Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000050.1

Orthogroup ID

OG0011333

Physical Location & Seq

Genomic Coordinates Forward (+)

33001 .. 33823

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000050.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgatgaagtcagtcttgcttcgttcttgtccatcttcttctcctcttctcttcaaatctcacggagaagctcagcggcctcagcctcaaaaaatggcttattccactgttcgttgctcttccagaaacccagcttacattcccaagctcgagcccttcagccgctccaagttcgatcgcgccattaaaggccctaccctgatcgaaaagtgcgagaacgagctgtctgattactgttcgacgctggaaggtgatgagtcttatggttgctggagagcttactttgagctcaaagatcttgagaaagagacgccgaaagaagatgtggagaagttgattttgcaagcagggggaataaagtcattagtgggatgtttgcatggaattactgcaattcaaaaggggaagacgtatggattcaattcagcaaagccaatggaagaagcaaaatcaagggagaggctatgtcctataccagatgggttgccgaagtcagctgctgagctagaggaagaggagaaatcgaaaatgcccgattctgccttcaccaggcttctcagggtcaaagggactcatcctgcgtggtattccctggcccctgaccatgaaacagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006935 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0010154 GO:0010183 GO:0022414 GO:0032501 GO:0032502 GO:0036033 GO:0040011 GO:0042221 GO:0042330 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0044877 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050832 GO:0050896 GO:0050918 GO:0051704 GO:0051707 GO:0061458 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

22.99

Weight (kDa)

7.56

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15890 AT2G15890
fragaria_vesca	FvH4_2g07110
malus_domestica	MD05G1073200.v1.1 MD10G1087700.v1.1
prunus_persica	Prupe.8G113800_v2.0.a1 Prupe.8G113800_v2.0.a1 Prupe.8G113800_v2.0.a1
pyrus_communis	pycom10g07000
rosa_chinensis	RchiOBHm_Chr6g0259611
rosa_laevigata	RLG00000014518
rosa_multiflora	Rmu_sc0000536.1_g000031 Rmu_ssc0000050.1_g000007
rosa_roxburghii	Rroxscaffold_7G00206900
rosa_rugosa	Rorug05G0590000
rosa_samantha	Rh6AG106100 Rh6BG100500 Rh6CG095000 Rh6DG089100
rosa_wichuraiana	Rw6G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	165
AccII	CGCG	1 cut(s)	180
AciI	CCGC	2 cut(s)	76, 163
AcuI	CTGAAG	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	549
AgsI	TTSAA	3 cut(s)	55, 398, 421
AjnI	CCWGG	2 cut(s)	548, 591
AluBI	AGCT	8 cut(s)	71, 134, 148, 223, 278, 289, 497, 505
AluI	AGCT	8 cut(s)	71, 134, 148, 223, 278, 289, 497, 505
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	302
AlwNI	CAGNNNCTG	1 cut(s)	500
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	3 cut(s)	77, 190, 594
ApeKI	GCWGC	1 cut(s)	497
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	2 cut(s)	191, 595
AsuHPI	GGTGA	2 cut(s)	263, 538
AvaI	CYCGRG	1 cut(s)	149
BanII	GRGCYC	2 cut(s)	156, 291
BbsI	GAAGAC	1 cut(s)	413
Bbv12I	GWGCWC	1 cut(s)	291
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	2 cut(s)	40, 473
BciT130I	CCWGG	2 cut(s)	550, 593
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	1 cut(s)	506
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	3 cut(s)	77, 163, 498
BlpI	GCTNAGC	2 cut(s)	72, 501
BlsI	GCNGC	3 cut(s)	78, 164, 499
Bme1390I	CCNGG	2 cut(s)	550, 593
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	191, 595
BmiI	GGNNCC	1 cut(s)	597
BmrFI	CCNGG	2 cut(s)	550, 593
BpiI	GAAGAC	1 cut(s)	413
BpmI	CTGGAG	1 cut(s)	292
Bpu10I	CCTNAGC	1 cut(s)	81
Bpu1102I	GCTNAGC	2 cut(s)	72, 501
BpuEI	CTTGAG	1 cut(s)	320
BsaHI	GRCGYC	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	591
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
BseBI	CCWGG	2 cut(s)	550, 593
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	2 cut(s)	377, 574
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMII	CTCAG	4 cut(s)	86, 95, 492, 571
BseRI	GAGGAG	2 cut(s)	33, 530
BseXI	GCAGC	1 cut(s)	484
BseYI	CCCAGC	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	180
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	3 cut(s)	79, 192, 596
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	291
BsiHKCI	CYCGRG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmAI	GTCTC	1 cut(s)	302
BsmBI	CGTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	583
BsnI	GGCC	3 cut(s)	79, 192, 596
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	156, 291
Bsp143I	GATC	3 cut(s)	175, 201, 295
Bsp1720I	GCTNAGC	2 cut(s)	72, 501
BspACI	CCGC	2 cut(s)	76, 163
BspANI	GGCC	3 cut(s)	79, 192, 596
BspCNI	CTCAG	4 cut(s)	85, 94, 493, 570
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	597
BspQI	GCTCTTC	1 cut(s)	124
BsrBI	CCGCTC	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	591
BssMI	GATC	3 cut(s)	175, 201, 295
BssNI	GRCGYC	1 cut(s)	311
Bst2UI	CCWGG	2 cut(s)	550, 593
Bst4CI	ACNGT	2 cut(s)	109, 236
Bst6I	CTCTTC	4 cut(s)	51, 56, 124, 507
BstACI	GRCGYC	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	4 cut(s)	72, 81, 501, 557
BstENI	CCTNNNNNAGG	1 cut(s)	547
BstF5I	GGATG	2 cut(s)	377, 574
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	3 cut(s)	178, 204, 298
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	3 cut(s)	175, 201, 295
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNI	CCWGG	2 cut(s)	550, 593
BstSCI	CCNGG	2 cut(s)	548, 591
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	484
BstV2I	GAAGAC	1 cut(s)	413
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BsuRI	GGCC	3 cut(s)	79, 192, 596
BtsCI	GGATG	2 cut(s)	377, 574
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	345
CaiI	CAGNNNCTG	1 cut(s)	500
CfoI	GCGC	1 cut(s)	182
Cfr13I	GGNCC	2 cut(s)	191, 595
CseI	GACGC	2 cut(s)	250, 319
CviAII	CATG	2 cut(s)	380, 605
DdeI	CTNAG	4 cut(s)	72, 81, 501, 557
DpnI	GATC	3 cut(s)	177, 203, 297
DpnII	GATC	3 cut(s)	175, 201, 295
Eam1104I	CTCTTC	4 cut(s)	51, 56, 124, 507
EarI	CTCTTC	4 cut(s)	51, 56, 124, 507
Ecl136II	GAGCTC	1 cut(s)	289
Eco24I	GRGCYC	2 cut(s)	156, 291
Eco53kI	GAGCTC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	142
Eco88I	CYCGRG	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	289
EcoNI	CCTNNNNNAGG	1 cut(s)	547
EcoO109I	RGGNCCY	1 cut(s)	191
EcoRII	CCWGG	2 cut(s)	548, 591
EcoT38I	GRGCYC	2 cut(s)	156, 291
Esp3I	CGTCTC	1 cut(s)	302
FaeI	CATG	2 cut(s)	383, 608
FaiI	YATR	6 cut(s)	264, 381, 414, 466, 473, 606
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	2 cut(s)	379, 604
Fnu4HI	GCNGC	3 cut(s)	77, 163, 498
FokI	GGATG	2 cut(s)	384, 561
FriOI	GRGCYC	2 cut(s)	156, 291
Fsp4HI	GCNGC	3 cut(s)	77, 163, 498
FspBI	CTAG	1 cut(s)	506
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	3 cut(s)	77, 163, 498
GsaI	CCCAGC	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	292
HaeIII	GGCC	3 cut(s)	79, 192, 596
HgaI	GACGC	2 cut(s)	250, 319
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	311
Hin1II	CATG	2 cut(s)	383, 608
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HinfI	GANTC	4 cut(s)	257, 417, 536, 571
HphI	GGTGA	2 cut(s)	263, 538
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	2 cut(s)	123, 299
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	3 cut(s)	166, 242, 553
HpyCH4III	ACNGT	2 cut(s)	109, 236
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	3 cut(s)	343, 379, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	4 cut(s)	72, 81, 501, 557
HpySE526I	ACGT	1 cut(s)	410
Hsp92I	GRCGYC	1 cut(s)	311
Hsp92II	CATG	2 cut(s)	383, 608
HspAI	GCGC	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	175, 201, 295
LguI	GCTCTTC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	170
Lsp1109I	GCAGC	1 cut(s)	484
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	1 cut(s)	410
MalI	GATC	3 cut(s)	177, 203, 297
MbiI	CCGCTC	1 cut(s)	165
MboI	GATC	3 cut(s)	175, 201, 295
MboII	GAAGA	9 cut(s)	27, 30, 38, 43, 111, 332, 418, 452, 524
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	2 cut(s)	156, 291
MluCI	AATT	3 cut(s)	384, 393, 421
MlyI	GAGTC	2 cut(s)	266, 565
MnlI	CCTC	6 cut(s)	54, 90, 96, 453, 502, 508
MseI	TTAA	1 cut(s)	186
MspA1I	CMGCKG	2 cut(s)	76, 497
MspR9I	CCNGG	2 cut(s)	550, 593
MvaI	CCWGG	2 cut(s)	550, 593
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeII	GATC	3 cut(s)	175, 201, 295
NlaIII	CATG	2 cut(s)	383, 608
NlaIV	GGNNCC	1 cut(s)	597
PaeR7I	CTCGAG	1 cut(s)	149
PciSI	GCTCTTC	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	417, 536
PkrI	GCNGC	3 cut(s)	78, 164, 499
Ple19I	CGATCG	1 cut(s)	178
PleI	GAGTC	2 cut(s)	265, 565
PpsI	GAGTC	2 cut(s)	265, 565
Psp124BI	GAGCTC	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	548, 591
PspFI	CCCAGC	1 cut(s)	130
PspGI	CCWGG	2 cut(s)	548, 591
PspN4I	GGNNCC	1 cut(s)	597
PspPI	GGNCC	2 cut(s)	191, 595
PspXI	VCTCGAGB	1 cut(s)	149
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	295
PvuI	CGATCG	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	497
SacI	GAGCTC	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	3 cut(s)	77, 163, 498
Sau3AI	GATC	3 cut(s)	175, 201, 295
Sau96I	GGNCC	2 cut(s)	191, 595
SchI	GAGTC	2 cut(s)	266, 565
ScrFI	CCNGG	2 cut(s)	550, 593
SduI	GDGCHC	2 cut(s)	156, 291
Sfr274I	CTCGAG	1 cut(s)	149
SlaI	CTCGAG	1 cut(s)	149
SmlI	CTYRAG	2 cut(s)	149, 299
SmoI	CTYRAG	2 cut(s)	149, 299
Sse9I	AATT	3 cut(s)	384, 393, 421
SsiI	CCGC	2 cut(s)	76, 163
SspMI	CTAG	1 cut(s)	506
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	548, 591
TaaI	ACNGT	2 cut(s)	109, 236
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	5 cut(s)	150, 174, 204, 239, 524
TasI	AATT	3 cut(s)	384, 393, 421
TauI	GCSGC	2 cut(s)	79, 165
TfiI	GAWTC	2 cut(s)	417, 536
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	112
TseI	GCWGC	1 cut(s)	497
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	112
XagI	CCTNNNNNAGG	1 cut(s)	547
XhoI	CTCGAG	1 cut(s)	149
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.