Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013039

Physical Location & Seq

Genomic Coordinates Forward (+)

15544725 .. 15547690

Gene Structure 2966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G134600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCAAACGTTGCTATCGCCGGCAGCTCGCGCCGGCTACTTCACGGCGGCGCCACCGCCAGCTGTCACGGCTCGGCCCTTAGCTTATCATCTCCCTCTTCGATCAATCTCCGACCGCCACGTGCCCAGCCACACTCTCTCTTCTTCTTCTTCTTCGTCTTTGTCTCTTCCTTCATTTGCCGCTCCCAATCACAGAGGATCAAAGCTCTCCTTCACCACTGTAAGGGCTTCTTCTACTCCAATTTCGCAGACATTCACTTCCCCGAACGATGAATCCGAGAAGGCCAAGCTCCTCCAGGTAGCCAAAAGGTTAGAGAGCACAGCCAGGTACTTCAAGAGGTTGGGTGGTTTAGGGTTTTGGGGGCAGCTGGTGTGCACTGTTGTGGCCGCTGTGATTCTTTCATTTTCGGTTGTTATAACTGGCAAGATTTCGTCACCGCCTACTTTTTATGCCACTGCCGGTGGGATTGTGGCGGCATTCATTTCTGTGTTCTGGTCATTCGGGTACATTCGCCTCTCTGATAAGCTTCGAAGAACCGCAAGTGACCCTGCAAAGGCTCCTCCTCGTGCTGATGTTATAAGGAGCTTAAAGAATGGCATAATACTGAACCTGTTGGGTATGGGTGCTTCTGTTCTTGGCATGCAAGCCACAGTGGGACTGCTGGTTGCTAAGGCTCTTACTTCCTCAGCAAATCCATATTACCAGGGTCTCTCTCCTGGTTACAGTCCCGTTCTTGCCTTGGATGTATTCTTAGTGCAGGCAGCGGCTAACACCATCCTTTCTCATTTCCTGGGACTTGTTTTCTCATTAGAGCTGTTGCGCTCAGTGACATTGCCACCTTCAGAAGGCATTCCCATTCCTAGGATCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006873 GO:0006875 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019725 GO:0019866 GO:0030003 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042592 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055080 GO:0055082 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3611

Protein Analysis

291

Amino Acids

30.65

Weight (kDa)

10.38

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15290
fragaria_vesca	FvH4_2g05240
malus_domestica	MD05G1088600.v1.1 MD10G1096700.v1.1
prunus_persica	Prupe.8G134600_v2.0.a1 Prupe.8G134600_v2.0.a1
pyrus_communis	pycom05g08800 pycom10g08280
rosa_chinensis	RchiOBHm_Chr6g0255371
rosa_laevigata	RLG00000014843
rosa_multiflora	Rmu_co8499097.1_g000001 Rmu_sc0002360.1_g000018
rosa_roxburghii	Rroxscaffold_7G00210040
rosa_rugosa	Rorug05G0557700
rosa_samantha	Rh6AG075500 Rh6BG068100 Rh6CG067800 Rh6DG064400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	416, 578
AccB1I	GGYRCC	1 cut(s)	49
AccBSI	CCGCTC	1 cut(s)	182
AccII	CGCG	1 cut(s)	30
AciI	CCGC	9 cut(s)	47, 56, 115, 180, 387, 437, 473, 537, 764
AclI	AACGTT	1 cut(s)	8
AclWI	GGATC	2 cut(s)	205, 872
AcoI	YGGCCR	1 cut(s)	384
AcuI	CTGAAG	1 cut(s)	825
AcvI	CACGTG	1 cut(s)	121
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	2 cut(s)	329, 506
AfiI	CCNNNNNNNGG	4 cut(s)	222, 553, 845, 861
AgsI	TTSAA	1 cut(s)	334
AjnI	CCWGG	5 cut(s)	294, 323, 702, 715, 789
AleI	CACNNNNGTG	1 cut(s)	380
AloI	GAACNNNNNNTCC	2 cut(s)	257, 289
AluBI	AGCT	9 cut(s)	26, 62, 83, 205, 289, 367, 526, 585, 814
AluI	AGCT	9 cut(s)	26, 62, 83, 205, 289, 367, 526, 585, 814
Alw21I	GWGCWC	2 cut(s)	320, 377
Alw26I	GTCTC	2 cut(s)	168, 713
Alw44I	GTGCAC	1 cut(s)	373
AlwI	GGATC	2 cut(s)	205, 872
AoxI	GGCC	3 cut(s)	74, 282, 384
ApaLI	GTGCAC	1 cut(s)	373
ApeKI	GCWGC	3 cut(s)	23, 364, 761
Asp700I	GAANNNNTTC	1 cut(s)	849
AspA2I	CCTAGG	1 cut(s)	860
AspLEI	GCGC	3 cut(s)	32, 52, 822
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	2 cut(s)	205, 426
AsuII	TTCGAA	1 cut(s)	529
AvrII	CCTAGG	1 cut(s)	860
BaeGI	GKGCMC	2 cut(s)	126, 377
BanI	GGYRCC	1 cut(s)	49
BarI	GAAGNNNNNNTAC	2 cut(s)	610, 642
BauI	CACGAG	1 cut(s)	564
BbrPI	CACGTG	1 cut(s)	121
Bbv12I	GWGCWC	2 cut(s)	320, 377
BbvCI	CCTCAGC	1 cut(s)	685
BbvI	GCAGC	3 cut(s)	35, 376, 773
BccI	CCATC	1 cut(s)	782
BceAI	ACGGC	2 cut(s)	60, 84
BciT130I	CCWGG	5 cut(s)	296, 325, 704, 717, 791
BcoDI	GTCTC	2 cut(s)	168, 713
BfaI	CTAG	1 cut(s)	861
BfoI	RGCGCY	1 cut(s)	53
BisI	GCNGC	8 cut(s)	24, 48, 180, 365, 387, 474, 762, 765
BlnI	CCTAGG	1 cut(s)	860
BlsI	GCNGC	8 cut(s)	25, 49, 181, 366, 388, 475, 763, 766
Bme1390I	CCNGG	5 cut(s)	296, 325, 704, 717, 791
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	2 cut(s)	51, 558
BmrFI	CCNGG	5 cut(s)	296, 325, 704, 717, 791
BpmI	CTGGAG	1 cut(s)	278
Bpu10I	CCTNAGC	3 cut(s)	79, 669, 685
Bpu14I	TTCGAA	1 cut(s)	529
BsaAI	YACGTR	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	713
BsaJI	CCNNGG	4 cut(s)	703, 738, 790, 860
Bsc4I	CCNNNNNNNGG	4 cut(s)	222, 553, 845, 861
Bse118I	RCCGGY	3 cut(s)	19, 32, 458
Bse1I	ACTGG	1 cut(s)	424
Bse3DI	GCAATG	1 cut(s)	830
BseBI	CCWGG	5 cut(s)	296, 325, 704, 717, 791
BseDI	CCNNGG	4 cut(s)	703, 738, 790, 860
BseGI	GGATG	2 cut(s)	748, 774
BseLI	CCNNNNNNNGG	4 cut(s)	222, 553, 845, 861
BseMI	GCAATG	1 cut(s)	830
BseMII	CTCAG	2 cut(s)	699, 837
BseNI	ACTGG	1 cut(s)	424
BseRI	GAGGAG	3 cut(s)	281, 549, 552
BseSI	GKGCMC	2 cut(s)	126, 377
BseXI	GCAGC	3 cut(s)	35, 376, 773
BseYI	CCCAGC	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	776
Bsh1236I	CGCG	1 cut(s)	30
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	3 cut(s)	76, 284, 386
BshNI	GGYRCC	1 cut(s)	49
BsiEI	CGRYCG	1 cut(s)	115
BsiHKAI	GWGCWC	2 cut(s)	320, 377
BsiSI	CCGG	3 cut(s)	20, 33, 459
BslFI	GGGAC	3 cut(s)	669, 711, 807
BslI	CCNNNNNNNGG	4 cut(s)	222, 553, 845, 861
BsmAI	GTCTC	2 cut(s)	168, 713
BsmFI	GGGAC	3 cut(s)	669, 711, 807
BsmI	GAATGC	2 cut(s)	476, 849
BsnI	GGCC	3 cut(s)	76, 284, 386
Bso31I	GGTCTC	1 cut(s)	713
Bsp119I	TTCGAA	1 cut(s)	529
Bsp1286I	GDGCHC	3 cut(s)	126, 320, 377
Bsp143I	GATC	3 cut(s)	101, 197, 864
BspACI	CCGC	9 cut(s)	47, 56, 115, 180, 387, 437, 473, 537, 764
BspANI	GGCC	3 cut(s)	76, 284, 386
BspCNI	CTCAG	2 cut(s)	698, 836
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	51, 558
BspPI	GGATC	2 cut(s)	205, 872
BspT104I	TTCGAA	1 cut(s)	529
BspT107I	GGYRCC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	713
BsrBI	CCGCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	830
BsrFI	RCCGGY	3 cut(s)	19, 32, 458
BsrI	ACTGG	1 cut(s)	424
BssAI	RCCGGY	3 cut(s)	19, 32, 458
BssECI	CCNNGG	4 cut(s)	703, 738, 790, 860
BssMI	GATC	3 cut(s)	101, 197, 864
BssNI	GRCGYC	1 cut(s)	50
BssSI	CACGAG	1 cut(s)	564
BssT1I	CCWWGG	2 cut(s)	738, 860
Bst2BI	CACGAG	1 cut(s)	564
Bst2UI	CCWGG	5 cut(s)	296, 325, 704, 717, 791
Bst4CI	ACNGT	4 cut(s)	220, 379, 652, 725
Bst6I	CTCTTC	3 cut(s)	102, 145, 171
BstACI	GRCGYC	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstBAI	YACGTR	1 cut(s)	121
BstBI	TTCGAA	1 cut(s)	529
BstC8I	GCNNGC	7 cut(s)	21, 28, 34, 60, 641, 645, 759
BstDEI	CTNAG	5 cut(s)	79, 669, 685, 751, 823
BstENI	CCTNNNNNAGG	1 cut(s)	843
BstF5I	GGATG	2 cut(s)	748, 774
BstFNI	CGCG	1 cut(s)	30
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	3 cut(s)	32, 52, 822
BstKTI	GATC	3 cut(s)	104, 200, 867
BstMAI	GTCTC	2 cut(s)	168, 713
BstMBI	GATC	3 cut(s)	101, 197, 864
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 29, 68
BstNI	CCWGG	5 cut(s)	296, 325, 704, 717, 791
BstNSI	RCATGY	1 cut(s)	643
BstSCI	CCNGG	5 cut(s)	294, 323, 702, 715, 789
BstSLI	GKGCMC	2 cut(s)	126, 377
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	3 cut(s)	35, 376, 773
BsuRI	GGCC	3 cut(s)	76, 284, 386
BtsCI	GGATG	2 cut(s)	748, 774
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	5 cut(s)	216, 375, 453, 657, 831
Cac8I	GCNNGC	7 cut(s)	21, 28, 34, 60, 641, 645, 759
CfoI	GCGC	3 cut(s)	32, 52, 822
Cfr10I	RCCGGY	3 cut(s)	19, 32, 458
Cfr13I	GGNCC	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	328, 505
CviAII	CATG	1 cut(s)	640
CviQI	GTAC	2 cut(s)	328, 505
DdeI	CTNAG	5 cut(s)	79, 669, 685, 751, 823
DinI	GGCGCC	1 cut(s)	51
DpnI	GATC	3 cut(s)	103, 199, 866
DpnII	GATC	3 cut(s)	101, 197, 864
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	3 cut(s)	102, 145, 171
EarI	CTCTTC	3 cut(s)	102, 145, 171
Eco130I	CCWWGG	2 cut(s)	738, 860
Eco31I	GGTCTC	1 cut(s)	713
Eco57I	CTGAAG	1 cut(s)	825
Eco72I	CACGTG	1 cut(s)	121
EcoNI	CCTNNNNNAGG	1 cut(s)	843
EcoRII	CCWGG	5 cut(s)	294, 323, 702, 715, 789
EcoT14I	CCWWGG	2 cut(s)	738, 860
EgeI	GGCGCC	1 cut(s)	51
EheI	GGCGCC	1 cut(s)	51
ErhI	CCWWGG	2 cut(s)	738, 860
FaeI	CATG	1 cut(s)	643
FaiI	YATR	8 cut(s)	416, 450, 578, 599, 620, 641, 697, 871
FalI	AAGNNNNNCTT	4 cut(s)	194, 226, 214, 246
FaqI	GGGAC	3 cut(s)	669, 711, 807
FatI	CATG	1 cut(s)	639
Fnu4HI	GCNGC	8 cut(s)	24, 48, 180, 365, 387, 474, 762, 765
FokI	GGATG	2 cut(s)	755, 761
Fsp4HI	GCNGC	8 cut(s)	24, 48, 180, 365, 387, 474, 762, 765
FspBI	CTAG	1 cut(s)	861
GlaI	GCGC	3 cut(s)	31, 51, 821
GluI	GCNGC	8 cut(s)	24, 48, 180, 365, 387, 474, 762, 765
GsaI	CCCAGC	1 cut(s)	129
GsuI	CTGGAG	1 cut(s)	278
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	76, 284, 386
HapII	CCGG	3 cut(s)	20, 33, 459
HhaI	GCGC	3 cut(s)	32, 52, 822
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	643
Hin6I	GCGC	3 cut(s)	30, 50, 820
HinP1I	GCGC	3 cut(s)	30, 50, 820
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	2 cut(s)	272, 394
HpaII	CCGG	3 cut(s)	20, 33, 459
HphI	GGTGA	2 cut(s)	205, 426
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	4 cut(s)	112, 277, 520, 844
Hpy188III	TCNNGA	1 cut(s)	334
Hpy8I	GTNNAC	1 cut(s)	375
HpyAV	CCTTC	5 cut(s)	180, 220, 274, 839, 849
HpyCH4III	ACNGT	4 cut(s)	220, 379, 652, 725
HpyCH4IV	ACGT	2 cut(s)	8, 120
HpyCH4V	TGCA	5 cut(s)	4, 375, 551, 643, 757
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 29, 68
HpyF3I	CTNAG	5 cut(s)	79, 669, 685, 751, 823
HpySE526I	ACGT	2 cut(s)	8, 120
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	643
HspAI	GCGC	3 cut(s)	30, 50, 820
KasI	GGCGCC	1 cut(s)	49
KroI	GCCGGC	2 cut(s)	19, 32
KroNI	GCCGGC	2 cut(s)	21, 34
Kzo9I	GATC	3 cut(s)	101, 197, 864
LmnI	GCTCC	4 cut(s)	187, 294, 562, 582
Lsp1109I	GCAGC	3 cut(s)	35, 376, 773
MaeI	CTAG	1 cut(s)	861
MaeII	ACGT	2 cut(s)	8, 120
MaeIII	GTNAC	5 cut(s)	64, 432, 542, 719, 826
MalI	GATC	3 cut(s)	103, 199, 866
MbiI	CCGCTC	1 cut(s)	182
MboI	GATC	3 cut(s)	101, 197, 864
MboII	GAAGA	9 cut(s)	89, 132, 135, 138, 141, 144, 158, 222, 543
MhlI	GDGCHC	3 cut(s)	126, 320, 377
MluCI	AATT	1 cut(s)	240
Mly113I	GGCGCC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	8 cut(s)	105, 188, 302, 330, 524, 570, 573, 694
MroNI	GCCGGC	2 cut(s)	19, 32
MroXI	GAANNNNTTC	1 cut(s)	849
MseI	TTAA	1 cut(s)	587
MslI	CAYNNNNRTG	2 cut(s)	380, 485
MspA1I	CMGCKG	4 cut(s)	62, 367, 389, 764
MspI	CCGG	3 cut(s)	20, 33, 459
MspR9I	CCNGG	5 cut(s)	296, 325, 704, 717, 791
Mva1269I	GAATGC	2 cut(s)	476, 849
MvaI	CCWGG	5 cut(s)	296, 325, 704, 717, 791
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	10, 29, 68
NaeI	GCCGGC	2 cut(s)	21, 34
NarI	GGCGCC	1 cut(s)	50
NdeII	GATC	3 cut(s)	101, 197, 864
NgoMIV	GCCGGC	2 cut(s)	19, 32
NlaIII	CATG	1 cut(s)	643
NlaIV	GGNNCC	2 cut(s)	51, 558
NmeAIII	GCCGAG	1 cut(s)	52
NmuCI	GTSAC	4 cut(s)	64, 432, 542, 826
NspI	RCATGY	1 cut(s)	643
NspV	TTCGAA	1 cut(s)	529
OliI	CACNNNNGTG	1 cut(s)	380
PaeI	GCATGC	1 cut(s)	643
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PctI	GAATGC	2 cut(s)	476, 849
PdiI	GCCGGC	2 cut(s)	21, 34
PdmI	GAANNNNTTC	1 cut(s)	849
PfeI	GAWTC	2 cut(s)	272, 394
PkrI	GCNGC	8 cut(s)	25, 49, 181, 366, 388, 475, 763, 766
PluTI	GGCGCC	1 cut(s)	53
PmaCI	CACGTG	1 cut(s)	121
PmlI	CACGTG	1 cut(s)	121
Ppu21I	YACGTR	1 cut(s)	121
PsiI	TTATAA	2 cut(s)	416, 578
Psp1406I	AACGTT	1 cut(s)	8
Psp6I	CCWGG	5 cut(s)	294, 323, 702, 715, 789
PspCI	CACGTG	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	5 cut(s)	294, 323, 702, 715, 789
PspN4I	GGNNCC	2 cut(s)	51, 558
PspPI	GGNCC	1 cut(s)	75
PvuII	CAGCTG	2 cut(s)	62, 367
RsaI	GTAC	2 cut(s)	329, 506
RsaNI	GTAC	2 cut(s)	328, 505
RseI	CAYNNNNRTG	2 cut(s)	380, 485
SaqAI	TTAA	1 cut(s)	587
SatI	GCNGC	8 cut(s)	24, 48, 180, 365, 387, 474, 762, 765
Sau3AI	GATC	3 cut(s)	101, 197, 864
Sau96I	GGNCC	1 cut(s)	75
ScrFI	CCNGG	5 cut(s)	296, 325, 704, 717, 791
SduI	GDGCHC	3 cut(s)	126, 320, 377
SfoI	GGCGCC	1 cut(s)	51
SfuI	TTCGAA	1 cut(s)	529
SmiMI	CAYNNNNRTG	2 cut(s)	380, 485
SphI	GCATGC	1 cut(s)	643
Sse9I	AATT	1 cut(s)	240
SsiI	CCGC	9 cut(s)	47, 56, 115, 180, 387, 437, 473, 537, 764
SspDI	GGCGCC	1 cut(s)	49
SspMI	CTAG	1 cut(s)	861
StyD4I	CCNGG	5 cut(s)	294, 323, 702, 715, 789
StyI	CCWWGG	2 cut(s)	738, 860
TaaI	ACNGT	4 cut(s)	220, 379, 652, 725
TaiI	ACGT	2 cut(s)	11, 123
TaqI	TCGA	2 cut(s)	100, 529
TasI	AATT	1 cut(s)	240
TauI	GCSGC	5 cut(s)	50, 182, 389, 476, 767
TfiI	GAWTC	2 cut(s)	272, 394
Tru1I	TTAA	1 cut(s)	587
Tru9I	TTAA	1 cut(s)	587
TscAI	CASTG	5 cut(s)	223, 382, 460, 657, 831
TseFI	GTSAC	4 cut(s)	64, 432, 542, 826
TseI	GCWGC	3 cut(s)	23, 364, 761
Tsp45I	GTSAC	4 cut(s)	64, 432, 542, 826
TspDTI	ATGAA	4 cut(s)	162, 285, 390, 469
TspRI	CASTG	5 cut(s)	223, 382, 460, 657, 831
VneI	GTGCAC	1 cut(s)	373
XagI	CCTNNNNNAGG	1 cut(s)	843
XceI	RCATGY	1 cut(s)	643
XmaJI	CCTAGG	1 cut(s)	860
XmnI	GAANNNNTTC	1 cut(s)	849
XspI	CTAG	1 cut(s)	861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.