Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011333

Physical Location & Seq

Genomic Coordinates Reverse (-)

6920369 .. 6922161

Gene Structure 1793 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G15890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGATAAAATCAGTGACTCTTCGTTCGTTTCATCTCCCAATTGAGTTTAACGACACCAAATTCGTCTCACGGCCTTGTTTCCTGGCGAGATCCTTCCCGGTGGTTCGTTGTTCAAGCACCAGAGACGTACCTAAGCTTGAACTCTTCAGCCGCGGAAAATTCGACCGGATTCTTCAAGATCCGCCACTTATTGAAAAAGCCGAATCCGAACTCTCAGATTACTGTTCGACGCTTGAAGGTGATGACTCTTACAGTTGCTGGAGAGCTTACTTTGAACTCAAAGATCTCGAAAGAGAGAAGCCAAAGGTTGAAGTTGAGAATTTGATTTTGCAAACAGGTGGTTTGAAATCGTTAATCGGGTGTTTACATGGAGTTGCTTCAATGGAGAAAGATAACAAAACCAAGAATGGTTTACATGTAGGAGAAGAATCAGATAGAGAGAAAGGAATGAATTTGCACATTCATATTCCTGATGGTTTACCAAAATCTGAACAAGAGTTGGAGGAAGAAGAGAAATCGAAAATGCCGGATTCAGCTTTCACTAGATTGCTTAGAAGTAAAGGAACTATCCCTGCTTGGTTCTCTCACGCTCCTGACCACGAAACCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006935 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0010154 GO:0010183 GO:0022414 GO:0032501 GO:0032502 GO:0036033 GO:0040011 GO:0042221 GO:0042330 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0044877 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050832 GO:0050896 GO:0050918 GO:0051704 GO:0051707 GO:0061458 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

23.15

Weight (kDa)

5.58

Isoelectric Point (pI)

58.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15890 AT2G15890
fragaria_vesca	FvH4_2g07110
malus_domestica	MD05G1073200.v1.1 MD10G1087700.v1.1
prunus_persica	Prupe.8G113800_v2.0.a1 Prupe.8G113800_v2.0.a1 Prupe.8G113800_v2.0.a1
pyrus_communis	pycom10g07000
rosa_chinensis	RchiOBHm_Chr6g0259611
rosa_laevigata	RLG00000014518
rosa_multiflora	Rmu_sc0000536.1_g000031 Rmu_ssc0000050.1_g000007
rosa_roxburghii	Rroxscaffold_7G00206900
rosa_rugosa	Rorug05G0590000
rosa_samantha	Rh6AG106100 Rh6BG100500 Rh6CG095000 Rh6DG089100
rosa_wichuraiana	Rw6G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	153
AciI	CCGC	3 cut(s)	151, 153, 182
AclWI	GGATC	2 cut(s)	84, 173
AcsI	RAATTY	4 cut(s)	59, 158, 319, 451
AcuI	CTGAAG	1 cut(s)	130
AfaI	GTAC	1 cut(s)	129
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	9 cut(s)	114, 140, 176, 194, 236, 275, 311, 346, 381
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	3 cut(s)	136, 266, 536
AluI	AGCT	3 cut(s)	136, 266, 536
Alw26I	GTCTC	2 cut(s)	70, 117
AlwI	GGATC	2 cut(s)	84, 173
AlwNI	CAGNNNCTG	1 cut(s)	258
AoxI	GGCC	1 cut(s)	71
ApoI	RAATTY	4 cut(s)	59, 158, 319, 451
ArsI	GACNNNNNNTTYG	4 cut(s)	7, 39, 44, 76
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	251
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	83
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	2 cut(s)	70, 117
BfaI	CTAG	1 cut(s)	543
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	152
Bme1390I	CCNGG	2 cut(s)	83, 98
BmrFI	CCNGG	2 cut(s)	83, 98
BpmI	CTGGAG	1 cut(s)	280
Bpu10I	CCTNAGC	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	151
BsaWI	WCCGGW	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	228
Bsh1236I	CGCG	1 cut(s)	153
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	1 cut(s)	73
BsiEI	CGRYCG	1 cut(s)	166
BsiSI	CCGG	3 cut(s)	98, 166, 527
BsmAI	GTCTC	2 cut(s)	70, 117
BsmBI	CGTCTC	2 cut(s)	70, 117
BsnI	GGCC	1 cut(s)	73
Bsp143I	GATC	3 cut(s)	89, 178, 283
BspACI	CCGC	3 cut(s)	151, 153, 182
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	1 cut(s)	227
BspFNI	CGCG	1 cut(s)	153
BspPI	GGATC	2 cut(s)	84, 173
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	3 cut(s)	89, 178, 283
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	2 cut(s)	224, 254
Bst6I	CTCTTC	3 cut(s)	24, 149, 504
BstDEI	CTNAG	3 cut(s)	132, 214, 551
BstDSI	CCRYGG	1 cut(s)	151
BstFNI	CGCG	1 cut(s)	153
BstKTI	GATC	3 cut(s)	92, 181, 286
BstMAI	GTCTC	2 cut(s)	70, 117
BstMBI	GATC	3 cut(s)	89, 178, 283
BstMCI	CGRYCG	1 cut(s)	166
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	2 cut(s)	81, 96
BstUI	CGCG	1 cut(s)	153
BstX2I	RGATCY	3 cut(s)	89, 178, 283
BstYI	RGATCY	3 cut(s)	89, 178, 283
BsuRI	GGCC	1 cut(s)	73
BtgI	CCRYGG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	18
CaiI	CAGNNNCTG	1 cut(s)	258
Cfr42I	CCGCGG	1 cut(s)	154
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	2 cut(s)	368, 416
CviJI	RGCY	7 cut(s)	73, 136, 150, 200, 266, 301, 536
CviKI_1	RGCY	7 cut(s)	73, 136, 150, 200, 266, 301, 536
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	3 cut(s)	132, 214, 551
DpnI	GATC	3 cut(s)	91, 180, 285
DpnII	GATC	3 cut(s)	89, 178, 283
Eam1104I	CTCTTC	3 cut(s)	24, 149, 504
EarI	CTCTTC	3 cut(s)	24, 149, 504
EciI	GGCGGA	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	81
Esp3I	CGTCTC	2 cut(s)	70, 117
FaeI	CATG	2 cut(s)	371, 419
FaiI	YATR	3 cut(s)	369, 417, 465
FatI	CATG	2 cut(s)	367, 415
Fnu4HI	GCNGC	1 cut(s)	151
Fsp4HI	GCNGC	1 cut(s)	151
FspBI	CTAG	1 cut(s)	543
GluI	GCNGC	1 cut(s)	151
GsuI	CTGGAG	1 cut(s)	280
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	3 cut(s)	98, 166, 527
HgaI	GACGC	1 cut(s)	238
Hin1II	CATG	2 cut(s)	371, 419
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	6 cut(s)	16, 169, 203, 245, 428, 530
HpaII	CCGG	3 cut(s)	98, 166, 527
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	3 cut(s)	365, 413, 479
Hpy188I	TCNGA	4 cut(s)	208, 217, 433, 490
Hpy188III	TCNNGA	4 cut(s)	176, 287, 470, 593
Hpy8I	GTNNAC	3 cut(s)	365, 413, 479
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	2 cut(s)	103, 230
HpyCH4III	ACNGT	2 cut(s)	224, 254
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	331, 457
HpyF3I	CTNAG	3 cut(s)	132, 214, 551
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	371, 419
KspI	CCGCGG	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	89, 178, 283
LmnI	GCTCC	1 cut(s)	595
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	3 cut(s)	91, 180, 285
MboI	GATC	3 cut(s)	89, 178, 283
MboII	GAAGA	6 cut(s)	11, 136, 164, 437, 518, 521
MfeI	CAATTG	1 cut(s)	39
MflI	RGATCY	3 cut(s)	89, 178, 283
MluCI	AATT	5 cut(s)	39, 59, 158, 319, 451
MlyI	GAGTC	2 cut(s)	10, 239
MmeI	TCCRAC	1 cut(s)	480
MnlI	CCTC	1 cut(s)	496
MseI	TTAA	2 cut(s)	48, 353
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	3 cut(s)	98, 166, 527
MspR9I	CCNGG	2 cut(s)	83, 98
MunI	CAATTG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	153
NciI	CCSGG	1 cut(s)	98
NdeII	GATC	3 cut(s)	89, 178, 283
NlaIII	CATG	2 cut(s)	371, 419
NmuCI	GTSAC	1 cut(s)	13
NspI	RCATGY	1 cut(s)	419
PciI	ACATGT	1 cut(s)	415
PfeI	GAWTC	4 cut(s)	169, 203, 428, 530
PkrI	GCNGC	1 cut(s)	152
PleI	GAGTC	2 cut(s)	10, 239
PpsI	GAGTC	2 cut(s)	10, 239
PscI	ACATGT	1 cut(s)	415
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PstNI	CAGNNNCTG	1 cut(s)	258
PsuI	RGATCY	3 cut(s)	89, 178, 283
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SacII	CCGCGG	1 cut(s)	154
SaqAI	TTAA	2 cut(s)	48, 353
SatI	GCNGC	1 cut(s)	151
Sau3AI	GATC	3 cut(s)	89, 178, 283
SchI	GAGTC	2 cut(s)	10, 239
ScrFI	CCNGG	2 cut(s)	83, 98
SetI	ASST	8 cut(s)	129, 133, 138, 241, 268, 309, 340, 538
Sfr303I	CCGCGG	1 cut(s)	154
SgrBI	CCGCGG	1 cut(s)	154
Sse9I	AATT	5 cut(s)	39, 59, 158, 319, 451
SsiI	CCGC	3 cut(s)	151, 153, 182
SspMI	CTAG	1 cut(s)	543
StyD4I	CCNGG	2 cut(s)	81, 96
TaaI	ACNGT	2 cut(s)	224, 254
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	4 cut(s)	162, 227, 288, 518
TasI	AATT	5 cut(s)	39, 59, 158, 319, 451
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	4 cut(s)	169, 203, 428, 530
Tru1I	TTAA	2 cut(s)	48, 353
Tru9I	TTAA	2 cut(s)	48, 353
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	3 cut(s)	20, 452, 464
TspRI	CASTG	1 cut(s)	18
XapI	RAATTY	4 cut(s)	59, 158, 319, 451
XceI	RCATGY	1 cut(s)	419
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.