Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0013039

Physical Location & Seq

Genomic Coordinates Reverse (-)

6619857 .. 6621943

Gene Structure 2087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG064400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCAAACACTACTATCGCCGGCAGCTCGCTCCGGCTTTTTCCCGTCGGCGCCACCGCAGGCCGCCCCGGCTCGTCCCTCCGCTTATCACCTCCCTCTACGATCAATCCCCGCCTGCCACGTCCCCAACCTCACTCTCTCTCCTTCCTCGCCTCTAAATCACAGAGGATCAAACCTCTCCTTGGCCACTATTGTAAGGGCCTCTTCTACTCCAGTTTCTCAGACTTTCACTCCCCCCGGCGACGAATCCGAAAAGGCCAAGCTCCTCCAGGTAGCTAAGAGGTTAGAGAGCACGGCGAGGTATTTCAAGAGGTTGGGTAGTCTAGGGTTTTGGGGACAGCTGGTGTGCACTGTTGTGGCTGCTGTGATTCTTTCGTTTTCGGTTGTTATAACTGGGAAGATTTCGTCGCCGCCTACATTTTATGCCACTGCCGGTGGGATTGTTGCCGCCTTCATTTCTGTGTTTTGGTCATTCGGGTACATTCGGCTATCGGATAAGCTTCGGAAAACTGCGAGTGACCCTGCTAAGGCCCCTCCTCGTGCTGATGTTATCAAAAGCTTAAGGAATGGCATTGGACTGAACCTTTTGGGTATGGGTGCTGCTGTTCTTGGTATGCAAGCCACAGTGGGAATATTGGTTGCTAAGGCTCTTACGTCCTCAGCAACTCCATATTACCAGGGTATCTCTCCTGGCTACAGTCCTGTTCTTGCATTGGATGTATTCTTGGTGCAGGCATCCGCAAACACTATCCTTTCACATTTCTTGGGGCTTGTTTTCTCATTAGAGCTGTTGCGCTCGGTGTCATTGCCACCTGCAGAAGGCAGTCCCATTCCTAGGATGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006873 GO:0006875 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019725 GO:0019866 GO:0030003 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042592 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055080 GO:0055082 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3611

Protein Analysis

281

Amino Acids

29.5

Weight (kDa)

10.25

Isoelectric Point (pI)

55.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3611	PF12263	93 - 267	5e-55	Protein of unknown function (DUF3611)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15290
fragaria_vesca	FvH4_2g05240
malus_domestica	MD05G1088600.v1.1 MD10G1096700.v1.1
prunus_persica	Prupe.8G134600_v2.0.a1 Prupe.8G134600_v2.0.a1
pyrus_communis	pycom05g08800 pycom10g08280
rosa_chinensis	RchiOBHm_Chr6g0255371
rosa_laevigata	RLG00000014843
rosa_multiflora	Rmu_co8499097.1_g000001 Rmu_sc0002360.1_g000018
rosa_roxburghii	Rroxscaffold_7G00210040
rosa_rugosa	Rorug05G0557700
rosa_samantha	Rh6AG075500 Rh6BG068100 Rh6CG067800 Rh6DG064400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	389
AarI	CACCTGC	1 cut(s)	820
Acc36I	ACCTGC	1 cut(s)	820
AccB1I	GGYRCC	1 cut(s)	49
AciI	CCGC	7 cut(s)	56, 63, 81, 111, 410, 447, 738
AclWI	GGATC	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	183
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	4 cut(s)	181, 526, 818, 834
AflII	CTTAAG	1 cut(s)	559
AgsI	TTSAA	1 cut(s)	307
AjiI	CACGTC	1 cut(s)	121
AjnI	CCWGG	3 cut(s)	267, 675, 688
AleI	CACNNNNGTG	1 cut(s)	353
AluBI	AGCT	7 cut(s)	26, 262, 275, 340, 499, 558, 787
AluI	AGCT	7 cut(s)	26, 262, 275, 340, 499, 558, 787
Alw21I	GWGCWC	2 cut(s)	293, 350
Alw44I	GTGCAC	1 cut(s)	346
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	5 cut(s)	60, 183, 198, 255, 528
ApaLI	GTGCAC	1 cut(s)	346
ApeKI	GCWGC	3 cut(s)	23, 359, 599
AspA2I	CCTAGG	1 cut(s)	833
AspLEI	GCGC	2 cut(s)	52, 795
AspS9I	GGNCC	2 cut(s)	198, 529
AsuC2I	CCSGG	2 cut(s)	68, 237
AsuHPI	GGTGA	1 cut(s)	80
AvrII	CCTAGG	1 cut(s)	833
BaeGI	GKGCMC	1 cut(s)	350
BaeI	ACNNNNGTAYC	2 cut(s)	664, 697
BalI	TGGCCA	1 cut(s)	185
BanI	GGYRCC	1 cut(s)	49
BauI	CACGAG	1 cut(s)	537
Bbv12I	GWGCWC	2 cut(s)	293, 350
BbvCI	CCTCAGC	1 cut(s)	658
BbvI	GCAGC	3 cut(s)	35, 346, 586
BccI	CCATC	1 cut(s)	832
BceAI	ACGGC	1 cut(s)	309
BciT130I	CCWGG	3 cut(s)	269, 677, 690
BcnI	CCSGG	2 cut(s)	68, 237
BfaI	CTAG	2 cut(s)	323, 834
BfmI	CTRYAG	2 cut(s)	694, 813
BfoI	RGCGCY	1 cut(s)	53
BfrI	CTTAAG	1 cut(s)	559
BfuAI	ACCTGC	1 cut(s)	820
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	6 cut(s)	24, 63, 360, 410, 447, 600
BlnI	CCTAGG	1 cut(s)	833
BlsI	GCNGC	6 cut(s)	25, 64, 361, 411, 448, 601
Bme1390I	CCNGG	5 cut(s)	68, 237, 269, 677, 690
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	198, 529
BmiI	GGNNCC	2 cut(s)	51, 531
BmrFI	CCNGG	5 cut(s)	68, 237, 269, 677, 690
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	1 cut(s)	743
BmuI	ACTGGG	1 cut(s)	402
BpmI	CTGGAG	2 cut(s)	195, 251
Bpu10I	CCTNAGC	3 cut(s)	525, 642, 658
BpuMI	CCSGG	2 cut(s)	68, 237
BsaHI	GRCGYC	1 cut(s)	50
BsaJI	CCNNGG	5 cut(s)	66, 180, 235, 676, 833
BsaXI	ACNNNNNCTCC	4 cut(s)	124, 154, 214, 244
Bsc4I	CCNNNNNNNGG	4 cut(s)	181, 526, 818, 834
Bse118I	RCCGGY	2 cut(s)	19, 431
Bse1I	ACTGG	2 cut(s)	212, 397
Bse3DI	GCAATG	1 cut(s)	803
BseBI	CCWGG	3 cut(s)	269, 677, 690
BseDI	CCNNGG	5 cut(s)	66, 180, 235, 676, 833
BseGI	GGATG	3 cut(s)	721, 734, 843
BseLI	CCNNNNNNNGG	4 cut(s)	181, 526, 818, 834
BseMI	GCAATG	1 cut(s)	803
BseMII	CTCAG	2 cut(s)	233, 672
BseNI	ACTGG	2 cut(s)	212, 397
BseRI	GAGGAG	2 cut(s)	254, 525
BseSI	GKGCMC	1 cut(s)	350
BseXI	GCAGC	3 cut(s)	35, 346, 586
BsgI	GTGCAG	1 cut(s)	749
BshFI	GGCC	5 cut(s)	62, 185, 200, 257, 530
BshNI	GGYRCC	1 cut(s)	49
BsiHKAI	GWGCWC	2 cut(s)	293, 350
BsiSI	CCGG	5 cut(s)	20, 33, 68, 237, 432
BslFI	GGGAC	4 cut(s)	60, 107, 348, 810
BslI	CCNNNNNNNGG	4 cut(s)	181, 526, 818, 834
BsmFI	GGGAC	4 cut(s)	60, 107, 348, 810
BsnI	GGCC	5 cut(s)	62, 185, 200, 257, 530
Bsp1286I	GDGCHC	2 cut(s)	293, 350
Bsp143I	GATC	2 cut(s)	101, 167
BspACI	CCGC	7 cut(s)	56, 63, 81, 111, 410, 447, 738
BspANI	GGCC	5 cut(s)	62, 185, 200, 257, 530
BspCNI	CTCAG	2 cut(s)	232, 671
BspLI	GGNNCC	2 cut(s)	51, 531
BspMAI	CTGCAG	1 cut(s)	817
BspMI	ACCTGC	1 cut(s)	820
BspPI	GGATC	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	49
BspTI	CTTAAG	1 cut(s)	559
BsrDI	GCAATG	1 cut(s)	803
BsrFI	RCCGGY	2 cut(s)	19, 431
BsrI	ACTGG	2 cut(s)	212, 397
BssAI	RCCGGY	2 cut(s)	19, 431
BssECI	CCNNGG	5 cut(s)	66, 180, 235, 676, 833
BssMI	GATC	2 cut(s)	101, 167
BssNI	GRCGYC	1 cut(s)	50
BssSI	CACGAG	1 cut(s)	537
BssT1I	CCWWGG	2 cut(s)	180, 833
Bst2BI	CACGAG	1 cut(s)	537
Bst2UI	CCWGG	3 cut(s)	269, 677, 690
Bst4CI	ACNGT	3 cut(s)	352, 625, 698
Bst6I	CTCTTC	1 cut(s)	208
BstACI	GRCGYC	1 cut(s)	50
BstAFI	CTTAAG	1 cut(s)	559
BstC8I	GCNNGC	6 cut(s)	21, 28, 60, 115, 618, 732
BstDEI	CTNAG	5 cut(s)	219, 276, 525, 642, 658
BstENI	CCTNNNNNAGG	1 cut(s)	816
BstF5I	GGATG	3 cut(s)	721, 734, 843
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	2 cut(s)	52, 795
BstKTI	GATC	2 cut(s)	104, 170
BstMBI	GATC	2 cut(s)	101, 167
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	3 cut(s)	269, 677, 690
BstSCI	CCNGG	5 cut(s)	66, 235, 267, 675, 688
BstSFI	CTRYAG	2 cut(s)	694, 813
BstSLI	GKGCMC	1 cut(s)	350
BstV1I	GCAGC	3 cut(s)	35, 346, 586
BsuRI	GGCC	5 cut(s)	62, 185, 200, 257, 530
BtrI	CACGTC	1 cut(s)	121
BtsCI	GGATG	3 cut(s)	721, 734, 843
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	3 cut(s)	348, 426, 630
BveI	ACCTGC	1 cut(s)	820
Cac8I	GCNNGC	6 cut(s)	21, 28, 60, 115, 618, 732
CfoI	GCGC	2 cut(s)	52, 795
Cfr10I	RCCGGY	2 cut(s)	19, 431
Cfr13I	GGNCC	2 cut(s)	198, 529
Csp6I	GTAC	1 cut(s)	478
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	5 cut(s)	219, 276, 525, 642, 658
DinI	GGCGCC	1 cut(s)	51
DpnI	GATC	2 cut(s)	103, 169
DpnII	GATC	2 cut(s)	101, 167
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
Eco130I	CCWWGG	2 cut(s)	180, 833
EcoNI	CCTNNNNNAGG	1 cut(s)	816
EcoO109I	RGGNCCY	2 cut(s)	198, 529
EcoRII	CCWGG	3 cut(s)	267, 675, 688
EcoT14I	CCWWGG	2 cut(s)	180, 833
EgeI	GGCGCC	1 cut(s)	51
EheI	GGCGCC	1 cut(s)	51
ErhI	CCWWGG	2 cut(s)	180, 833
FaiI	YATR	5 cut(s)	389, 423, 593, 614, 670
FalI	AAGNNNNNCTT	2 cut(s)	187, 219
FaqI	GGGAC	4 cut(s)	60, 107, 348, 810
FauI	CCCGC	1 cut(s)	118
Fnu4HI	GCNGC	6 cut(s)	24, 63, 360, 410, 447, 600
FokI	GGATG	2 cut(s)	721, 728
Fsp4HI	GCNGC	6 cut(s)	24, 63, 360, 410, 447, 600
FspBI	CTAG	2 cut(s)	323, 834
GlaI	GCGC	2 cut(s)	51, 794
GluI	GCNGC	6 cut(s)	24, 63, 360, 410, 447, 600
GsuI	CTGGAG	2 cut(s)	195, 251
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	5 cut(s)	62, 185, 200, 257, 530
HapII	CCGG	5 cut(s)	20, 33, 68, 237, 432
HhaI	GCGC	2 cut(s)	52, 795
Hin1I	GRCGYC	1 cut(s)	50
Hin6I	GCGC	2 cut(s)	50, 793
HinP1I	GCGC	2 cut(s)	50, 793
HindIII	AAGCTT	2 cut(s)	497, 556
HinfI	GANTC	2 cut(s)	245, 367
HpaII	CCGG	5 cut(s)	20, 33, 68, 237, 432
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	4 cut(s)	222, 250, 493, 504
Hpy188III	TCNNGA	1 cut(s)	307
Hpy8I	GTNNAC	1 cut(s)	348
Hpy99I	CGWCG	3 cut(s)	49, 245, 409
HpyAV	CCTTC	3 cut(s)	153, 460, 812
HpyCH4III	ACNGT	3 cut(s)	352, 625, 698
HpyCH4IV	ACGT	2 cut(s)	120, 653
HpyCH4V	TGCA	6 cut(s)	4, 348, 616, 710, 730, 815
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	5 cut(s)	219, 276, 525, 642, 658
HpySE526I	ACGT	2 cut(s)	120, 653
Hsp92I	GRCGYC	1 cut(s)	50
HspAI	GCGC	2 cut(s)	50, 793
KasI	GGCGCC	1 cut(s)	49
KroI	GCCGGC	1 cut(s)	19
KroNI	GCCGGC	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	101, 167
LmnI	GCTCC	2 cut(s)	35, 267
Lsp1109I	GCAGC	3 cut(s)	35, 346, 586
LweI	GCATC	1 cut(s)	743
MaeI	CTAG	2 cut(s)	323, 834
MaeII	ACGT	2 cut(s)	120, 653
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	2 cut(s)	103, 169
MboI	GATC	2 cut(s)	101, 167
MboII	GAAGA	2 cut(s)	195, 409
MhlI	GDGCHC	2 cut(s)	293, 350
MlsI	TGGCCA	1 cut(s)	185
MluNI	TGGCCA	1 cut(s)	185
Mly113I	GGCGCC	1 cut(s)	50
Mox20I	TGGCCA	1 cut(s)	185
MroNI	GCCGGC	1 cut(s)	19
MscI	TGGCCA	1 cut(s)	185
MseI	TTAA	1 cut(s)	560
MslI	CAYNNNNRTG	2 cut(s)	353, 458
Msp20I	TGGCCA	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	340
MspCI	CTTAAG	1 cut(s)	559
MspI	CCGG	5 cut(s)	20, 33, 68, 237, 432
MspR9I	CCNGG	5 cut(s)	68, 237, 269, 677, 690
MvaI	CCWGG	3 cut(s)	269, 677, 690
MwoI	GCNNNNNNNGC	1 cut(s)	68
NaeI	GCCGGC	1 cut(s)	21
NarI	GGCGCC	1 cut(s)	50
NciI	CCSGG	2 cut(s)	68, 237
NdeII	GATC	2 cut(s)	101, 167
NgoMIV	GCCGGC	1 cut(s)	19
NlaIV	GGNNCC	2 cut(s)	51, 531
NmuCI	GTSAC	1 cut(s)	515
OliI	CACNNNNGTG	1 cut(s)	353
PaqCI	CACCTGC	1 cut(s)	820
PdiI	GCCGGC	1 cut(s)	21
PfeI	GAWTC	2 cut(s)	245, 367
PkrI	GCNGC	6 cut(s)	25, 64, 361, 411, 448, 601
PluTI	GGCGCC	1 cut(s)	53
PsiI	TTATAA	1 cut(s)	389
Psp6I	CCWGG	3 cut(s)	267, 675, 688
PspGI	CCWGG	3 cut(s)	267, 675, 688
PspN4I	GGNNCC	2 cut(s)	51, 531
PspPI	GGNCC	2 cut(s)	198, 529
PstI	CTGCAG	1 cut(s)	817
PvuII	CAGCTG	1 cut(s)	340
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
RseI	CAYNNNNRTG	2 cut(s)	353, 458
SaqAI	TTAA	1 cut(s)	560
SatI	GCNGC	6 cut(s)	24, 63, 360, 410, 447, 600
Sau3AI	GATC	2 cut(s)	101, 167
Sau96I	GGNCC	2 cut(s)	198, 529
ScrFI	CCNGG	5 cut(s)	68, 237, 269, 677, 690
SduI	GDGCHC	2 cut(s)	293, 350
SfaNI	GCATC	1 cut(s)	743
SfcI	CTRYAG	2 cut(s)	694, 813
SfoI	GGCGCC	1 cut(s)	51
SmiMI	CAYNNNNRTG	2 cut(s)	353, 458
SmlI	CTYRAG	1 cut(s)	559
SmoI	CTYRAG	1 cut(s)	559
SsiI	CCGC	7 cut(s)	56, 63, 81, 111, 410, 447, 738
SspDI	GGCGCC	1 cut(s)	49
SspI	AATATT	1 cut(s)	633
SspMI	CTAG	2 cut(s)	323, 834
StyD4I	CCNGG	5 cut(s)	66, 235, 267, 675, 688
StyI	CCWWGG	2 cut(s)	180, 833
TaaI	ACNGT	3 cut(s)	352, 625, 698
TaiI	ACGT	2 cut(s)	123, 656
TauI	GCSGC	3 cut(s)	65, 412, 449
TfiI	GAWTC	2 cut(s)	245, 367
Tru1I	TTAA	1 cut(s)	560
Tru9I	TTAA	1 cut(s)	560
TscAI	CASTG	3 cut(s)	355, 433, 630
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	3 cut(s)	23, 359, 599
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	1 cut(s)	442
TspRI	CASTG	3 cut(s)	355, 433, 630
Vha464I	CTTAAG	1 cut(s)	559
VneI	GTGCAC	1 cut(s)	346
XagI	CCTNNNNNAGG	1 cut(s)	816
XcmI	CCANNNNNNNNNTGG	1 cut(s)	835
XmaJI	CCTAGG	1 cut(s)	833
XspI	CTAG	2 cut(s)	323, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.