	3 cut(s)	172, 279, 547
Lsp1109I	GCAGC	3 cut(s)	151, 361, 598
LweI	GCATC	2 cut(s)	221, 752
MaeI	CTAG	1 cut(s)	791
MaeII	ACGT	3 cut(s)	90, 120, 812
MaeIII	GTNAC	6 cut(s)	22, 64, 417, 527, 701, 808
MalI	GATC	1 cut(s)	103
MboI	GATC	1 cut(s)	101
MboII	GAAGA	9 cut(s)	89, 132, 135, 144, 147, 207, 528, 578, 775
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	1 cut(s)	225
Mly113I	GGCGCC	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	64
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	9 cut(s)	105, 140, 173, 231, 253, 315, 509, 555, 679
MroXI	GAANNNNTTC	1 cut(s)	831
MseI	TTAA	1 cut(s)	572
MslI	CAYNNNNRTG	2 cut(s)	365, 470
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	3 cut(s)	20, 405, 698
MspR9I	CCNGG	2 cut(s)	699, 773
Mva1269I	GAATGC	2 cut(s)	582, 831
MvaI	CCWGG	1 cut(s)	773
MvnI	CGCG	2 cut(s)	30, 552
NarI	GGCGCC	1 cut(s)	50
NciI	CCSGG	1 cut(s)	699
NdeII	GATC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	628
NlaIV	GGNNCC	2 cut(s)	51, 543
NmeAIII	GCCGAG	1 cut(s)	52
NmuCI	GTSAC	4 cut(s)	22, 64, 417, 527
NspI	RCATGY	1 cut(s)	628
NspV	TTCGAA	1 cut(s)	514
OliI	CACNNNNGTG	1 cut(s)	365
PaeI	GCATGC	1 cut(s)	628
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PctI	GAATGC	2 cut(s)	582, 831
PdmI	GAANNNNTTC	1 cut(s)	831
PfeI	GAWTC	3 cut(s)	379, 462, 846
PkrI	GCNGC	6 cut(s)	34, 49, 166, 351, 373, 613
PleI	GAGTC	1 cut(s)	64
PluTI	GGCGCC	1 cut(s)	53
PmaCI	CACGTG	1 cut(s)	121
PmlI	CACGTG	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	64
Ppu21I	YACGTR	1 cut(s)	121
PsiI	TTATAA	2 cut(s)	401, 563
Psp1406I	AACGTT	1 cut(s)	812
Psp6I	CCWGG	1 cut(s)	771
PspCI	CACGTG	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	771
PspN4I	GGNNCC	2 cut(s)	51, 543
PspPI	GGNCC	3 cut(s)	75, 182, 267
PvuII	CAGCTG	1 cut(s)	352
RsaI	GTAC	2 cut(s)	304, 491
RsaNI	GTAC	2 cut(s)	303, 490
RseI	CAYNNNNRTG	2 cut(s)	365, 470
SaqAI	TTAA	1 cut(s)	572
SatI	GCNGC	6 cut(s)	33, 48, 165, 350, 372, 612
Sau3AI	GATC	1 cut(s)	101
Sau96I	GGNCC	3 cut(s)	75, 182, 267
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	2 cut(s)	699, 773
SduI	GDGCHC	1 cut(s)	126
SfaNI	GCATC	2 cut(s)	221, 752
SfoI	GGCGCC	1 cut(s)	51
SfuI	TTCGAA	1 cut(s)	514
SgrAI	CRCCGGYG	1 cut(s)	19
SinI	GGWCC	1 cut(s)	182
SmiMI	CAYNNNNRTG	2 cut(s)	365, 470
SphI	GCATGC	1 cut(s)	628
Sse9I	AATT	1 cut(s)	225
SsiI	CCGC	6 cut(s)	33, 47, 115, 371, 443, 458
SspDI	GGCGCC	1 cut(s)	49
SspMI	CTAG	1 cut(s)	791
StyD4I	CCNGG	2 cut(s)	697, 771
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	4 cut(s)	364, 637, 645, 707
TaiI	ACGT	3 cut(s)	93, 123, 815
TaqI	TCGA	2 cut(s)	100, 514
TasI	AATT	1 cut(s)	225
TatI	WGTACW	1 cut(s)	302
TauI	GCSGC	3 cut(s)	35, 50, 374
TfiI	GAWTC	3 cut(s)	379, 462, 846
Tru1I	TTAA	1 cut(s)	572
Tru9I	TTAA	1 cut(s)	572
TscAI	CASTG	2 cut(s)	367, 445
TseFI	GTSAC	4 cut(s)	22, 64, 417, 527
TseI	GCWGC	3 cut(s)	164, 349, 611
Tsp45I	GTSAC	4 cut(s)	22, 64, 417, 527
TspDTI	ATGAA	1 cut(s)	454
TspGWI	ACGGA	1 cut(s)	669
TspRI	CASTG	2 cut(s)	367, 445
VpaK11BI	GGWCC	1 cut(s)	182
XagI	CCTNNNNNAGG	1 cut(s)	825
XceI	RCATGY	1 cut(s)	628
XmnI	GAANNNNTTC	1 cut(s)	831
XspI	CTAG	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.