Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0013039

Physical Location & Seq

Genomic Coordinates Forward (+)

11589218 .. 11591028

Gene Structure 1811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g08800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGCAAACTTTACTATCGCCTGCGGCTCGCGCCTGCTACTTCACGGCGGCGCCACCTCCAGCTGTCACGACTCGGCCCCTAGCTTATCACCTTCCTCTTCGGTCAATCTCCGACCGCCACGTGCCCAGCCTCCCTCTCTCTTCTTCTTCTTCTTCTTCTTCGTTTTCTTCTCCGTCTCTTTCCTCATACGCTGCTCCCACCCACAGAGGATCAAAGCTCTCCTTCAGCACCATAAGGGCTTCTTCCACTCCAATTTCTCAGACCTTCACCTCCCCAAACGACGACACCGAAAAGGCCAAGCTCCTTCAGGTAGCCAAAAGGTTAGAGAGCACAGCGAGGTATTTCAAGAGGTTGGGTAGTTTAGGCTTTTGGGGGCAGCTGGTGAGCACTGTTGTGGCGGCAGTGATTCTTTCGTTTTCTGTTGTTATCACCGGCAAGGTTTCGTCACCGCCTACTTTTTATGCCACTGCCGGTGGTATTGTGGCGGGTTTTGTCTCCGTGTTTTGGTCATTTGGGTACATTCGCCTCTCGGATAAGCTTCGAAGAACTGCAAGTGACCCTGCAAAGGCTCCTCCGCGCGCTGATGTTATAAAAAGCTTAAAGAATGGCATCATTCTGAACCTTTTGGGTATGGGTGCTGCTGTTCTTGGCATGCAAGCAACGGTGGGACTGTTGGTTGCTAAGGCTCTTACTACCTCTGCGAATCCATATCAGGGTCTCACTCCTGGTTACAGTCCTGTTCTTGCCTTGGATGTATTCTTGGTTCAGGCATCGGCGAACACTATCCTTTCTCACTTCTTGGGACTTGTTTTCTCGCTAGAGCTGTTGCGCTCAGTAACATTGCCACCTTCAGAAGGCATTCCCAGATTCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006873 GO:0006875 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019725 GO:0019866 GO:0030003 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042592 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055080 GO:0055082 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3611

Protein Analysis

292

Amino Acids

30.72

Weight (kDa)

10.31

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15290
fragaria_vesca	FvH4_2g05240
malus_domestica	MD05G1088600.v1.1 MD10G1096700.v1.1
prunus_persica	Prupe.8G134600_v2.0.a1 Prupe.8G134600_v2.0.a1
pyrus_communis	pycom05g08800 pycom10g08280
rosa_chinensis	RchiOBHm_Chr6g0255371
rosa_laevigata	RLG00000014843
rosa_multiflora	Rmu_co8499097.1_g000001 Rmu_sc0002360.1_g000018
rosa_roxburghii	Rroxscaffold_7G00210040
rosa_rugosa	Rorug05G0557700
rosa_samantha	Rh6AG075500 Rh6BG068100 Rh6CG067800 Rh6DG064400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	590
AccB1I	GGYRCC	1 cut(s)	49
AccII	CGCG	3 cut(s)	30, 577, 579
AciI	CCGC	7 cut(s)	23, 47, 115, 398, 449, 485, 575
AclWI	GGATC	1 cut(s)	217
AcuI	CTGAAG	3 cut(s)	208, 290, 834
AcvI	CACGTG	1 cut(s)	121
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	4 cut(s)	504, 565, 713, 854
AgsI	TTSAA	1 cut(s)	346
AjnI	CCWGG	1 cut(s)	724
AleI	CACNNNNGTG	1 cut(s)	392
AluBI	AGCT	8 cut(s)	62, 83, 217, 301, 379, 538, 597, 823
AluI	AGCT	8 cut(s)	62, 83, 217, 301, 379, 538, 597, 823
Alw21I	GWGCWC	2 cut(s)	332, 389
Alw26I	GTCTC	3 cut(s)	180, 499, 722
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	2 cut(s)	74, 294
ApeKI	GCWGC	3 cut(s)	191, 376, 638
Asp700I	GAANNNNTTC	1 cut(s)	858
AspLEI	GCGC	5 cut(s)	32, 52, 579, 581, 831
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	5 cut(s)	80, 259, 394, 421, 438
AsuII	TTCGAA	1 cut(s)	541
BaeGI	GKGCMC	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	49
BbrPI	CACGTG	1 cut(s)	121
Bbv12I	GWGCWC	2 cut(s)	332, 389
BbvI	GCAGC	3 cut(s)	178, 388, 625
BceAI	ACGGC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	726
BcoDI	GTCTC	3 cut(s)	180, 499, 722
BfaI	CTAG	2 cut(s)	80, 818
BfoI	RGCGCY	1 cut(s)	53
BisI	GCNGC	6 cut(s)	24, 48, 192, 377, 399, 639
BlsI	GCNGC	6 cut(s)	25, 49, 193, 378, 400, 640
Bme1390I	CCNGG	1 cut(s)	726
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	3 cut(s)	51, 77, 570
BmrFI	CCNGG	1 cut(s)	726
BmsI	GCATC	2 cut(s)	618, 779
BpmI	CTGGAG	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	681
Bpu14I	TTCGAA	1 cut(s)	541
BsaAI	YACGTR	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	722
BsaJI	CCNNGG	1 cut(s)	747
Bsc4I	CCNNNNNNNGG	4 cut(s)	504, 565, 713, 854
Bse118I	RCCGGY	2 cut(s)	431, 470
Bse3DI	GCAATG	1 cut(s)	839
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	1 cut(s)	747
BseGI	GGATG	1 cut(s)	757
BseLI	CCNNNNNNNGG	4 cut(s)	504, 565, 713, 854
BseMI	GCAATG	1 cut(s)	839
BseMII	CTCAG	2 cut(s)	272, 846
BsePI	GCGCGC	1 cut(s)	577
BseRI	GAGGAG	1 cut(s)	561
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	3 cut(s)	178, 388, 625
BseYI	CCCAGC	1 cut(s)	125
Bsh1236I	CGCG	3 cut(s)	30, 577, 579
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	2 cut(s)	76, 296
BshNI	GGYRCC	1 cut(s)	49
BsiEI	CGRYCG	1 cut(s)	115
BsiHKAI	GWGCWC	2 cut(s)	332, 389
BsiSI	CCGG	2 cut(s)	432, 471
BslFI	GGGAC	2 cut(s)	681, 816
BslI	CCNNNNNNNGG	4 cut(s)	504, 565, 713, 854
BsmAI	GTCTC	3 cut(s)	180, 499, 722
BsmBI	CGTCTC	1 cut(s)	180
BsmFI	GGGAC	2 cut(s)	681, 816
BsmI	GAATGC	1 cut(s)	858
BsnI	GGCC	2 cut(s)	76, 296
Bso31I	GGTCTC	1 cut(s)	722
Bsp119I	TTCGAA	1 cut(s)	541
Bsp1286I	GDGCHC	3 cut(s)	126, 332, 389
Bsp143I	GATC	1 cut(s)	209
BspACI	CCGC	7 cut(s)	23, 47, 115, 398, 449, 485, 575
BspANI	GGCC	2 cut(s)	76, 296
BspCNI	CTCAG	2 cut(s)	271, 845
BspFNI	CGCG	3 cut(s)	30, 577, 579
BspLI	GGNNCC	3 cut(s)	51, 77, 570
BspPI	GGATC	1 cut(s)	217
BspT104I	TTCGAA	1 cut(s)	541
BspT107I	GGYRCC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	722
BsrDI	GCAATG	1 cut(s)	839
BsrFI	RCCGGY	2 cut(s)	431, 470
BssAI	RCCGGY	2 cut(s)	431, 470
BssECI	CCNNGG	1 cut(s)	747
BssHII	GCGCGC	1 cut(s)	577
BssMI	GATC	1 cut(s)	209
BssNI	GRCGYC	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	747
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	4 cut(s)	391, 664, 672, 734
Bst6I	CTCTTC	2 cut(s)	102, 145
BstACI	GRCGYC	1 cut(s)	50
BstBAI	YACGTR	1 cut(s)	121
BstBI	TTCGAA	1 cut(s)	541
BstC8I	GCNNGC	6 cut(s)	21, 28, 34, 579, 653, 657
BstDEI	CTNAG	3 cut(s)	258, 681, 832
BstENI	CCTNNNNNAGG	1 cut(s)	852
BstF5I	GGATG	1 cut(s)	757
BstFNI	CGCG	3 cut(s)	30, 577, 579
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	5 cut(s)	32, 52, 579, 581, 831
BstKTI	GATC	1 cut(s)	212
BstMAI	GTCTC	3 cut(s)	180, 499, 722
BstMBI	GATC	1 cut(s)	209
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	1 cut(s)	726
BstNSI	RCATGY	1 cut(s)	655
BstSCI	CCNGG	1 cut(s)	724
BstSLI	GKGCMC	1 cut(s)	126
BstUI	CGCG	3 cut(s)	30, 577, 579
BstV1I	GCAGC	3 cut(s)	178, 388, 625
BsuRI	GGCC	2 cut(s)	76, 296
BtsCI	GGATG	1 cut(s)	757
BtsI	GCAGTG	2 cut(s)	408, 465
BtsIMutI	CAGTG	3 cut(s)	387, 408, 465
Cac8I	GCNNGC	6 cut(s)	21, 28, 34, 579, 653, 657
CfoI	GCGC	5 cut(s)	32, 52, 579, 581, 831
Cfr10I	RCCGGY	2 cut(s)	431, 470
Cfr13I	GGNCC	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	1 cut(s)	652
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	3 cut(s)	258, 681, 832
DinI	GGCGCC	1 cut(s)	51
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
Eam1104I	CTCTTC	2 cut(s)	102, 145
EarI	CTCTTC	2 cut(s)	102, 145
Eco130I	CCWWGG	1 cut(s)	747
Eco31I	GGTCTC	1 cut(s)	722
Eco57I	CTGAAG	3 cut(s)	208, 290, 834
Eco72I	CACGTG	1 cut(s)	121
EcoNI	CCTNNNNNAGG	1 cut(s)	852
EcoRII	CCWGG	1 cut(s)	724
EcoT14I	CCWWGG	1 cut(s)	747
EgeI	GGCGCC	1 cut(s)	51
EheI	GGCGCC	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	747
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	1 cut(s)	655
FaiI	YATR	8 cut(s)	187, 233, 462, 590, 632, 653, 709, 874
FalI	AAGNNNNNCTT	4 cut(s)	206, 238, 226, 258
FaqI	GGGAC	2 cut(s)	681, 816
FatI	CATG	1 cut(s)	651
FauI	CCCGC	1 cut(s)	478
Fnu4HI	GCNGC	6 cut(s)	24, 48, 192, 377, 399, 639
FokI	GGATG	1 cut(s)	764
Fsp4HI	GCNGC	6 cut(s)	24, 48, 192, 377, 399, 639
FspBI	CTAG	2 cut(s)	80, 818
GlaI	GCGC	5 cut(s)	31, 51, 578, 580, 830
GluI	GCNGC	6 cut(s)	24, 48, 192, 377, 399, 639
GsaI	CCCAGC	1 cut(s)	129
GsuI	CTGGAG	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	2 cut(s)	76, 296
HapII	CCGG	2 cut(s)	432, 471
HhaI	GCGC	5 cut(s)	32, 52, 579, 581, 831
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	655
Hin6I	GCGC	5 cut(s)	30, 50, 577, 579, 829
HinP1I	GCGC	5 cut(s)	30, 50, 577, 579, 829
HindIII	AAGCTT	2 cut(s)	536, 595
HinfI	GANTC	4 cut(s)	70, 406, 703, 867
HpaII	CCGG	2 cut(s)	432, 471
HphI	GGTGA	5 cut(s)	80, 259, 394, 421, 438
Hpy188I	TCNGA	5 cut(s)	112, 261, 532, 618, 853
Hpy188III	TCNNGA	2 cut(s)	67, 346
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	6 cut(s)	101, 232, 274, 314, 848, 858
HpyCH4III	ACNGT	4 cut(s)	391, 664, 672, 734
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	4 cut(s)	4, 551, 563, 655
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	3 cut(s)	258, 681, 832
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	655
HspAI	GCGC	5 cut(s)	30, 50, 577, 579, 829
KasI	GGCGCC	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	209
LmnI	GCTCC	3 cut(s)	199, 306, 574
Lsp1109I	GCAGC	3 cut(s)	178, 388, 625
LweI	GCATC	2 cut(s)	618, 779
MaeI	CTAG	2 cut(s)	80, 818
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	5 cut(s)	64, 444, 554, 728, 835
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MhlI	GDGCHC	3 cut(s)	126, 332, 389
MluCI	AATT	1 cut(s)	252
Mly113I	GGCGCC	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	64
MmeI	TCCRAC	1 cut(s)	135
MroXI	GAANNNNTTC	1 cut(s)	858
MseI	TTAA	1 cut(s)	599
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	2 cut(s)	62, 379
MspI	CCGG	2 cut(s)	432, 471
MspR9I	CCNGG	1 cut(s)	726
Mva1269I	GAATGC	1 cut(s)	858
MvaI	CCWGG	1 cut(s)	726
MvnI	CGCG	3 cut(s)	30, 577, 579
MwoI	GCNNNNNNNGC	1 cut(s)	29
NarI	GGCGCC	1 cut(s)	50
NdeII	GATC	1 cut(s)	209
NlaIII	CATG	1 cut(s)	655
NlaIV	GGNNCC	3 cut(s)	51, 77, 570
NmeAIII	GCCGAG	1 cut(s)	52
NmuCI	GTSAC	3 cut(s)	64, 444, 554
NspI	RCATGY	1 cut(s)	655
NspV	TTCGAA	1 cut(s)	541
OliI	CACNNNNGTG	1 cut(s)	392
PaeI	GCATGC	1 cut(s)	655
PauI	GCGCGC	1 cut(s)	577
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PctI	GAATGC	1 cut(s)	858
PdmI	GAANNNNTTC	1 cut(s)	858
PfeI	GAWTC	3 cut(s)	406, 703, 867
PkrI	GCNGC	6 cut(s)	25, 49, 193, 378, 400, 640
PleI	GAGTC	1 cut(s)	64
PluTI	GGCGCC	1 cut(s)	53
PmaCI	CACGTG	1 cut(s)	121
PmlI	CACGTG	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	64
Ppu21I	YACGTR	1 cut(s)	121
PsiI	TTATAA	1 cut(s)	590
Psp6I	CCWGG	1 cut(s)	724
PspCI	CACGTG	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	3 cut(s)	51, 77, 570
PspPI	GGNCC	1 cut(s)	75
PsrI	GAACNNNNNNTAC	2 cut(s)	747, 779
PteI	GCGCGC	1 cut(s)	577
PvuII	CAGCTG	2 cut(s)	62, 379
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	599
SatI	GCNGC	6 cut(s)	24, 48, 192, 377, 399, 639
Sau3AI	GATC	1 cut(s)	209
Sau96I	GGNCC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	726
SduI	GDGCHC	3 cut(s)	126, 332, 389
SfaNI	GCATC	2 cut(s)	618, 779
SfoI	GGCGCC	1 cut(s)	51
SfuI	TTCGAA	1 cut(s)	541
SmiMI	CAYNNNNRTG	1 cut(s)	392
SphI	GCATGC	1 cut(s)	655
Sse9I	AATT	1 cut(s)	252
SsiI	CCGC	7 cut(s)	23, 47, 115, 398, 449, 485, 575
SspDI	GGCGCC	1 cut(s)	49
SspMI	CTAG	2 cut(s)	80, 818
StyD4I	CCNGG	1 cut(s)	724
StyI	CCWWGG	1 cut(s)	747
TaaI	ACNGT	4 cut(s)	391, 664, 672, 734
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	1 cut(s)	541
TaqII	GACCGA	1 cut(s)	90
TasI	AATT	1 cut(s)	252
TauI	GCSGC	3 cut(s)	26, 50, 401
TfiI	GAWTC	3 cut(s)	406, 703, 867
Tru1I	TTAA	1 cut(s)	599
Tru9I	TTAA	1 cut(s)	599
TscAI	CASTG	3 cut(s)	394, 408, 472
TseFI	GTSAC	3 cut(s)	64, 444, 554
TseI	GCWGC	3 cut(s)	191, 376, 638
Tsp45I	GTSAC	3 cut(s)	64, 444, 554
TspGWI	ACGGA	2 cut(s)	162, 487
TspRI	CASTG	3 cut(s)	394, 408, 472
XagI	CCTNNNNNAGG	1 cut(s)	852
XceI	RCATGY	1 cut(s)	655
XmnI	GAANNNNTTC	1 cut(s)	858
XspI	CTAG	2 cut(s)	80, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.