Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008409

Physical Location & Seq

Genomic Coordinates Reverse (-)

78819121 .. 78823939

Gene Structure 4819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0590000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAGGCGTTTCTATTTCTTTTCCAGCACCGCGTTACAGTGGGACCTGATTGAAGCTTACATCAACGGAAGTAATGCTTTGCTTAAATATGTGTTCTTCATGCTAACTCGTCCCTTTCGTCCTTGGATTGACCCACGTGGTGCCAACATGATTCCCATCCATTTAATGCTCTTCAAGCAATCCGCAAGCCGTCTCTCCATTCATTCTCCAATCAACCGTGATGAACCAAACCTCGTGACTGAAAGACGGTTCATGCTCCCTATCTCAGATGTCGTACCTGAAAGGGGTGTGTATACGGAGATCATTGCCGGCTATCTTTCCACCATGTGTGTCCCAGGAAGTCTGCACCCAGATATTATTCAAAAGATATATAACGTGATTGAAGTGGCCGACCCTGGTTTGCCTATTGATGTGACAATAGAGGACGTGACTGTTAACGTATTGGGCAAGTCGACAGTTCCTCCAACCAAAACTGTATTTCACAAAGTGAGACCTGATAGTTTGGAATCTACTATTAGACAGAAGCCATGTGCTGGTTGTCATGAGAGCCTTGATCACTTTTATGATGCAGAAGAAGGGATTACTCGCTTGCCCTGCTTGCACCTTTTTCATGAAGGTTGCCTTGTCCAGTGTTTGGATCTGATTGATGAGCCTGCATGCCCCATCTGCAGTTACCCACTTGTGGAGTTTGTTGAGCCATCAAAACCCTTGGTGGACCTGGATTGGCCTATGTTGCTCATGATGGCGGCAAGCGGTATAATAACTGTTACGCTTCTTTGCAGACTATTGAAGCGGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0006605 GO:0006622 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0007041 GO:0008104 GO:0008150 GO:0008289 GO:0008333 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016482 GO:0019898 GO:0031090 GO:0031312 GO:0031313 GO:0031410 GO:0031982 GO:0033036 GO:0033365 GO:0034613 GO:0035091 GO:0042802 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061462 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098805 GO:0098927

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nexin_C PX PXA

Protein Analysis

266

Amino Acids

30.14

Weight (kDa)

5.75

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15900
fragaria_vesca	FvH4_2g07180 FvH4_2g07180 FvH4_2g07180 FvH4_2g07180 FvH4_2g07180 FvH4_2g07180
malus_domestica	MD05G1073000.v1.1 MD10G1087600.v1.1
prunus_persica	Prupe.8G113600_v2.0.a1 Prupe.8G113600_v2.0.a1
pyrus_communis	pycom05g06550 pycom10g06990
rosa_chinensis	RchiOBHm_Chr6g0259621
rosa_laevigata	RLG00000014517
rosa_multiflora	Rmu_sc0000536.1_g000017
rosa_roxburghii	Rroxscaffold_7G00206920
rosa_rugosa	Rorug05G0590000
rosa_samantha	Rh6AG106200 Rh6BG100700 Rh6CG095300 Rh6DG089200
rosa_wichuraiana	Rw6G009180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	140
AccB7I	CCANNNNNTGG	2 cut(s)	533, 634
AccI	GTMKAC	2 cut(s)	293, 452
AccII	CGCG	1 cut(s)	32
AciI	CCGC	5 cut(s)	30, 183, 746, 753, 793
AclWI	GGATC	1 cut(s)	645
AcoI	YGGCCR	1 cut(s)	387
AcvI	CACGTG	1 cut(s)	137
AdeI	CACNNNGTG	3 cut(s)	140, 327, 487
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	4 cut(s)	284, 533, 634, 682
AgsI	TTSAA	5 cut(s)	53, 175, 362, 383, 790
AjiI	CACGTC	1 cut(s)	427
AjnI	CCWGG	3 cut(s)	334, 394, 717
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
Alw26I	GTCTC	2 cut(s)	197, 484
AlwI	GGATC	1 cut(s)	645
AoxI	GGCC	3 cut(s)	387, 725, 794
AspS9I	GGNCC	3 cut(s)	43, 715, 795
AvaII	GGWCC	2 cut(s)	43, 715
BanI	GGYRCC	1 cut(s)	140
BauI	CACGAG	1 cut(s)	233
BbrPI	CACGTG	1 cut(s)	137
BccI	CCATC	4 cut(s)	164, 671, 706, 736
BceAI	ACGGC	1 cut(s)	174
BciT130I	CCWGG	3 cut(s)	336, 396, 719
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	2 cut(s)	197, 484
BfmI	CTRYAG	1 cut(s)	667
BisI	GCNGC	2 cut(s)	747, 794
BlsI	GCNGC	2 cut(s)	748, 795
Bme1390I	CCNGG	3 cut(s)	336, 396, 719
Bme18I	GGWCC	2 cut(s)	43, 715
BmgBI	CACGTC	1 cut(s)	427
BmgT120I	GGNCC	3 cut(s)	43, 715, 795
BmiI	GGNNCC	2 cut(s)	44, 142
BmrFI	CCNGG	3 cut(s)	336, 396, 719
BmsI	GCATC	1 cut(s)	556
BsaAI	YACGTR	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	4 cut(s)	122, 334, 394, 708
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	4 cut(s)	284, 533, 634, 682
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	628
Bse3DI	GCAATG	1 cut(s)	303
Bse8I	GATNNNNATC	1 cut(s)	155
BseBI	CCWGG	3 cut(s)	336, 396, 719
BseDI	CCNNGG	4 cut(s)	122, 334, 394, 708
BseGI	GGATG	1 cut(s)	156
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	4 cut(s)	284, 533, 634, 682
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	628
BsgI	GTGCAG	1 cut(s)	329
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	3 cut(s)	389, 727, 796
BshNI	GGYRCC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	309
BslFI	GGGAC	3 cut(s)	56, 96, 317
BslI	CCNNNNNNNGG	4 cut(s)	284, 533, 634, 682
BsmAI	GTCTC	2 cut(s)	197, 484
BsmBI	CGTCTC	1 cut(s)	197
BsmFI	GGGAC	3 cut(s)	56, 96, 317
BsnI	GGCC	3 cut(s)	389, 727, 796
Bso31I	GGTCTC	1 cut(s)	484
Bsp143I	GATC	3 cut(s)	300, 553, 637
BspACI	CCGC	5 cut(s)	30, 183, 746, 753, 793
BspANI	GGCC	3 cut(s)	389, 727, 796
BspCNI	CTCAG	1 cut(s)	278
BspFNI	CGCG	1 cut(s)	32
BspHI	TCATGA	3 cut(s)	541, 610, 738
BspLI	GGNNCC	2 cut(s)	44, 142
BspMAI	CTGCAG	1 cut(s)	671
BspPI	GGATC	1 cut(s)	645
BspQI	GCTCTTC	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	484
BsrDI	GCAATG	1 cut(s)	303
BsrFI	RCCGGY	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	628
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	4 cut(s)	122, 334, 394, 708
BssMI	GATC	3 cut(s)	300, 553, 637
BssNAI	GTATAC	1 cut(s)	294
BssSI	CACGAG	1 cut(s)	233
BssT1I	CCWWGG	2 cut(s)	122, 708
Bst1107I	GTATAC	1 cut(s)	294
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	3 cut(s)	336, 396, 719
Bst4CI	ACNGT	7 cut(s)	39, 218, 249, 433, 457, 475, 766
Bst6I	CTCTTC	1 cut(s)	176
BstBAI	YACGTR	1 cut(s)	137
BstC8I	GCNNGC	7 cut(s)	187, 310, 590, 599, 654, 658, 751
BstDEI	CTNAG	1 cut(s)	265
BstF5I	GGATG	1 cut(s)	156
BstFNI	CGCG	1 cut(s)	32
BstKTI	GATC	3 cut(s)	303, 556, 640
BstMAI	GTCTC	2 cut(s)	197, 484
BstMBI	GATC	3 cut(s)	300, 553, 637
BstMWI	GCNNNNNNNGC	5 cut(s)	175, 594, 598, 666, 733
BstNI	CCWGG	3 cut(s)	336, 396, 719
BstNSI	RCATGY	1 cut(s)	660
BstSCI	CCNGG	3 cut(s)	334, 394, 717
BstSFI	CTRYAG	1 cut(s)	667
BstUI	CGCG	1 cut(s)	32
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BstZ17I	GTATAC	1 cut(s)	294
BsuRI	GGCC	3 cut(s)	389, 727, 796
BtrI	CACGTC	1 cut(s)	427
BtsCI	GGATG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	44, 635
Cac8I	GCNNGC	7 cut(s)	187, 310, 590, 599, 654, 658, 751
CciI	TCATGA	3 cut(s)	541, 610, 738
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	3 cut(s)	43, 715, 795
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	9 cut(s)	100, 148, 253, 325, 528, 542, 611, 657, 739
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	1 cut(s)	265
DpnI	GATC	3 cut(s)	302, 555, 639
DpnII	GATC	3 cut(s)	300, 553, 637
DraIII	CACNNNGTG	3 cut(s)	140, 327, 487
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	122, 708
Eco31I	GGTCTC	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	43, 715
Eco72I	CACGTG	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	3 cut(s)	334, 394, 717
EcoT14I	CCWWGG	2 cut(s)	122, 708
ErhI	CCWWGG	2 cut(s)	122, 708
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	9 cut(s)	103, 151, 256, 328, 531, 545, 614, 660, 742
FalI	AAGNNNNNCTT	4 cut(s)	61, 93, 606, 638
FaqI	GGGAC	3 cut(s)	56, 96, 317
FatI	CATG	9 cut(s)	99, 147, 252, 324, 527, 541, 610, 656, 738
FbaI	TGATCA	1 cut(s)	553
FblI	GTMKAC	2 cut(s)	293, 452
Fnu4HI	GCNGC	2 cut(s)	747, 794
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	2 cut(s)	747, 794
GluI	GCNGC	2 cut(s)	747, 794
HaeIII	GGCC	3 cut(s)	389, 727, 796
HapII	CCGG	1 cut(s)	309
Hin1II	CATG	9 cut(s)	103, 151, 256, 328, 531, 545, 614, 660, 742
HincII	GTYRAC	2 cut(s)	436, 453
HindII	GTYRAC	2 cut(s)	436, 453
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	2 cut(s)	151, 506
HpaI	GTTAAC	1 cut(s)	436
HpaII	CCGG	1 cut(s)	309
Hpy166II	GTNNAC	4 cut(s)	294, 436, 453, 715
Hpy188I	TCNGA	2 cut(s)	268, 642
Hpy188III	TCNNGA	4 cut(s)	235, 542, 611, 739
Hpy8I	GTNNAC	4 cut(s)	294, 436, 453, 715
HpyAV	CCTTC	2 cut(s)	569, 608
HpyCH4III	ACNGT	7 cut(s)	39, 218, 249, 433, 457, 475, 766
HpyCH4IV	ACGT	4 cut(s)	136, 375, 426, 438
HpyCH4V	TGCA	6 cut(s)	346, 569, 601, 656, 669, 780
HpyF10VI	GCNNNNNNNGC	5 cut(s)	175, 594, 598, 666, 733
HpyF3I	CTNAG	1 cut(s)	265
HpySE526I	ACGT	4 cut(s)	136, 375, 426, 438
Hsp92II	CATG	9 cut(s)	103, 151, 256, 328, 531, 545, 614, 660, 742
KroI	GCCGGC	1 cut(s)	308
KroNI	GCCGGC	1 cut(s)	310
Ksp22I	TGATCA	1 cut(s)	553
KspAI	GTTAAC	1 cut(s)	436
Kzo9I	GATC	3 cut(s)	300, 553, 637
LguI	GCTCTTC	1 cut(s)	176
LmnI	GCTCC	1 cut(s)	261
LweI	GCATC	1 cut(s)	556
MaeII	ACGT	4 cut(s)	136, 375, 426, 438
MaeIII	GTNAC	6 cut(s)	33, 235, 412, 427, 671, 766
MalI	GATC	3 cut(s)	302, 555, 639
MboI	GATC	3 cut(s)	300, 553, 637
MboII	GAAGA	3 cut(s)	88, 163, 584
MflI	RGATCY	1 cut(s)	637
MmeI	TCCRAC	1 cut(s)	488
MnlI	CCTC	3 cut(s)	242, 415, 471
MroNI	GCCGGC	1 cut(s)	308
MseI	TTAA	3 cut(s)	84, 164, 435
MslI	CAYNNNNRTG	1 cut(s)	561
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	3 cut(s)	336, 396, 719
MvaI	CCWGG	3 cut(s)	336, 396, 719
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	5 cut(s)	175, 594, 598, 666, 733
NaeI	GCCGGC	1 cut(s)	310
NdeII	GATC	3 cut(s)	300, 553, 637
NgoMIV	GCCGGC	1 cut(s)	308
NlaIII	CATG	9 cut(s)	103, 151, 256, 328, 531, 545, 614, 660, 742
NlaIV	GGNNCC	2 cut(s)	44, 142
NmuCI	GTSAC	3 cut(s)	235, 412, 427
NspI	RCATGY	1 cut(s)	660
PaeI	GCATGC	1 cut(s)	660
PagI	TCATGA	3 cut(s)	541, 610, 738
PciSI	GCTCTTC	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	115
PdiI	GCCGGC	1 cut(s)	310
PfeI	GAWTC	2 cut(s)	151, 506
PflMI	CCANNNNNTGG	2 cut(s)	533, 634
PkrI	GCNGC	2 cut(s)	748, 795
PmaCI	CACGTG	1 cut(s)	137
PmlI	CACGTG	1 cut(s)	137
Ppu21I	YACGTR	1 cut(s)	137
PpuMI	RGGWCCY	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	3 cut(s)	334, 394, 717
PspCI	CACGTG	1 cut(s)	137
PspGI	CCWGG	3 cut(s)	334, 394, 717
PspN4I	GGNNCC	2 cut(s)	44, 142
PspPI	GGNCC	3 cut(s)	43, 715, 795
PspPPI	RGGWCCY	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	671
PsuI	RGATCY	1 cut(s)	637
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
RseI	CAYNNNNRTG	1 cut(s)	561
SalI	GTCGAC	1 cut(s)	451
SapI	GCTCTTC	1 cut(s)	176
SaqAI	TTAA	3 cut(s)	84, 164, 435
SatI	GCNGC	2 cut(s)	747, 794
Sau3AI	GATC	3 cut(s)	300, 553, 637
Sau96I	GGNCC	3 cut(s)	43, 715, 795
ScrFI	CCNGG	3 cut(s)	336, 396, 719
SfaNI	GCATC	1 cut(s)	556
SfcI	CTRYAG	1 cut(s)	667
SinI	GGWCC	2 cut(s)	43, 715
SmiMI	CAYNNNNRTG	1 cut(s)	561
SphI	GCATGC	1 cut(s)	660
SsiI	CCGC	5 cut(s)	30, 183, 746, 753, 793
StyD4I	CCNGG	3 cut(s)	334, 394, 717
StyI	CCWWGG	2 cut(s)	122, 708
TaaI	ACNGT	7 cut(s)	39, 218, 249, 433, 457, 475, 766
TaiI	ACGT	4 cut(s)	139, 378, 429, 441
TaqI	TCGA	1 cut(s)	452
TauI	GCSGC	2 cut(s)	749, 796
TfiI	GAWTC	2 cut(s)	151, 506
Tru1I	TTAA	3 cut(s)	84, 164, 435
Tru9I	TTAA	3 cut(s)	84, 164, 435
TscAI	CASTG	2 cut(s)	44, 635
TseFI	GTSAC	3 cut(s)	235, 412, 427
Tsp45I	GTSAC	3 cut(s)	235, 412, 427
TspDTI	ATGAA	6 cut(s)	88, 191, 237, 241, 599, 627
TspGWI	ACGGA	2 cut(s)	81, 311
TspRI	CASTG	2 cut(s)	44, 635
Van91I	CCANNNNNTGG	2 cut(s)	533, 634
VpaK11BI	GGWCC	2 cut(s)	43, 715
XceI	RCATGY	1 cut(s)	660
XmiI	GTMKAC	2 cut(s)	293, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.