Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011333

Physical Location & Seq

Genomic Coordinates Reverse (-)

5878454 .. 5879542

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGATGAAGTCAGTCTTGCTTCGTCCTTGTCCTTCTTCTACGCTTCTCTTCAAATCACACACAGAAGCTCACCCTCAAAAAATGGCTTCCACTGTTCGTTGCTCTTCCAGAAACCAAGCTCACATTCCGAAGCTCGAGCCCTTCAGCCGCTCCAAGTTGGACCGCGCCATTCAAGGCCCTACCCTGATCGAAAAGTGCGAGAACGAGCTCTCTGATTACTGTTCGACTCTTGAAGGAGACGAGTCTTATGGTTGCTGGAGGGCCTACTTTGAGCTCAAAGATCTCGAGAAAGAGACGCCGAAAGGAGATGTGGAGAAGCTGATTTTGCAAGCAGGGGGGATAAAGTCATTAGTGGGGTGTTTGCATGGAATTGCTGCAATGCAAAAGGGGAAGACGTATGGATTCAATTCAGCAAAGCCAGTGGAAGAAGTGAAAGCAGGGGAGAGGCTGTGTCCTATACCTGATGGGTTGCCCAAGTCAGCTGCCGAGCTAGAGGAAGAAGAGAAATCAAAAATGCCCGATTCGGCTTTCACGAGGCTTCTCAGGATCAAAGGGACTCATCCTGCTTGGTATTCACTGGCCCCCGACCATGAAACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006935 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0010154 GO:0010183 GO:0022414 GO:0032501 GO:0032502 GO:0036033 GO:0040011 GO:0042221 GO:0042330 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0044877 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050832 GO:0050896 GO:0050918 GO:0051704 GO:0051707 GO:0061458 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

22.21

Weight (kDa)

6.6

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15890 AT2G15890
fragaria_vesca	FvH4_2g07110
malus_domestica	MD05G1073200.v1.1 MD10G1087700.v1.1
prunus_persica	Prupe.8G113800_v2.0.a1 Prupe.8G113800_v2.0.a1 Prupe.8G113800_v2.0.a1
pyrus_communis	pycom10g07000
rosa_chinensis	RchiOBHm_Chr6g0259611
rosa_laevigata	RLG00000014518
rosa_multiflora	Rmu_sc0000536.1_g000031 Rmu_ssc0000050.1_g000007
rosa_roxburghii	Rroxscaffold_7G00206900
rosa_rugosa	Rorug05G0590000
rosa_samantha	Rh6AG106100 Rh6BG100500 Rh6CG095000 Rh6DG089100
rosa_wichuraiana	Rw6G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	150
AccII	CGCG	1 cut(s)	165
AciI	CCGC	2 cut(s)	148, 163
AclWI	GGATC	1 cut(s)	554
AcuI	CTGAAG	1 cut(s)	127
AcyI	GRCGYC	1 cut(s)	296
AgsI	TTSAA	4 cut(s)	52, 173, 233, 406
AjuI	GAANNNNNNNTTGG	2 cut(s)	108, 140
AluBI	AGCT	8 cut(s)	68, 119, 133, 208, 274, 319, 482, 490
AluI	AGCT	8 cut(s)	68, 119, 133, 208, 274, 319, 482, 490
Alw21I	GWGCWC	2 cut(s)	210, 276
Alw26I	GTCTC	2 cut(s)	231, 287
AlwI	GGATC	1 cut(s)	554
Ama87I	CYCGRG	2 cut(s)	134, 284
AoxI	GGCC	3 cut(s)	175, 261, 579
ApeKI	GCWGC	2 cut(s)	374, 482
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	4 cut(s)	160, 176, 261, 580
AsuHPI	GGTGA	1 cut(s)	62
AvaI	CYCGRG	2 cut(s)	134, 284
AvaII	GGWCC	1 cut(s)	160
BanII	GRGCYC	3 cut(s)	141, 210, 276
BauI	CACGAG	1 cut(s)	532
BbsI	GAAGAC	1 cut(s)	398
Bbv12I	GWGCWC	2 cut(s)	210, 276
BbvI	GCAGC	2 cut(s)	361, 469
BccI	CCATC	1 cut(s)	458
BcoDI	GTCTC	2 cut(s)	231, 287
BfaI	CTAG	1 cut(s)	491
BglII	AGATCT	1 cut(s)	280
BisI	GCNGC	3 cut(s)	148, 375, 483
BlsI	GCNGC	3 cut(s)	149, 376, 484
Bme18I	GGWCC	1 cut(s)	160
BmeT110I	CYCGRG	2 cut(s)	134, 284
BmgT120I	GGNCC	4 cut(s)	160, 176, 261, 580
BmiI	GGNNCC	1 cut(s)	582
BpiI	GAAGAC	1 cut(s)	398
BpmI	CTGGAG	1 cut(s)	277
BsaHI	GRCGYC	1 cut(s)	296
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bse1I	ACTGG	2 cut(s)	419, 582
Bse3DI	GCAATG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	559
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	556
BseNI	ACTGG	2 cut(s)	419, 582
BseXI	GCAGC	2 cut(s)	361, 469
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	3 cut(s)	177, 263, 581
BsiHKAI	GWGCWC	2 cut(s)	210, 276
BsiHKCI	CYCGRG	2 cut(s)	134, 284
BslFI	GGGAC	1 cut(s)	568
BsmAI	GTCTC	2 cut(s)	231, 287
BsmBI	CGTCTC	2 cut(s)	231, 287
BsmFI	GGGAC	1 cut(s)	568
BsnI	GGCC	3 cut(s)	177, 263, 581
BsoBI	CYCGRG	2 cut(s)	134, 284
Bsp1286I	GDGCHC	3 cut(s)	141, 210, 276
Bsp143I	GATC	3 cut(s)	186, 280, 546
BspACI	CCGC	2 cut(s)	148, 163
BspANI	GGCC	3 cut(s)	177, 263, 581
BspCNI	CTCAG	1 cut(s)	555
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	582
BspPI	GGATC	1 cut(s)	554
BspQI	GCTCTTC	1 cut(s)	109
BsrBI	CCGCTC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	419, 582
BssMI	GATC	3 cut(s)	186, 280, 546
BssNI	GRCGYC	1 cut(s)	296
BssSI	CACGAG	1 cut(s)	532
Bst2BI	CACGAG	1 cut(s)	532
Bst4CI	ACNGT	2 cut(s)	94, 221
Bst6I	CTCTTC	3 cut(s)	53, 109, 495
BstACI	GRCGYC	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	1 cut(s)	542
BstF5I	GGATG	1 cut(s)	559
BstFNI	CGCG	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	3 cut(s)	189, 283, 549
BstMAI	GTCTC	2 cut(s)	231, 287
BstMBI	GATC	3 cut(s)	186, 280, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	361, 469
BstV2I	GAAGAC	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	3 cut(s)	177, 263, 581
BtsCI	GGATG	1 cut(s)	559
BtsIMutI	CAGTG	3 cut(s)	90, 426, 575
Cac8I	GCNNGC	1 cut(s)	330
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	4 cut(s)	160, 176, 261, 580
CseI	GACGC	1 cut(s)	304
CspCI	CAANNNNNGTGG	2 cut(s)	402, 437
CviAII	CATG	2 cut(s)	365, 590
DdeI	CTNAG	1 cut(s)	542
DpnI	GATC	3 cut(s)	188, 282, 548
DpnII	GATC	3 cut(s)	186, 280, 546
Eam1104I	CTCTTC	3 cut(s)	53, 109, 495
EarI	CTCTTC	3 cut(s)	53, 109, 495
Ecl136II	GAGCTC	2 cut(s)	208, 274
Eco24I	GRGCYC	3 cut(s)	141, 210, 276
Eco47I	GGWCC	1 cut(s)	160
Eco53kI	GAGCTC	2 cut(s)	208, 274
Eco57I	CTGAAG	1 cut(s)	127
Eco88I	CYCGRG	2 cut(s)	134, 284
EcoICRI	GAGCTC	2 cut(s)	208, 274
EcoO109I	RGGNCCY	2 cut(s)	176, 261
EcoT38I	GRGCYC	3 cut(s)	141, 210, 276
Esp3I	CGTCTC	2 cut(s)	231, 287
FaeI	CATG	2 cut(s)	368, 593
FaiI	YATR	5 cut(s)	249, 366, 399, 458, 591
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	2 cut(s)	364, 589
Fnu4HI	GCNGC	3 cut(s)	148, 375, 483
FokI	GGATG	1 cut(s)	546
FriOI	GRGCYC	3 cut(s)	141, 210, 276
Fsp4HI	GCNGC	3 cut(s)	148, 375, 483
FspBI	CTAG	1 cut(s)	491
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	3 cut(s)	148, 375, 483
GsuI	CTGGAG	1 cut(s)	277
HaeIII	GGCC	3 cut(s)	177, 263, 581
HgaI	GACGC	1 cut(s)	304
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	2 cut(s)	368, 593
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HinfI	GANTC	5 cut(s)	226, 242, 402, 521, 556
HphI	GGTGA	1 cut(s)	62
Hpy188I	TCNGA	2 cut(s)	129, 214
Hpy188III	TCNNGA	6 cut(s)	108, 230, 284, 286, 532, 544
HpyAV	CCTTC	3 cut(s)	42, 151, 227
HpyCH4III	ACNGT	2 cut(s)	94, 221
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	4 cut(s)	328, 364, 377, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HpyF3I	CTNAG	1 cut(s)	542
HpySE526I	ACGT	1 cut(s)	395
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	2 cut(s)	368, 593
HspAI	GCGC	1 cut(s)	165
Kzo9I	GATC	3 cut(s)	186, 280, 546
LguI	GCTCTTC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	155
Lsp1109I	GCAGC	2 cut(s)	361, 469
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	1 cut(s)	395
MalI	GATC	3 cut(s)	188, 282, 548
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	3 cut(s)	186, 280, 546
MboII	GAAGA	7 cut(s)	27, 40, 96, 403, 437, 509, 512
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	3 cut(s)	141, 210, 276
MluCI	AATT	2 cut(s)	369, 406
MlyI	GAGTC	3 cut(s)	220, 251, 550
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	5 cut(s)	84, 252, 438, 487, 528
MspA1I	CMGCKG	1 cut(s)	482
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	325
NdeII	GATC	3 cut(s)	186, 280, 546
NlaIII	CATG	2 cut(s)	368, 593
NlaIV	GGNNCC	1 cut(s)	582
NmeAIII	GCCGAG	1 cut(s)	511
PaeR7I	CTCGAG	2 cut(s)	134, 284
PciSI	GCTCTTC	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 530
PfeI	GAWTC	2 cut(s)	402, 521
PkrI	GCNGC	3 cut(s)	149, 376, 484
PleI	GAGTC	3 cut(s)	220, 250, 550
PpsI	GAGTC	3 cut(s)	220, 250, 550
Psp124BI	GAGCTC	2 cut(s)	210, 276
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	4 cut(s)	160, 176, 261, 580
PspXI	VCTCGAGB	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	482
SacI	GAGCTC	2 cut(s)	210, 276
SapI	GCTCTTC	1 cut(s)	109
SatI	GCNGC	3 cut(s)	148, 375, 483
Sau3AI	GATC	3 cut(s)	186, 280, 546
Sau96I	GGNCC	4 cut(s)	160, 176, 261, 580
SchI	GAGTC	3 cut(s)	220, 251, 550
SduI	GDGCHC	3 cut(s)	141, 210, 276
Sfr274I	CTCGAG	2 cut(s)	134, 284
SinI	GGWCC	1 cut(s)	160
SlaI	CTCGAG	2 cut(s)	134, 284
SmlI	CTYRAG	2 cut(s)	134, 284
SmoI	CTYRAG	2 cut(s)	134, 284
Sse9I	AATT	2 cut(s)	369, 406
SsiI	CCGC	2 cut(s)	148, 163
SspMI	CTAG	1 cut(s)	491
SstI	GAGCTC	2 cut(s)	210, 276
TaaI	ACNGT	2 cut(s)	94, 221
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	4 cut(s)	135, 189, 224, 285
TasI	AATT	2 cut(s)	369, 406
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	402, 521
TscAI	CASTG	3 cut(s)	97, 426, 582
TseI	GCWGC	2 cut(s)	374, 482
TspDTI	ATGAA	1 cut(s)	20
TspRI	CASTG	3 cut(s)	97, 426, 582
VpaK11BI	GGWCC	1 cut(s)	160
XhoI	CTCGAG	2 cut(s)	134, 284
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.