Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011333

Physical Location & Seq

Genomic Coordinates Forward (+)

56707080 .. 56708276

Gene Structure 1197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00206900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGATGAAGTCAGTCTTAATTCGTTCTTGTACATCTTCTTCTCCTCTTCTCTTCAAATCTCACGGAGAAGCTCAACCTCAAAAAATGGCCTATTCCTCTGTTCGTTGCTCTTCCAGAAACCCAGCTTACATTCCCAAGCTCGAGCCCTTCAGCCGCTCCAAGTTCGATCGCGCCATTAAAGGACCTACCCTGATCGAAAAATGCGAGAACGAGCTATCTGATTACTGTTCGACGCTGGAAGGTGATGAGTCTTATGGTTGTTGGAGAGCCTACTTTGAGCTCAAAGATCTTGAGAAAGAGACGCCGAAAGAAGATGTGGAGAAGCTTATTTTGCAAGCAGGGGGAATAAAGTCATTAGTGGGATGTTTGCATGGAATTGCTGCAATTCAAAAGGGGAAGACGTATGGATTCAATTCAGCAAAGCCAGTGGAAGAACCAAAAGCAGCGGAGAGGCTATGCCCTATACCAGATGGGTTGCCGAAGTCAGCTGCTGAGCTAGAGGAAGAAGAGAAATCGAAAATGCCCGATTCCGCCTTCACCAGGCTTCTTCGGATCAAAGGGACTCATCCTGCTTGGTATTCCCTGGCCCCTGACCATGAAACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006935 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0010154 GO:0010183 GO:0022414 GO:0032501 GO:0032502 GO:0036033 GO:0040011 GO:0042221 GO:0042330 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0044877 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050832 GO:0050896 GO:0050918 GO:0051704 GO:0051707 GO:0061458 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

22.48

Weight (kDa)

6.46

Isoelectric Point (pI)

49.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15890 AT2G15890
fragaria_vesca	FvH4_2g07110
malus_domestica	MD05G1073200.v1.1 MD10G1087700.v1.1
prunus_persica	Prupe.8G113800_v2.0.a1 Prupe.8G113800_v2.0.a1 Prupe.8G113800_v2.0.a1
pyrus_communis	pycom10g07000
rosa_chinensis	RchiOBHm_Chr6g0259611
rosa_laevigata	RLG00000014518
rosa_multiflora	Rmu_sc0000536.1_g000031 Rmu_ssc0000050.1_g000007
rosa_roxburghii	Rroxscaffold_7G00206900
rosa_rugosa	Rorug05G0590000
rosa_samantha	Rh6AG106100 Rh6BG100500 Rh6CG095000 Rh6DG089100
rosa_wichuraiana	Rw6G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	156
AccII	CGCG	1 cut(s)	171
AciI	CCGC	3 cut(s)	154, 446, 531
AclWI	GGATC	1 cut(s)	560
AcuI	CTGAAG	1 cut(s)	133
AcyI	GRCGYC	1 cut(s)	302
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	540
AgsI	TTSAA	3 cut(s)	55, 389, 412
AjnI	CCWGG	2 cut(s)	539, 582
AluBI	AGCT	8 cut(s)	71, 125, 139, 214, 280, 325, 488, 496
AluI	AGCT	8 cut(s)	71, 125, 139, 214, 280, 325, 488, 496
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	560
AlwNI	CAGNNNCTG	1 cut(s)	491
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	2 cut(s)	87, 585
ApeKI	GCWGC	3 cut(s)	380, 443, 488
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	2 cut(s)	182, 586
AsuHPI	GGTGA	2 cut(s)	254, 529
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	182
BanII	GRGCYC	2 cut(s)	147, 282
BarI	GAAGNNNNNNTAC	2 cut(s)	22, 54
BbsI	GAAGAC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	3 cut(s)	367, 455, 475
BccI	CCATC	1 cut(s)	464
BciT130I	CCWGG	2 cut(s)	541, 584
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	497
BglII	AGATCT	1 cut(s)	286
BisI	GCNGC	4 cut(s)	154, 381, 444, 489
BlpI	GCTNAGC	1 cut(s)	492
BlsI	GCNGC	4 cut(s)	155, 382, 445, 490
Bme1390I	CCNGG	2 cut(s)	541, 584
Bme18I	GGWCC	1 cut(s)	182
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	2 cut(s)	182, 586
BmiI	GGNNCC	1 cut(s)	588
BmrFI	CCNGG	2 cut(s)	541, 584
BpiI	GAAGAC	1 cut(s)	404
Bpu1102I	GCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	311
BsaHI	GRCGYC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	1 cut(s)	540
Bse1I	ACTGG	1 cut(s)	425
BseBI	CCWGG	2 cut(s)	541, 584
BseDI	CCNNGG	1 cut(s)	582
BseGI	GGATG	2 cut(s)	368, 565
BseLI	CCNNNNNNNGG	1 cut(s)	540
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	1 cut(s)	425
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	3 cut(s)	367, 455, 475
BseYI	CCCAGC	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	171
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	89, 587
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	1 cut(s)	540
BsmAI	GTCTC	1 cut(s)	293
BsmBI	CGTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	574
BsnI	GGCC	2 cut(s)	89, 587
BsoBI	CYCGRG	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	147, 282
Bsp1407I	TGTACA	1 cut(s)	29
Bsp143I	GATC	4 cut(s)	166, 192, 286, 552
Bsp1720I	GCTNAGC	1 cut(s)	492
BspACI	CCGC	3 cut(s)	154, 446, 531
BspANI	GGCC	2 cut(s)	89, 587
BspCNI	CTCAG	1 cut(s)	484
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	588
BspPI	GGATC	1 cut(s)	560
BspQI	GCTCTTC	1 cut(s)	115
BsrBI	CCGCTC	1 cut(s)	156
BsrGI	TGTACA	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	582
BssMI	GATC	4 cut(s)	166, 192, 286, 552
BssNI	GRCGYC	1 cut(s)	302
Bst2UI	CCWGG	2 cut(s)	541, 584
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	4 cut(s)	51, 56, 115, 501
BstACI	GRCGYC	1 cut(s)	302
BstAUI	TGTACA	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	1 cut(s)	492
BstENI	CCTNNNNNAGG	1 cut(s)	538
BstF5I	GGATG	2 cut(s)	368, 565
BstFNI	CGCG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	4 cut(s)	169, 195, 289, 555
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	4 cut(s)	166, 192, 286, 552
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	331
BstNI	CCWGG	2 cut(s)	541, 584
BstSCI	CCNGG	2 cut(s)	539, 582
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	3 cut(s)	367, 455, 475
BstV2I	GAAGAC	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	89, 587
BtsCI	GGATG	2 cut(s)	368, 565
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	1 cut(s)	336
CaiI	CAGNNNCTG	1 cut(s)	491
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	182, 586
CseI	GACGC	2 cut(s)	241, 310
Csp6I	GTAC	1 cut(s)	30
CspCI	CAANNNNNGTGG	2 cut(s)	408, 443
CviAII	CATG	2 cut(s)	371, 596
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	4 cut(s)	168, 194, 288, 554
DpnII	GATC	4 cut(s)	166, 192, 286, 552
Eam1104I	CTCTTC	4 cut(s)	51, 56, 115, 501
EarI	CTCTTC	4 cut(s)	51, 56, 115, 501
EciI	GGCGGA	1 cut(s)	520
Ecl136II	GAGCTC	1 cut(s)	280
Eco24I	GRGCYC	2 cut(s)	147, 282
Eco47I	GGWCC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	280
EcoNI	CCTNNNNNAGG	1 cut(s)	538
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	539, 582
EcoT38I	GRGCYC	2 cut(s)	147, 282
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	2 cut(s)	374, 599
FaiI	YATR	6 cut(s)	255, 372, 405, 457, 464, 597
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	2 cut(s)	370, 595
Fnu4HI	GCNGC	4 cut(s)	154, 381, 444, 489
FokI	GGATG	2 cut(s)	375, 552
FriOI	GRGCYC	2 cut(s)	147, 282
Fsp4HI	GCNGC	4 cut(s)	154, 381, 444, 489
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	4 cut(s)	154, 381, 444, 489
GsaI	CCCAGC	1 cut(s)	125
HaeIII	GGCC	2 cut(s)	89, 587
HgaI	GACGC	2 cut(s)	241, 310
HhaI	GCGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	302
Hin1II	CATG	2 cut(s)	374, 599
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	4 cut(s)	248, 408, 527, 562
HphI	GGTGA	2 cut(s)	254, 529
Hpy188I	TCNGA	2 cut(s)	220, 552
Hpy188III	TCNNGA	2 cut(s)	114, 290
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	3 cut(s)	157, 233, 544
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	3 cut(s)	334, 370, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	331
HpyF3I	CTNAG	1 cut(s)	492
HpySE526I	ACGT	1 cut(s)	401
Hsp92I	GRCGYC	1 cut(s)	302
Hsp92II	CATG	2 cut(s)	374, 599
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	4 cut(s)	166, 192, 286, 552
LguI	GCTCTTC	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	3 cut(s)	367, 455, 475
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	1 cut(s)	401
MalI	GATC	4 cut(s)	168, 194, 288, 554
MbiI	CCGCTC	1 cut(s)	156
MboI	GATC	4 cut(s)	166, 192, 286, 552
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	2 cut(s)	147, 282
MluCI	AATT	4 cut(s)	18, 375, 384, 412
MlyI	GAGTC	2 cut(s)	257, 556
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	5 cut(s)	54, 87, 106, 444, 493
MseI	TTAA	2 cut(s)	17, 177
MspA1I	CMGCKG	2 cut(s)	446, 488
MspR9I	CCNGG	2 cut(s)	541, 584
MvaI	CCWGG	2 cut(s)	541, 584
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	331
NdeII	GATC	4 cut(s)	166, 192, 286, 552
NlaIII	CATG	2 cut(s)	374, 599
NlaIV	GGNNCC	1 cut(s)	588
PaeR7I	CTCGAG	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	408, 527
PkrI	GCNGC	4 cut(s)	155, 382, 445, 490
Ple19I	CGATCG	1 cut(s)	169
PleI	GAGTC	2 cut(s)	256, 556
PpsI	GAGTC	2 cut(s)	256, 556
PpuMI	RGGWCCY	1 cut(s)	182
Psp124BI	GAGCTC	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	182
Psp6I	CCWGG	2 cut(s)	539, 582
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	2 cut(s)	539, 582
PspN4I	GGNNCC	1 cut(s)	588
PspPI	GGNCC	2 cut(s)	182, 586
PspPPI	RGGWCCY	1 cut(s)	182
PspXI	VCTCGAGB	1 cut(s)	140
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	286
PvuI	CGATCG	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
SacI	GAGCTC	1 cut(s)	282
SapI	GCTCTTC	1 cut(s)	115
SaqAI	TTAA	2 cut(s)	17, 177
SatI	GCNGC	4 cut(s)	154, 381, 444, 489
Sau3AI	GATC	4 cut(s)	166, 192, 286, 552
Sau96I	GGNCC	2 cut(s)	182, 586
SchI	GAGTC	2 cut(s)	257, 556
ScrFI	CCNGG	2 cut(s)	541, 584
SduI	GDGCHC	2 cut(s)	147, 282
Sfr274I	CTCGAG	1 cut(s)	140
SinI	GGWCC	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	140
SmlI	CTYRAG	2 cut(s)	140, 290
SmoI	CTYRAG	2 cut(s)	140, 290
Sse9I	AATT	4 cut(s)	18, 375, 384, 412
SsiI	CCGC	3 cut(s)	154, 446, 531
SspMI	CTAG	1 cut(s)	497
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	539, 582
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	1 cut(s)	404
TaqI	TCGA	5 cut(s)	141, 165, 195, 230, 515
TasI	AATT	4 cut(s)	18, 375, 384, 412
TatI	WGTACW	1 cut(s)	29
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	2 cut(s)	408, 527
Tru1I	TTAA	2 cut(s)	17, 177
Tru9I	TTAA	2 cut(s)	17, 177
TscAI	CASTG	1 cut(s)	432
TseI	GCWGC	3 cut(s)	380, 443, 488
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	432
VpaK11BI	GGWCC	1 cut(s)	182
XagI	CCTNNNNNAGG	1 cut(s)	538
XhoI	CTCGAG	1 cut(s)	140
XspI	CTAG	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.