Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011333

Physical Location & Seq

Genomic Coordinates Forward (+)

15445110 .. 15446479

Gene Structure 1370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1073200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGATAAAGTCAGTCATGCTTCGCTCTTGTCCGTCGTCTTCTCCTCTACACCGAGAAGCTTATCCCACTACACGACTGTCTCCGTCGTCGTCAACGGCAACAACGCCCAAGTTCGCGTCCACTGTCTGTTGCTCGTCGAGAAATCCCTCTTACATTCCGAAGCTCGAGCCTTTTAGCCGGTCAAAGTTTGACCGCGGCATTAAAGACCCGCCCCTGATTGAAAAGTGCGAGAACGAGCTTTCTGAGTACTGTTCGACGCTCCAAGGAGACGAGTCCTATGGCTGCTGGAGAGCCTATTTCGAGCTCAAGGATCTCGAGAAGGAGACGCCAAAAGAGGATGTGGAGAAGCTGATTCTCCAAGCAGGAGGTGTGAAGACGTTGGTGGGATGCCTACACGGGATTGCAGCAATCCAGAAAGACAAGAAGTACGGATTTAACTCGTCAAAGCCGTCGGTTGTGGGAAAAGAAGCGGAGAGACTCTGTCCCATACCGGATGGGTTGCCGAAATCGGCTGAGGAGATGGAGGAAGAAGAAAGAGGAAGAATGCCGGATTCACCCTTCACTAGGCTCCTTAGAATCAAGGGTACGCACCCTGCATGGTACTCCCCCTCCCCTGACCATGAAACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006935 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0010154 GO:0010183 GO:0022414 GO:0032501 GO:0032502 GO:0036033 GO:0040011 GO:0042221 GO:0042330 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0044877 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050832 GO:0050896 GO:0050918 GO:0051704 GO:0051707 GO:0061458 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

23.45

Weight (kDa)

6.46

Isoelectric Point (pI)

59.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15890 AT2G15890
fragaria_vesca	FvH4_2g07110
malus_domestica	MD05G1073200.v1.1 MD10G1087700.v1.1
prunus_persica	Prupe.8G113800_v2.0.a1 Prupe.8G113800_v2.0.a1 Prupe.8G113800_v2.0.a1
pyrus_communis	pycom10g07000
rosa_chinensis	RchiOBHm_Chr6g0259611
rosa_laevigata	RLG00000014518
rosa_multiflora	Rmu_sc0000536.1_g000031 Rmu_ssc0000050.1_g000007
rosa_roxburghii	Rroxscaffold_7G00206900
rosa_rugosa	Rorug05G0590000
rosa_samantha	Rh6AG106100 Rh6BG100500 Rh6CG095000 Rh6DG089100
rosa_wichuraiana	Rw6G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	116, 195
AciI	CCGC	4 cut(s)	193, 195, 209, 470
AclWI	GGATC	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	326
AfaI	GTAC	4 cut(s)	248, 428, 586, 602
AfiI	CCNNNNNNNGG	1 cut(s)	564
AgsI	TTSAA	1 cut(s)	221
AluBI	AGCT	5 cut(s)	59, 163, 238, 304, 349
AluI	AGCT	5 cut(s)	59, 163, 238, 304, 349
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	4 cut(s)	84, 261, 317, 469
AlwI	GGATC	1 cut(s)	318
Ama87I	CYCGRG	2 cut(s)	164, 314
ApeKI	GCWGC	2 cut(s)	282, 404
AsuHPI	GGTGA	1 cut(s)	546
AvaI	CYCGRG	2 cut(s)	164, 314
BanII	GRGCYC	1 cut(s)	306
BbsI	GAAGAC	2 cut(s)	30, 380
Bbv12I	GWGCWC	1 cut(s)	306
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	2 cut(s)	269, 416
BccI	CCATC	2 cut(s)	488, 514
BceAI	ACGGC	2 cut(s)	111, 433
BcoDI	GTCTC	4 cut(s)	84, 261, 317, 469
BfaI	CTAG	1 cut(s)	564
BisI	GCNGC	3 cut(s)	196, 283, 405
BlsI	GCNGC	3 cut(s)	197, 284, 406
BmcAI	AGTACT	1 cut(s)	248
BmeT110I	CYCGRG	2 cut(s)	164, 314
BmiI	GGNNCC	1 cut(s)	569
BmsI	GCATC	1 cut(s)	377
BpiI	GAAGAC	2 cut(s)	30, 380
BpmI	CTGGAG	1 cut(s)	307
Bpu10I	CCTNAGC	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	290
BsaHI	GRCGYC	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	193, 262
BsaWI	WCCGGW	1 cut(s)	490
BsaXI	ACNNNNNCTCC	2 cut(s)	593, 623
Bsc4I	CCNNNNNNNGG	1 cut(s)	564
Bse118I	RCCGGY	1 cut(s)	177
BseDI	CCNNGG	2 cut(s)	193, 262
BseGI	GGATG	3 cut(s)	343, 392, 499
BseLI	CCNNNNNNNGG	1 cut(s)	564
BseMII	CTCAG	2 cut(s)	234, 504
BseRI	GAGGAG	2 cut(s)	33, 530
BseXI	GCAGC	2 cut(s)	269, 416
Bsh1236I	CGCG	2 cut(s)	116, 195
BsiHKAI	GWGCWC	1 cut(s)	306
BsiHKCI	CYCGRG	2 cut(s)	164, 314
BsiSI	CCGG	3 cut(s)	178, 491, 548
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	1 cut(s)	564
BsmAI	GTCTC	4 cut(s)	84, 261, 317, 469
BsmBI	CGTCTC	2 cut(s)	261, 317
BsmFI	GGGAC	1 cut(s)	468
BsmI	GAATGC	1 cut(s)	549
BsoBI	CYCGRG	2 cut(s)	164, 314
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	4 cut(s)	193, 195, 209, 470
BspCNI	CTCAG	2 cut(s)	235, 505
BspFNI	CGCG	2 cut(s)	116, 195
BspLI	GGNNCC	1 cut(s)	569
BspPI	GGATC	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	177
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	193, 262
BssMI	GATC	1 cut(s)	310
BssNI	GRCGYC	1 cut(s)	326
BssT1I	CCWWGG	1 cut(s)	262
Bst4CI	ACNGT	3 cut(s)	78, 124, 251
BstACI	GRCGYC	1 cut(s)	326
BstDEI	CTNAG	3 cut(s)	243, 513, 572
BstDSI	CCRYGG	1 cut(s)	193
BstENI	CCTNNNNNAGG	1 cut(s)	562
BstF5I	GGATG	3 cut(s)	343, 392, 499
BstFNI	CGCG	2 cut(s)	116, 195
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	4 cut(s)	84, 261, 317, 469
BstMBI	GATC	1 cut(s)	310
BstUI	CGCG	2 cut(s)	116, 195
BstV1I	GCAGC	2 cut(s)	269, 416
BstV2I	GAAGAC	2 cut(s)	30, 380
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	343, 392, 499
BtsIMutI	CAGTG	1 cut(s)	120
Cfr10I	RCCGGY	1 cut(s)	177
Cfr42I	CCGCGG	1 cut(s)	196
CseI	GACGC	3 cut(s)	105, 265, 334
Csp6I	GTAC	4 cut(s)	247, 427, 585, 601
CviAII	CATG	3 cut(s)	16, 597, 620
CviQI	GTAC	4 cut(s)	247, 427, 585, 601
DdeI	CTNAG	3 cut(s)	243, 513, 572
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	306
Eco53kI	GAGCTC	1 cut(s)	304
Eco88I	CYCGRG	2 cut(s)	164, 314
EcoICRI	GAGCTC	1 cut(s)	304
EcoNI	CCTNNNNNAGG	1 cut(s)	562
EcoT14I	CCWWGG	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	262
Esp3I	CGTCTC	2 cut(s)	261, 317
FaeI	CATG	3 cut(s)	19, 600, 623
FaiI	YATR	5 cut(s)	17, 279, 488, 598, 621
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	3 cut(s)	15, 596, 619
FauI	CCCGC	1 cut(s)	216
Fnu4HI	GCNGC	3 cut(s)	196, 283, 405
FokI	GGATG	3 cut(s)	350, 399, 506
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	3 cut(s)	196, 283, 405
FspBI	CTAG	1 cut(s)	564
GluI	GCNGC	3 cut(s)	196, 283, 405
GsuI	CTGGAG	1 cut(s)	307
HapII	CCGG	3 cut(s)	178, 491, 548
HgaI	GACGC	3 cut(s)	105, 265, 334
Hin1I	GRCGYC	1 cut(s)	326
Hin1II	CATG	3 cut(s)	19, 600, 623
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	5 cut(s)	272, 352, 477, 551, 576
HpaII	CCGG	3 cut(s)	178, 491, 548
HphI	GGTGA	1 cut(s)	546
Hpy166II	GTNNAC	2 cut(s)	93, 120
Hpy188I	TCNGA	2 cut(s)	159, 244
Hpy188III	TCNNGA	4 cut(s)	138, 314, 316, 412
Hpy8I	GTNNAC	2 cut(s)	93, 120
Hpy99I	CGWCG	6 cut(s)	37, 88, 91, 139, 259, 454
HpyAV	CCTTC	2 cut(s)	313, 568
HpyCH4III	ACNGT	3 cut(s)	78, 124, 251
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	2 cut(s)	404, 596
HpyF3I	CTNAG	3 cut(s)	243, 513, 572
HpySE526I	ACGT	1 cut(s)	377
Hsp92I	GRCGYC	1 cut(s)	326
Hsp92II	CATG	3 cut(s)	19, 600, 623
KspI	CCGCGG	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	2 cut(s)	264, 573
LpnPI	CCDG	9 cut(s)	191, 227, 271, 348, 425, 504, 561, 606, 627
Lsp1109I	GCAGC	2 cut(s)	269, 416
LweI	GCATC	1 cut(s)	377
MaeI	CTAG	1 cut(s)	564
MaeII	ACGT	1 cut(s)	377
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	5 cut(s)	30, 385, 539, 542, 552
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	306
MlyI	GAGTC	2 cut(s)	281, 471
MnlI	CCTC	8 cut(s)	54, 157, 328, 359, 508, 517, 530, 619
MseI	TTAA	2 cut(s)	201, 435
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	3 cut(s)	178, 491, 548
Mva1269I	GAATGC	1 cut(s)	549
MvnI	CGCG	2 cut(s)	116, 195
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	3 cut(s)	19, 600, 623
NlaIV	GGNNCC	1 cut(s)	569
PaeR7I	CTCGAG	2 cut(s)	164, 314
PcsI	WCGNNNNNNNCGW	1 cut(s)	446
PctI	GAATGC	1 cut(s)	549
PfeI	GAWTC	3 cut(s)	352, 551, 576
PflFI	GACNNNGTC	1 cut(s)	480
PkrI	GCNGC	3 cut(s)	197, 284, 406
PleI	GAGTC	2 cut(s)	280, 471
PpsI	GAGTC	2 cut(s)	280, 471
Psp124BI	GAGCTC	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	569
PspXI	VCTCGAGB	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	310
PsyI	GACNNNGTC	1 cut(s)	480
RsaI	GTAC	4 cut(s)	248, 428, 586, 602
RsaNI	GTAC	4 cut(s)	247, 427, 585, 601
SacI	GAGCTC	1 cut(s)	306
SacII	CCGCGG	1 cut(s)	196
SaqAI	TTAA	2 cut(s)	201, 435
SatI	GCNGC	3 cut(s)	196, 283, 405
Sau3AI	GATC	1 cut(s)	310
ScaI	AGTACT	1 cut(s)	248
SchI	GAGTC	2 cut(s)	281, 471
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	7 cut(s)	61, 165, 240, 306, 351, 370, 380
SfaNI	GCATC	1 cut(s)	377
Sfr274I	CTCGAG	2 cut(s)	164, 314
Sfr303I	CCGCGG	1 cut(s)	196
SgrBI	CCGCGG	1 cut(s)	196
SlaI	CTCGAG	2 cut(s)	164, 314
SmlI	CTYRAG	3 cut(s)	164, 305, 314
SmoI	CTYRAG	3 cut(s)	164, 305, 314
SsiI	CCGC	4 cut(s)	193, 195, 209, 470
SspMI	CTAG	1 cut(s)	564
SstI	GAGCTC	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	3 cut(s)	78, 124, 251
TaiI	ACGT	1 cut(s)	380
TaqI	TCGA	5 cut(s)	137, 165, 254, 300, 315
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	3 cut(s)	352, 551, 576
Tru1I	TTAA	2 cut(s)	201, 435
Tru9I	TTAA	2 cut(s)	201, 435
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	2 cut(s)	282, 404
TspGWI	ACGGA	3 cut(s)	21, 72, 444
TspRI	CASTG	1 cut(s)	127
Tth111I	GACNNNGTC	1 cut(s)	480
XagI	CCTNNNNNAGG	1 cut(s)	562
XhoI	CTCGAG	2 cut(s)	164, 314
XspI	CTAG	1 cut(s)	564
ZrmI	AGTACT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.