Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013039

Physical Location & Seq

Genomic Coordinates Forward (+)

18931328 .. 18933494

Gene Structure 2167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1088600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCAAACTCTACTATCGCCCGCGGCTCGCGCCGGCTACTTCACGGCGGCGCCACCTCCAGCTGTCACGACTCGGCCCCTAGCTTATCACCTTCCTCTTCGGTCAATCTCCGACCGCCACGTGCCCGGCCTCCCTCTCTCTTCTTCTTCTTCGTTTTCTTCTCCGTCTCTTGCCTCATACGCTGCTCCCACCCACAGAGGATCAAAGCTCTCCTTCAGCACCATAAGGGCTTCTTCCACTCCAATTTCTCAGACCTTCACCTCCCCAAACGACGACACCGAAAAGGCCAAGCTCCTTCAGGTAGCCAAAAGGTTAGAGAGCACAGCGAGGTATTTCAAGCGGTTGGGTAGTTTAGGGTTTTGGGGGCAGCTGGTGAGCACCGTTGTGGCGGCAGTGATTCTTTCGTTTTCTGTTGTTATCACCGGCAAGGTTTCTTCACCGCCTACTTTTTATGCCACTGCCGGTGGGATTGTGGCGGGTTTCATCTCCGTGTTTTGGTCATTTGGGTACATTCGCCTCTCGGATAAGCTTCGAAGAACTGCAAGTGACCCTGCAAAGGCTCCTCCGCGCGCTGATGTTATAAAAAGCTTAAAGAATGGCATCATTCTGAACCTTTTGGGTATGGGTGCTGCTGTCCTTGGCATGCAAGCAACGGTGGGACTGTTGGTTGCAAAGGCTCTTACTACCTCTGCGAATCCGTATCAGGGTCTCACTCCTGGTTACAGTCCTGTTCTTGCCTTGGATGTGTTCTTGGTTCAGGCATCGGCGAACACTATCCTCTCTCACTTCTTGGGACTTGTTTTCTCGCTAGAGCTGTTGCGCTCAGTAACATTGCCACCTTCGGAAGGCATTCCCATTCCCAGATTCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006873 GO:0006875 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019725 GO:0019866 GO:0030003 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042592 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055080 GO:0055082 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3611

Protein Analysis

291

Amino Acids

30.59

Weight (kDa)

10.4

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3611	PF12263	103 - 276	7.4e-55	Protein of unknown function (DUF3611)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15290
fragaria_vesca	FvH4_2g05240
malus_domestica	MD05G1088600.v1.1 MD10G1096700.v1.1
prunus_persica	Prupe.8G134600_v2.0.a1 Prupe.8G134600_v2.0.a1
pyrus_communis	pycom05g08800 pycom10g08280
rosa_chinensis	RchiOBHm_Chr6g0255371
rosa_laevigata	RLG00000014843
rosa_multiflora	Rmu_co8499097.1_g000001 Rmu_sc0002360.1_g000018
rosa_roxburghii	Rroxscaffold_7G00210040
rosa_rugosa	Rorug05G0557700
rosa_samantha	Rh6AG075500 Rh6BG068100 Rh6CG067800 Rh6DG064400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	581
AccB1I	GGYRCC	1 cut(s)	49
AccII	CGCG	4 cut(s)	23, 30, 568, 570
AciI	CCGC	9 cut(s)	21, 23, 47, 115, 340, 389, 440, 476, 566
AclWI	GGATC	1 cut(s)	208
AcuI	CTGAAG	2 cut(s)	199, 281
AcvI	CACGTG	1 cut(s)	121
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	4 cut(s)	495, 556, 704, 845
AgsI	TTSAA	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	715
AleI	CACNNNNGTG	1 cut(s)	383
AluBI	AGCT	8 cut(s)	62, 83, 208, 292, 370, 529, 588, 814
AluI	AGCT	8 cut(s)	62, 83, 208, 292, 370, 529, 588, 814
Alw21I	GWGCWC	2 cut(s)	323, 380
Alw26I	GTCTC	2 cut(s)	171, 713
AlwI	GGATC	1 cut(s)	208
AoxI	GGCC	3 cut(s)	74, 127, 285
ApeKI	GCWGC	3 cut(s)	182, 367, 629
Asp700I	GAANNNNTTC	1 cut(s)	849
AspLEI	GCGC	5 cut(s)	32, 52, 570, 572, 822
AspS9I	GGNCC	1 cut(s)	75
AsuC2I	CCSGG	1 cut(s)	126
AsuHPI	GGTGA	5 cut(s)	80, 250, 385, 412, 429
AsuII	TTCGAA	1 cut(s)	532
BaeGI	GKGCMC	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	49
BbrPI	CACGTG	1 cut(s)	121
Bbv12I	GWGCWC	2 cut(s)	323, 380
BbvI	GCAGC	3 cut(s)	169, 379, 616
BceAI	ACGGC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	717
BcnI	CCSGG	1 cut(s)	126
BcoDI	GTCTC	2 cut(s)	171, 713
BfaI	CTAG	2 cut(s)	80, 809
BfoI	RGCGCY	1 cut(s)	53
BisI	GCNGC	6 cut(s)	24, 48, 183, 368, 390, 630
BlsI	GCNGC	6 cut(s)	25, 49, 184, 369, 391, 631
Bme1390I	CCNGG	2 cut(s)	126, 717
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	3 cut(s)	51, 77, 561
BmrFI	CCNGG	2 cut(s)	126, 717
BmsI	GCATC	2 cut(s)	609, 770
BpmI	CTGGAG	1 cut(s)	42
Bpu14I	TTCGAA	1 cut(s)	532
BpuMI	CCSGG	1 cut(s)	126
BsaAI	YACGTR	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	713
BsaJI	CCNNGG	3 cut(s)	21, 637, 738
Bsc4I	CCNNNNNNNGG	4 cut(s)	495, 556, 704, 845
Bse118I	RCCGGY	3 cut(s)	32, 422, 461
Bse3DI	GCAATG	1 cut(s)	830
BseBI	CCWGG	1 cut(s)	717
BseDI	CCNNGG	3 cut(s)	21, 637, 738
BseGI	GGATG	1 cut(s)	748
BseLI	CCNNNNNNNGG	4 cut(s)	495, 556, 704, 845
BseMI	GCAATG	1 cut(s)	830
BseMII	CTCAG	2 cut(s)	263, 837
BsePI	GCGCGC	1 cut(s)	568
BseRI	GAGGAG	1 cut(s)	552
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	3 cut(s)	169, 379, 616
Bsh1236I	CGCG	4 cut(s)	23, 30, 568, 570
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	3 cut(s)	76, 129, 287
BshNI	GGYRCC	1 cut(s)	49
BsiEI	CGRYCG	1 cut(s)	115
BsiHKAI	GWGCWC	2 cut(s)	323, 380
BsiSI	CCGG	4 cut(s)	33, 126, 423, 462
BslFI	GGGAC	2 cut(s)	672, 807
BslI	CCNNNNNNNGG	4 cut(s)	495, 556, 704, 845
BsmAI	GTCTC	2 cut(s)	171, 713
BsmBI	CGTCTC	1 cut(s)	171
BsmFI	GGGAC	2 cut(s)	672, 807
BsmI	GAATGC	1 cut(s)	849
BsnI	GGCC	3 cut(s)	76, 129, 287
Bso31I	GGTCTC	1 cut(s)	713
Bsp119I	TTCGAA	1 cut(s)	532
Bsp1286I	GDGCHC	3 cut(s)	126, 323, 380
Bsp143I	GATC	1 cut(s)	200
BspACI	CCGC	9 cut(s)	21, 23, 47, 115, 340, 389, 440, 476, 566
BspANI	GGCC	3 cut(s)	76, 129, 287
BspCNI	CTCAG	2 cut(s)	262, 836
BspFNI	CGCG	4 cut(s)	23, 30, 568, 570
BspLI	GGNNCC	3 cut(s)	51, 77, 561
BspPI	GGATC	1 cut(s)	208
BspT104I	TTCGAA	1 cut(s)	532
BspT107I	GGYRCC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	713
BsrDI	GCAATG	1 cut(s)	830
BsrFI	RCCGGY	3 cut(s)	32, 422, 461
BssAI	RCCGGY	3 cut(s)	32, 422, 461
BssECI	CCNNGG	3 cut(s)	21, 637, 738
BssHII	GCGCGC	1 cut(s)	568
BssMI	GATC	1 cut(s)	200
BssNI	GRCGYC	1 cut(s)	50
BssT1I	CCWWGG	2 cut(s)	637, 738
Bst2UI	CCWGG	1 cut(s)	717
Bst4CI	ACNGT	4 cut(s)	382, 655, 663, 725
Bst6I	CTCTTC	2 cut(s)	102, 145
BstACI	GRCGYC	1 cut(s)	50
BstBAI	YACGTR	1 cut(s)	121
BstBI	TTCGAA	1 cut(s)	532
BstC8I	GCNNGC	6 cut(s)	21, 28, 34, 570, 644, 648
BstDEI	CTNAG	2 cut(s)	249, 823
BstDSI	CCRYGG	1 cut(s)	21
BstENI	CCTNNNNNAGG	1 cut(s)	843
BstF5I	GGATG	1 cut(s)	748
BstFNI	CGCG	4 cut(s)	23, 30, 568, 570
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	5 cut(s)	32, 52, 570, 572, 822
BstKTI	GATC	1 cut(s)	203
BstMAI	GTCTC	2 cut(s)	171, 713
BstMBI	GATC	1 cut(s)	200
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 179
BstNI	CCWGG	1 cut(s)	717
BstNSI	RCATGY	1 cut(s)	646
BstSCI	CCNGG	2 cut(s)	124, 715
BstSLI	GKGCMC	1 cut(s)	126
BstUI	CGCG	4 cut(s)	23, 30, 568, 570
BstV1I	GCAGC	3 cut(s)	169, 379, 616
BsuRI	GGCC	3 cut(s)	76, 129, 287
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	748
BtsI	GCAGTG	2 cut(s)	399, 456
BtsIMutI	CAGTG	2 cut(s)	399, 456
Cac8I	GCNNGC	6 cut(s)	21, 28, 34, 570, 644, 648
CfoI	GCGC	5 cut(s)	32, 52, 570, 572, 822
Cfr10I	RCCGGY	3 cut(s)	32, 422, 461
Cfr13I	GGNCC	1 cut(s)	75
Cfr42I	CCGCGG	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	1 cut(s)	643
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	2 cut(s)	249, 823
DinI	GGCGCC	1 cut(s)	51
DpnI	GATC	1 cut(s)	202
DpnII	GATC	1 cut(s)	200
Eam1104I	CTCTTC	2 cut(s)	102, 145
EarI	CTCTTC	2 cut(s)	102, 145
Eco130I	CCWWGG	2 cut(s)	637, 738
Eco31I	GGTCTC	1 cut(s)	713
Eco57I	CTGAAG	2 cut(s)	199, 281
Eco72I	CACGTG	1 cut(s)	121
EcoNI	CCTNNNNNAGG	1 cut(s)	843
EcoRII	CCWGG	1 cut(s)	715
EcoT14I	CCWWGG	2 cut(s)	637, 738
EgeI	GGCGCC	1 cut(s)	51
EheI	GGCGCC	1 cut(s)	51
ErhI	CCWWGG	2 cut(s)	637, 738
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	1 cut(s)	646
FaiI	YATR	7 cut(s)	178, 224, 453, 581, 623, 644, 871
FalI	AAGNNNNNCTT	4 cut(s)	197, 229, 217, 249
FaqI	GGGAC	2 cut(s)	672, 807
FatI	CATG	1 cut(s)	642
FauI	CCCGC	2 cut(s)	28, 469
Fnu4HI	GCNGC	6 cut(s)	24, 48, 183, 368, 390, 630
FokI	GGATG	1 cut(s)	755
Fsp4HI	GCNGC	6 cut(s)	24, 48, 183, 368, 390, 630
FspBI	CTAG	2 cut(s)	80, 809
GlaI	GCGC	5 cut(s)	31, 51, 569, 571, 821
GluI	GCNGC	6 cut(s)	24, 48, 183, 368, 390, 630
GsuI	CTGGAG	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	76, 129, 287
HapII	CCGG	4 cut(s)	33, 126, 423, 462
HhaI	GCGC	5 cut(s)	32, 52, 570, 572, 822
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	646
Hin6I	GCGC	5 cut(s)	30, 50, 568, 570, 820
HinP1I	GCGC	5 cut(s)	30, 50, 568, 570, 820
HindIII	AAGCTT	2 cut(s)	527, 586
HinfI	GANTC	4 cut(s)	70, 397, 694, 864
HpaII	CCGG	4 cut(s)	33, 126, 423, 462
HphI	GGTGA	5 cut(s)	80, 250, 385, 412, 429
Hpy188I	TCNGA	5 cut(s)	112, 252, 523, 609, 844
Hpy188III	TCNNGA	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	6 cut(s)	101, 223, 265, 305, 839, 849
HpyCH4III	ACNGT	4 cut(s)	382, 655, 663, 725
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	5 cut(s)	4, 542, 554, 646, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 179
HpyF3I	CTNAG	2 cut(s)	249, 823
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	646
HspAI	GCGC	5 cut(s)	30, 50, 568, 570, 820
KasI	GGCGCC	1 cut(s)	49
KroI	GCCGGC	1 cut(s)	32
KroNI	GCCGGC	1 cut(s)	34
KspI	CCGCGG	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	200
LmnI	GCTCC	3 cut(s)	190, 297, 565
Lsp1109I	GCAGC	3 cut(s)	169, 379, 616
LweI	GCATC	2 cut(s)	609, 770
MaeI	CTAG	2 cut(s)	80, 809
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	4 cut(s)	64, 545, 719, 826
MalI	GATC	1 cut(s)	202
MboI	GATC	1 cut(s)	200
MboII	GAAGA	9 cut(s)	89, 132, 135, 138, 141, 150, 225, 426, 546
MhlI	GDGCHC	3 cut(s)	126, 323, 380
MluCI	AATT	1 cut(s)	243
Mly113I	GGCGCC	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	64
MmeI	TCCRAC	1 cut(s)	135
MroNI	GCCGGC	1 cut(s)	32
MroXI	GAANNNNTTC	1 cut(s)	849
MseI	TTAA	1 cut(s)	590
MslI	CAYNNNNRTG	2 cut(s)	383, 488
MspA1I	CMGCKG	3 cut(s)	23, 62, 370
MspI	CCGG	4 cut(s)	33, 126, 423, 462
MspR9I	CCNGG	2 cut(s)	126, 717
Mva1269I	GAATGC	1 cut(s)	849
MvaI	CCWGG	1 cut(s)	717
MvnI	CGCG	4 cut(s)	23, 30, 568, 570
MwoI	GCNNNNNNNGC	2 cut(s)	29, 179
NaeI	GCCGGC	1 cut(s)	34
NarI	GGCGCC	1 cut(s)	50
NciI	CCSGG	1 cut(s)	126
NdeII	GATC	1 cut(s)	200
NgoMIV	GCCGGC	1 cut(s)	32
NlaIII	CATG	1 cut(s)	646
NlaIV	GGNNCC	3 cut(s)	51, 77, 561
NmeAIII	GCCGAG	1 cut(s)	52
NmuCI	GTSAC	2 cut(s)	64, 545
NspI	RCATGY	1 cut(s)	646
NspV	TTCGAA	1 cut(s)	532
OliI	CACNNNNGTG	1 cut(s)	383
PaeI	GCATGC	1 cut(s)	646
PauI	GCGCGC	1 cut(s)	568
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PctI	GAATGC	1 cut(s)	849
PdiI	GCCGGC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	849
PfeI	GAWTC	3 cut(s)	397, 694, 864
PkrI	GCNGC	6 cut(s)	25, 49, 184, 369, 391, 631
PleI	GAGTC	1 cut(s)	64
PluTI	GGCGCC	1 cut(s)	53
PmaCI	CACGTG	1 cut(s)	121
PmlI	CACGTG	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	64
Ppu21I	YACGTR	1 cut(s)	121
PsiI	TTATAA	1 cut(s)	581
Psp6I	CCWGG	1 cut(s)	715
PspCI	CACGTG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	715
PspN4I	GGNNCC	3 cut(s)	51, 77, 561
PspPI	GGNCC	1 cut(s)	75
PteI	GCGCGC	1 cut(s)	568
PvuII	CAGCTG	2 cut(s)	62, 370
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
RseI	CAYNNNNRTG	2 cut(s)	383, 488
SacII	CCGCGG	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	590
SatI	GCNGC	6 cut(s)	24, 48, 183, 368, 390, 630
Sau3AI	GATC	1 cut(s)	200
Sau96I	GGNCC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	2 cut(s)	126, 717
SduI	GDGCHC	3 cut(s)	126, 323, 380
SfaNI	GCATC	2 cut(s)	609, 770
SfoI	GGCGCC	1 cut(s)	51
Sfr303I	CCGCGG	1 cut(s)	24
SfuI	TTCGAA	1 cut(s)	532
SgrBI	CCGCGG	1 cut(s)	24
SmiMI	CAYNNNNRTG	2 cut(s)	383, 488
SphI	GCATGC	1 cut(s)	646
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	9 cut(s)	21, 23, 47, 115, 340, 389, 440, 476, 566
SspDI	GGCGCC	1 cut(s)	49
SspMI	CTAG	2 cut(s)	80, 809
StyD4I	CCNGG	2 cut(s)	124, 715
StyI	CCWWGG	2 cut(s)	637, 738
TaaI	ACNGT	4 cut(s)	382, 655, 663, 725
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	1 cut(s)	532
TaqII	GACCGA	1 cut(s)	90
TasI	AATT	1 cut(s)	243
TauI	GCSGC	3 cut(s)	26, 50, 392
TfiI	GAWTC	3 cut(s)	397, 694, 864
Tru1I	TTAA	1 cut(s)	590
Tru9I	TTAA	1 cut(s)	590
TscAI	CASTG	2 cut(s)	399, 463
TseFI	GTSAC	2 cut(s)	64, 545
TseI	GCWGC	3 cut(s)	182, 367, 629
Tsp45I	GTSAC	2 cut(s)	64, 545
TspDTI	ATGAA	1 cut(s)	472
TspGWI	ACGGA	3 cut(s)	153, 478, 687
TspRI	CASTG	2 cut(s)	399, 463
XagI	CCTNNNNNAGG	1 cut(s)	843
XceI	RCATGY	1 cut(s)	646
XmnI	GAANNNNTTC	1 cut(s)	849
XspI	CTAG	2 cut(s)	80, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.