Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011333

Physical Location & Seq

Genomic Coordinates Forward (+)

54276612 .. 54277836

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014518

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAAGCATTCATCTTCAGATCAGATGACACACCGCCGCGTTTTACTGCTACAGAGTCGCTGGAACGACGCCGCTGTTTTTACTAAATTCCGTGACCCCCACCTGTGGTCCCACTTCCACACTTTCCCACATAACTCACCCTTAACGGTGACAGCAGCGCCTCAAACGACTTCTACTTCGTCCACGTTACTTCCTTTCCATCACAGCCCTGTGAAGACCAGAAGCAAAAACCAAATCTTGAAGAGAAAGCAAGGTTCTTTGAGCACGATGATGAAGTCAGTCTTGCTTCGTTCTTGTCCATCTTCTTCTCCTCTTCTCTTCAAATCTCACGGAGAAGCTCAGCCTCAAAAAATGGCGTATTCCTCTGTTCGTTGCTCTTCCAGAAACCCAGCTTACATTCCCAAGCTCGAGCCCTTCAGCCGCTCCAAGTTCGATCGCGCCATTAAAGGCCCTACCCTGATCGAGAAGTGCGAGAACGAGCTATCTGATTACTGTTCGACGCTGGAAGGAGATGAGTCTTATGGTTGCTGGAGAGCCTACTTTGAGCTCAAAGATCTTGAGAAAGAGACGCCGAAAGAAGATGTGGAGAAGTTGATTTTGCAAGCAGGGGGAATAAAGTCATTAGTGGGATGTTTGCATGGAATTGCTGCAATGCAAAAGGGGAAGACGTTTGGATTCAATTCAGCAAAGCCAGTGGAAGAAACAAAAGCGGCGGAGAGGCTATGTCCTATACCAGATGGGTTGCCAAAGTCAGCTGCTGAGCTAGAGGAAGAAGAGAAATCGAAAATGCCGGATTCAGCATTCACCAGGCTTCTTAGGGTCAAAGGGACTCATCCTGCTTGGTATTCCCTGGCCCCTGACCATGAAACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006935 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0010154 GO:0010183 GO:0022414 GO:0032501 GO:0032502 GO:0036033 GO:0040011 GO:0042221 GO:0042330 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0044877 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050832 GO:0050896 GO:0050918 GO:0051704 GO:0051707 GO:0061458 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

292

Amino Acids

32.66

Weight (kDa)

9.06

Isoelectric Point (pI)

59.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15890 AT2G15890
fragaria_vesca	FvH4_2g07110
malus_domestica	MD05G1073200.v1.1 MD10G1087700.v1.1
prunus_persica	Prupe.8G113800_v2.0.a1 Prupe.8G113800_v2.0.a1 Prupe.8G113800_v2.0.a1
pyrus_communis	pycom10g07000
rosa_chinensis	RchiOBHm_Chr6g0259611
rosa_laevigata	RLG00000014518
rosa_multiflora	Rmu_sc0000536.1_g000031 Rmu_ssc0000050.1_g000007
rosa_roxburghii	Rroxscaffold_7G00206900
rosa_rugosa	Rorug05G0590000
rosa_samantha	Rh6AG106100 Rh6BG100500 Rh6CG095000 Rh6DG089100
rosa_wichuraiana	Rw6G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	423
AccII	CGCG	2 cut(s)	39, 438
AciI	CCGC	6 cut(s)	34, 37, 72, 421, 710, 713
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	400
AcyI	GRCGYC	2 cut(s)	69, 569
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	241, 322, 679
AjnI	CCWGG	2 cut(s)	806, 849
AluBI	AGCT	7 cut(s)	338, 392, 406, 481, 547, 755, 763
AluI	AGCT	7 cut(s)	338, 392, 406, 481, 547, 755, 763
Alw21I	GWGCWC	2 cut(s)	266, 549
Alw26I	GTCTC	1 cut(s)	560
AlwNI	CAGNNNCTG	1 cut(s)	758
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	2 cut(s)	448, 852
ApeKI	GCWGC	3 cut(s)	155, 647, 755
ApoI	RAATTY	1 cut(s)	86
ArsI	GACNNNNNNTTYG	2 cut(s)	160, 192
AspLEI	GCGC	2 cut(s)	160, 440
AspS9I	GGNCC	3 cut(s)	108, 449, 853
AsuHPI	GGTGA	3 cut(s)	129, 160, 796
AvaI	CYCGRG	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	108
BanII	GRGCYC	2 cut(s)	414, 549
BbsI	GAAGAC	2 cut(s)	221, 671
Bbv12I	GWGCWC	2 cut(s)	266, 549
BbvI	GCAGC	3 cut(s)	167, 634, 742
BccI	CCATC	3 cut(s)	207, 307, 731
BciT130I	CCWGG	2 cut(s)	808, 851
BcoDI	GTCTC	1 cut(s)	560
BfaI	CTAG	1 cut(s)	764
BfmI	CTRYAG	1 cut(s)	50
BfoI	RGCGCY	1 cut(s)	161
BglII	AGATCT	1 cut(s)	553
BisI	GCNGC	7 cut(s)	37, 72, 156, 421, 648, 711, 756
BlpI	GCTNAGC	2 cut(s)	339, 759
BlsI	GCNGC	7 cut(s)	38, 73, 157, 422, 649, 712, 757
Bme1390I	CCNGG	2 cut(s)	808, 851
Bme18I	GGWCC	1 cut(s)	108
BmeT110I	CYCGRG	1 cut(s)	407
BmgT120I	GGNCC	3 cut(s)	108, 449, 853
BmiI	GGNNCC	2 cut(s)	110, 855
BmrFI	CCNGG	2 cut(s)	808, 851
BpiI	GAAGAC	2 cut(s)	221, 671
BpmI	CTGGAG	1 cut(s)	550
Bpu1102I	GCTNAGC	2 cut(s)	339, 759
BpuEI	CTTGAG	1 cut(s)	578
BsaHI	GRCGYC	2 cut(s)	69, 569
BsaJI	CCNNGG	1 cut(s)	849
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	692
Bse3DI	GCAATG	1 cut(s)	657
BseBI	CCWGG	2 cut(s)	808, 851
BseDI	CCNNGG	1 cut(s)	849
BseGI	GGATG	2 cut(s)	635, 832
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	2 cut(s)	353, 750
BseNI	ACTGG	1 cut(s)	692
BseRI	GAGGAG	1 cut(s)	300
BseXI	GCAGC	3 cut(s)	167, 634, 742
BseYI	CCCAGC	1 cut(s)	388
Bsh1236I	CGCG	2 cut(s)	39, 438
Bsh1285I	CGRYCG	1 cut(s)	436
BshFI	GGCC	2 cut(s)	450, 854
BsiEI	CGRYCG	1 cut(s)	436
BsiHKAI	GWGCWC	2 cut(s)	266, 549
BsiHKCI	CYCGRG	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	791
BslFI	GGGAC	2 cut(s)	94, 841
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	560
BsmBI	CGTCTC	1 cut(s)	560
BsmFI	GGGAC	2 cut(s)	94, 841
BsmI	GAATGC	2 cut(s)	7, 800
BsnI	GGCC	2 cut(s)	450, 854
BsoBI	CYCGRG	1 cut(s)	407
Bsp1286I	GDGCHC	3 cut(s)	266, 414, 549
Bsp143I	GATC	4 cut(s)	19, 433, 459, 553
Bsp1720I	GCTNAGC	2 cut(s)	339, 759
BspACI	CCGC	6 cut(s)	34, 37, 72, 421, 710, 713
BspANI	GGCC	2 cut(s)	450, 854
BspCNI	CTCAG	2 cut(s)	352, 751
BspFNI	CGCG	2 cut(s)	39, 438
BspLI	GGNNCC	2 cut(s)	110, 855
BspQI	GCTCTTC	1 cut(s)	382
BsrBI	CCGCTC	1 cut(s)	423
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	1 cut(s)	692
BssECI	CCNNGG	1 cut(s)	849
BssMI	GATC	4 cut(s)	19, 433, 459, 553
BssNI	GRCGYC	2 cut(s)	69, 569
Bst2UI	CCWGG	2 cut(s)	808, 851
Bst4CI	ACNGT	2 cut(s)	148, 494
Bst6I	CTCTTC	5 cut(s)	236, 318, 323, 382, 768
BstACI	GRCGYC	2 cut(s)	69, 569
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	3 cut(s)	339, 759, 815
BstF5I	GGATG	2 cut(s)	635, 832
BstFNI	CGCG	2 cut(s)	39, 438
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	2 cut(s)	160, 440
BstKTI	GATC	4 cut(s)	22, 436, 462, 556
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	4 cut(s)	19, 433, 459, 553
BstMCI	CGRYCG	1 cut(s)	436
BstNI	CCWGG	2 cut(s)	808, 851
BstSCI	CCNGG	2 cut(s)	806, 849
BstSFI	CTRYAG	1 cut(s)	50
BstUI	CGCG	2 cut(s)	39, 438
BstV1I	GCAGC	3 cut(s)	167, 634, 742
BstV2I	GAAGAC	2 cut(s)	221, 671
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BsuRI	GGCC	2 cut(s)	450, 854
BtsCI	GGATG	2 cut(s)	635, 832
BtsIMutI	CAGTG	1 cut(s)	699
Cac8I	GCNNGC	1 cut(s)	603
CaiI	CAGNNNCTG	1 cut(s)	758
CfoI	GCGC	2 cut(s)	160, 440
Cfr13I	GGNCC	3 cut(s)	108, 449, 853
CseI	GACGC	3 cut(s)	77, 508, 577
CspCI	CAANNNNNGTGG	2 cut(s)	675, 710
CviAII	CATG	2 cut(s)	638, 863
DdeI	CTNAG	3 cut(s)	339, 759, 815
DpnI	GATC	4 cut(s)	21, 435, 461, 555
DpnII	GATC	4 cut(s)	19, 433, 459, 553
Eam1104I	CTCTTC	5 cut(s)	236, 318, 323, 382, 768
EarI	CTCTTC	5 cut(s)	236, 318, 323, 382, 768
EciI	GGCGGA	1 cut(s)	728
Ecl136II	GAGCTC	1 cut(s)	547
Eco24I	GRGCYC	2 cut(s)	414, 549
Eco47I	GGWCC	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	547
Eco57I	CTGAAG	1 cut(s)	400
Eco88I	CYCGRG	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	547
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRII	CCWGG	2 cut(s)	806, 849
EcoT38I	GRGCYC	2 cut(s)	414, 549
Esp3I	CGTCTC	1 cut(s)	560
FaeI	CATG	2 cut(s)	641, 866
FaiI	YATR	6 cut(s)	132, 522, 639, 724, 731, 864
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	2 cut(s)	94, 841
FatI	CATG	2 cut(s)	637, 862
Fnu4HI	GCNGC	7 cut(s)	37, 72, 156, 421, 648, 711, 756
FokI	GGATG	2 cut(s)	642, 819
FriOI	GRGCYC	2 cut(s)	414, 549
Fsp4HI	GCNGC	7 cut(s)	37, 72, 156, 421, 648, 711, 756
FspBI	CTAG	1 cut(s)	764
GlaI	GCGC	2 cut(s)	159, 439
GluI	GCNGC	7 cut(s)	37, 72, 156, 421, 648, 711, 756
GsaI	CCCAGC	1 cut(s)	392
GsuI	CTGGAG	1 cut(s)	550
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	2 cut(s)	450, 854
HapII	CCGG	1 cut(s)	791
HgaI	GACGC	3 cut(s)	77, 508, 577
HhaI	GCGC	2 cut(s)	160, 440
Hin1I	GRCGYC	2 cut(s)	69, 569
Hin1II	CATG	2 cut(s)	641, 866
Hin6I	GCGC	2 cut(s)	158, 438
HinP1I	GCGC	2 cut(s)	158, 438
HinfI	GANTC	5 cut(s)	55, 515, 675, 794, 829
HpaII	CCGG	1 cut(s)	791
HphI	GGTGA	3 cut(s)	129, 160, 796
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	3 cut(s)	19, 24, 487
Hpy188III	TCNNGA	4 cut(s)	238, 381, 463, 557
Hpy8I	GTNNAC	1 cut(s)	183
Hpy99I	CGWCG	2 cut(s)	71, 502
HpyAV	CCTTC	2 cut(s)	424, 500
HpyCH4III	ACNGT	2 cut(s)	148, 494
HpyCH4IV	ACGT	2 cut(s)	185, 668
HpyCH4V	TGCA	4 cut(s)	601, 637, 650, 655
HpyF3I	CTNAG	3 cut(s)	339, 759, 815
HpySE526I	ACGT	2 cut(s)	185, 668
Hsp92I	GRCGYC	2 cut(s)	69, 569
Hsp92II	CATG	2 cut(s)	641, 866
HspAI	GCGC	2 cut(s)	158, 438
Kzo9I	GATC	4 cut(s)	19, 433, 459, 553
LguI	GCTCTTC	1 cut(s)	382
LmnI	GCTCC	1 cut(s)	428
Lsp1109I	GCAGC	3 cut(s)	167, 634, 742
MaeI	CTAG	1 cut(s)	764
MaeII	ACGT	2 cut(s)	185, 668
MaeIII	GTNAC	3 cut(s)	92, 148, 186
MalI	GATC	4 cut(s)	21, 435, 461, 555
MbiI	CCGCTC	1 cut(s)	423
MboI	GATC	4 cut(s)	19, 433, 459, 553
MflI	RGATCY	1 cut(s)	553
MhlI	GDGCHC	3 cut(s)	266, 414, 549
MluCI	AATT	3 cut(s)	86, 642, 679
MlyI	GAGTC	3 cut(s)	64, 524, 823
MnlI	CCTC	6 cut(s)	171, 321, 354, 373, 711, 760
MseI	TTAA	2 cut(s)	143, 444
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	2 cut(s)	74, 755
MspI	CCGG	1 cut(s)	791
MspR9I	CCNGG	2 cut(s)	808, 851
Mva1269I	GAATGC	2 cut(s)	7, 800
MvaI	CCWGG	2 cut(s)	808, 851
MvnI	CGCG	2 cut(s)	39, 438
NdeII	GATC	4 cut(s)	19, 433, 459, 553
NlaIII	CATG	2 cut(s)	641, 866
NlaIV	GGNNCC	2 cut(s)	110, 855
NmuCI	GTSAC	2 cut(s)	92, 148
PaeR7I	CTCGAG	1 cut(s)	407
PciSI	GCTCTTC	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PctI	GAATGC	2 cut(s)	7, 800
PfeI	GAWTC	2 cut(s)	675, 794
PkrI	GCNGC	7 cut(s)	38, 73, 157, 422, 649, 712, 757
Ple19I	CGATCG	1 cut(s)	436
PleI	GAGTC	3 cut(s)	63, 523, 823
PpsI	GAGTC	3 cut(s)	63, 523, 823
Psp124BI	GAGCTC	1 cut(s)	549
Psp6I	CCWGG	2 cut(s)	806, 849
PspFI	CCCAGC	1 cut(s)	388
PspGI	CCWGG	2 cut(s)	806, 849
PspN4I	GGNNCC	2 cut(s)	110, 855
PspPI	GGNCC	3 cut(s)	108, 449, 853
PspXI	VCTCGAGB	1 cut(s)	407
PstNI	CAGNNNCTG	1 cut(s)	758
PsuI	RGATCY	1 cut(s)	553
PvuI	CGATCG	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	755
RseI	CAYNNNNRTG	1 cut(s)	269
SacI	GAGCTC	1 cut(s)	549
SapI	GCTCTTC	1 cut(s)	382
SaqAI	TTAA	2 cut(s)	143, 444
SatI	GCNGC	7 cut(s)	37, 72, 156, 421, 648, 711, 756
Sau3AI	GATC	4 cut(s)	19, 433, 459, 553
Sau96I	GGNCC	3 cut(s)	108, 449, 853
SchI	GAGTC	3 cut(s)	64, 524, 823
ScrFI	CCNGG	2 cut(s)	808, 851
SduI	GDGCHC	3 cut(s)	266, 414, 549
SfcI	CTRYAG	1 cut(s)	50
Sfr274I	CTCGAG	1 cut(s)	407
SinI	GGWCC	1 cut(s)	108
SlaI	CTCGAG	1 cut(s)	407
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	2 cut(s)	407, 557
SmoI	CTYRAG	2 cut(s)	407, 557
Sse9I	AATT	3 cut(s)	86, 642, 679
SsiI	CCGC	6 cut(s)	34, 37, 72, 421, 710, 713
SspMI	CTAG	1 cut(s)	764
SstI	GAGCTC	1 cut(s)	549
StyD4I	CCNGG	2 cut(s)	806, 849
TaaI	ACNGT	2 cut(s)	148, 494
TaiI	ACGT	2 cut(s)	188, 671
TaqI	TCGA	5 cut(s)	408, 432, 462, 497, 782
TasI	AATT	3 cut(s)	86, 642, 679
TauI	GCSGC	4 cut(s)	39, 74, 423, 713
TfiI	GAWTC	2 cut(s)	675, 794
Tru1I	TTAA	2 cut(s)	143, 444
Tru9I	TTAA	2 cut(s)	143, 444
TscAI	CASTG	1 cut(s)	699
TseFI	GTSAC	2 cut(s)	92, 148
TseI	GCWGC	3 cut(s)	155, 647, 755
Tsp45I	GTSAC	2 cut(s)	92, 148
TspDTI	ATGAA	2 cut(s)	17, 287
TspGWI	ACGGA	2 cut(s)	80, 345
TspRI	CASTG	1 cut(s)	699
VpaK11BI	GGWCC	1 cut(s)	108
XapI	RAATTY	1 cut(s)	86
XhoI	CTCGAG	1 cut(s)	407
XspI	CTAG	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.