Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008409

Physical Location & Seq

Genomic Coordinates Forward (+)

6927024 .. 6932791

Gene Structure 5768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G15900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2985 bp

ATGAAGGCCATGGAGACTATACAGGATCTGATCGAAGAAGCTAAAGTACGAGCCGTATGGTGGTGCTTGTGCATCTTCTCCGTCACCTATTTCTTGACCCATACAAGTATCTATTGGTGGCTGAATTTGCCAATTGCAATCCTCATTTGTGGCGGTGCGCGGTTTTTTTTTAACCATTTTGAGTTCAGATGGAAAGTTCCGGCGACTCCTAGGCAGAGTCAGTTGTCTTATCTTGAGAAGAAGCAGTTGTCTGTGAATGATCCACGTCTTTCTGGTATCCCACCTCCTCCAAGGTGGAAGAAGAAAATAGATTCTCCTGTTGTGGAAGCTGCGATTAATGATTTTATTGACAAGATCCTTAATGATTTCGTGGTGAATTTGTGGTACTCTTTGATTACTCCTGATAAAGAAGCGCCTGAACTTATACGTGCAGTGATCATGGATGCTCTTGGTGAGATTTCAGTTAGGGTGAAAGAGATCAATATTGTTGACTTGTTAACCAGGGATATAGTTGATCTGATAGGTGATCATTTGGAAAGTTTTAGAAGAAACCAAGCTGCTATAGGTACTGATGTGATGAAAACTTTGTCATCTGAGGAGAGAGATGAAAGATTGAAATACCATCTTATGGCTTCTGGGGAACTCTATCCTGCACTCGTGTCACCTGAGAGTGAATACAAGGTTCTTCAGAAAATAGTTGCTGGCATATTATCTGTGGTTCTCAGACCACGAGAAGCTCAGTGCCCTCTTGTTCGAACAATAGCTAGAGAGATTGTTACTTGCTTGGTAATTCAACCTCTTTTGAATTTAGCATGCCCCGAGCGTATCAATGAAGTGTTTGAGATCATTATCAATCTTATTAAAGAAGGAAACTTTGAGCAGTTTACGGCGGAAGAGCAGAATGTAAATTCTGCCCCATTGTCAGCCTTCGATAGTCAAGCAAAAAATATGAATTTGACAAAAGCTATTGAGCAGAAATCACCAAACATAAATGACAGACACCCAGATCTACACGTTCAACAGCACTCTGCTGATTGGGCTCGGTCGCTAGAGGTTGCGACGCAAAGGAGAACAGAGGTTCTTAGACCTGAAAACCTTGAAAACATGTGGACGAAAGGAAGGAACTATCAAAAGAAGGAGTACAAAAAATCTCTGAAAAAGGGTTCTTCTACTGGAGCAAAAGAAAACGCAGTGGCGCAGTTACCCCCTAAAGTGAGCACTGATAAGCAGTCACAAGCACAGATGGCTGAGGAATTTAGTAAATCATCTTTACATGATGGAGGGCACCAGATTTATGAGGCTGATGTTAGAAAGGAATCTCGTTCAGATGGAAATAAAAATAGGCTTAAAAGATCCAATAGTACATCAGATCTTAATCTACGTCCTGAAACGAGTCTAGCACTCTTAGGAGTCAGTGAGGGGCCGCTAATCACAGAATTTTACACCACAGATTTTATCAAGCACAATGATAACTACATAAGTGATAATAAATCCCAAAGCATTGTTCTTCACAAAGAGGGTCAGCACTGCCTGAAGCTCAAATGTCGCGTTCTTGGAGCTTATTTTGAGAAGCAAGGATCAAAATCATTTGCAGTATATTCTATTGCGGTGACAGATGTGGAAAACAAAACTTGGTTTGTTAAGAGAAGATACAGTAATTTTGAGCGATTACATCGTCAACTCAAAGAAATCCCGAACTACAATTTACAGTTGCCTCCCAAGCGTATTTTCTCATCAAGCACCGAAGATGCTTTTGTTCATCGTCGCTGTATTCAGCTGGACAAGTATCTACAAGATCTCTTGTGTATAGCTAATGTTGCTGAACAGCATGAAGTTTGGGATTTTCTAAGCGCAGCCTCTAAGAATTATTCTTTTGGAAAGTCTTCATCAGTGATGAAAACTCTTGCAGTCAATGTTGATGATGCCATGGACGATATTGTACGTCAGTTCAAAGGTGTCTCAGATGGCCTTATGCGCAAGGTTGTAGGATCTCCACTTGATGAACATGATCATGCTCCTACCCGCCACCTCTCCTGGAGTGTAAATGAAATAAGCACTCAGCTCTCTAGGGAAAGCGCAACTGAATCTATGCACAGCAGCATTTCTGATACTGAAGACATCGACAAACTTGGAGAGAACACTCAAGGGGAAGGTAGATTTGATTCAGAAGCCAATGGGTGGCACTCAGATAATGAATTGGACTCTAAGTATGTTCCACCGAGAGTGGTTAGACGTCTTGGAGAGCCTGAGAGTTCGCCCTCAGAGAAGGAAAATGATTTTAAGGCAAAATCTCAAGTTAGGGGGTCCACCGATTTTCAGCATGCTGATCCATTGACAGCTTTAGTCCAAAATCCCCATGGCATACCCGAGTGGATGCCACCCAATGTCAGTGTGCCAATTTTGAACTTAGTTGATAAAGTGTTTCAGTTAAATAGAAGAGGTTGGTTAAGGAGGCAAGTTTTCTGGATATCAAAGCAAATATTACAATTAGTTATGGAAGATGCTGTGGATGACTTGCTCATGAGGGAGATATGTTGGCTGCGGAATGAAGACACAATTGCTCAAGGAATTCGTTGGGCTCAAGATATTCTATGGCCAAATGGTGTATTCTTTACCAGATTGAATGATAGTCAAGAGGCATCAGATGAGACCGACCCTAGTGAAAAAACTTACCAAATGGCAGGCCAACTTGGTGGCATGAAGGTGACTAAACCCAGTTCCTTTGAGCAGCAACTCGAGGCTTTTCGTAGAGCTAGTGAAATAAAAAAATTCCTTTTCGATGGCGCCCCAACAGCCTTAGTGAGTTTGGTAGGGCACAATCAGTACAGGAGATGTGCAAGAGACATTTTCTATTTCACTCAGTCAAACATATGCATAAAGCAACTCACATTTGCAATACTGGAGCTGCTACTCCGATCGGTATTCCCCGAGCTGCAAGATCTTCTAAGAGACATAAGGGAGAATCCGCAAGGTCGGTCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0006605 GO:0006622 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0007041 GO:0008104 GO:0008150 GO:0008289 GO:0008333 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016482 GO:0019898 GO:0031090 GO:0031312 GO:0031313 GO:0031410 GO:0031982 GO:0033036 GO:0033365 GO:0034613 GO:0035091 GO:0042802 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061462 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098805 GO:0098927

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nexin_C PX PXA

Protein Analysis

994

Amino Acids

113.72

Weight (kDa)

6.28

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PXA	PF02194	105 - 281	3e-41	PXA domain
PX	PF00787	541 - 617	2.5e-13	PX domain
Nexin_C	PF08628	815 - 956	7.3e-24	Sorting nexin C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15900
fragaria_vesca	FvH4_2g07180 FvH4_2g07180 FvH4_2g07180 FvH4_2g07180 FvH4_2g07180 FvH4_2g07180
malus_domestica	MD05G1073000.v1.1 MD10G1087600.v1.1
prunus_persica	Prupe.8G113600_v2.0.a1 Prupe.8G113600_v2.0.a1
pyrus_communis	pycom05g06550 pycom10g06990
rosa_chinensis	RchiOBHm_Chr6g0259621
rosa_laevigata	RLG00000014517
rosa_multiflora	Rmu_sc0000536.1_g000017
rosa_roxburghii	Rroxscaffold_7G00206920
rosa_rugosa	Rorug05G0590000
rosa_samantha	Rh6AG106200 Rh6BG100700 Rh6CG095300 Rh6DG089200
rosa_wichuraiana	Rw6G009180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2236
Acc16I	TGCGCA	1 cut(s)	1976
AccB1I	GGYRCC	2 cut(s)	1284, 2783
AccB7I	CCANNNNNTGG	2 cut(s)	628, 2178
AccII	CGCG	2 cut(s)	160, 1548
AciI	CCGC	8 cut(s)	153, 160, 890, 1424, 1607, 2023, 2542, 2966
AclWI	GGATC	7 cut(s)	33, 254, 349, 1347, 1585, 1996, 2321
AcoI	YGGCCR	1 cut(s)	2594
AcsI	RAATTY	9 cut(s)	124, 376, 805, 907, 952, 1253, 1436, 2568, 2768
AcuI	CTGAAG	3 cut(s)	671, 1553, 2133
AcyI	GRCGYC	2 cut(s)	2233, 2784
AfaI	GTAC	7 cut(s)	48, 386, 568, 1142, 1363, 1941, 2825
AfiI	CCNNNNNNNGG	3 cut(s)	60, 628, 2178
AflIII	ACRYGT	2 cut(s)	1012, 1104
AgsI	TTSAA	8 cut(s)	616, 794, 805, 1019, 1100, 1951, 2404, 2623
AjiI	CACGTC	1 cut(s)	266
AjnI	CCWGG	2 cut(s)	500, 2033
AjuI	GAANNNNNNNTTGG	4 cut(s)	1488, 1520, 1712, 1744
Alw21I	GWGCWC	1 cut(s)	1220
Alw26I	GTCTC	5 cut(s)	8, 1963, 2642, 2835, 2943
AlwI	GGATC	7 cut(s)	33, 254, 349, 1347, 1585, 1996, 2321
AlwNI	CAGNNNCTG	1 cut(s)	28
Ama87I	CYCGRG	4 cut(s)	818, 2366, 2735, 2927
AoxI	GGCC	5 cut(s)	6, 1421, 1966, 2594, 2683
ApeKI	GCWGC	8 cut(s)	329, 557, 1853, 2097, 2539, 2728, 2905, 2932
ApoI	RAATTY	9 cut(s)	124, 376, 805, 907, 952, 1253, 1436, 2568, 2768
AseI	ATTAAT	1 cut(s)	336
Asp700I	GAANNNNTTC	1 cut(s)	1882
AspA2I	CCTAGG	1 cut(s)	209
AspLEI	GCGC	7 cut(s)	160, 415, 1198, 1853, 1977, 2078, 2786
AspS9I	GGNCC	2 cut(s)	1421, 2304
AsuHPI	GGTGA	9 cut(s)	76, 385, 464, 481, 536, 654, 972, 1621, 2716
AsuII	TTCGAA	1 cut(s)	754
AvaI	CYCGRG	4 cut(s)	818, 2366, 2735, 2927
AvaII	GGWCC	1 cut(s)	2304
AvrII	CCTAGG	1 cut(s)	209
BaeGI	GKGCMC	3 cut(s)	746, 1287, 2817
BaeI	ACNNNNGTAYC	2 cut(s)	558, 591
BalI	TGGCCA	1 cut(s)	2596
BanI	GGYRCC	2 cut(s)	1284, 2783
BanII	GRGCYC	2 cut(s)	1042, 2581
BarI	GAAGNNNNNNTAC	2 cut(s)	30, 62
BauI	CACGAG	2 cut(s)	656, 729
BbsI	GAAGAC	3 cut(s)	1875, 2121, 2556
Bbv12I	GWGCWC	1 cut(s)	1220
BbvCI	CCTCAGC	1 cut(s)	1248
BbvI	GCAGC	8 cut(s)	316, 544, 1865, 2109, 2526, 2740, 2892, 2919
BccI	CCATC	7 cut(s)	183, 630, 1237, 1271, 1322, 1958, 2774
BceAI	ACGGC	2 cut(s)	38, 903
BciT130I	CCWGG	2 cut(s)	502, 2035
BciVI	GTATCC	1 cut(s)	287
BclI	TGATCA	3 cut(s)	435, 526, 2008
BcoDI	GTCTC	5 cut(s)	8, 1963, 2642, 2835, 2943
BfaI	CTAG	7 cut(s)	210, 765, 1049, 1397, 2067, 2658, 2754
BfmI	CTRYAG	1 cut(s)	561
BfoI	RGCGCY	2 cut(s)	416, 2787
BfuI	GTATCC	1 cut(s)	287
BglII	AGATCT	4 cut(s)	1006, 1369, 1795, 2938
BisI	GCNGC	9 cut(s)	330, 558, 1424, 1854, 2098, 2540, 2729, 2906, 2933
BlnI	CCTAGG	1 cut(s)	209
BlsI	GCNGC	9 cut(s)	331, 559, 1425, 1855, 2099, 2541, 2730, 2907, 2934
Bme1390I	CCNGG	2 cut(s)	502, 2035
Bme18I	GGWCC	1 cut(s)	2304
BmeT110I	CYCGRG	4 cut(s)	818, 2366, 2735, 2927
BmgBI	CACGTC	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	1421, 2304
BmiI	GGNNCC	4 cut(s)	1286, 1422, 2305, 2785
BmrFI	CCNGG	2 cut(s)	502, 2035
BmrI	ACTGGG	1 cut(s)	2709
BmsI	GCATC	7 cut(s)	81, 433, 1738, 1912, 2364, 2491, 2648
BmuI	ACTGGG	1 cut(s)	2709
BpiI	GAAGAC	3 cut(s)	1875, 2121, 2556
BpmI	CTGGAG	3 cut(s)	1194, 2056, 2921
Bpu10I	CCTNAGC	1 cut(s)	1248
Bpu14I	TTCGAA	1 cut(s)	754
BpuEI	CTTGAG	5 cut(s)	254, 2127, 2277, 2547, 2565
BsaAI	YACGTR	1 cut(s)	428
BsaBI	GATNNNNATC	3 cut(s)	848, 1374, 1582
BsaHI	GRCGYC	2 cut(s)	2233, 2784
BsaI	GGTCTC	1 cut(s)	2642
BsaJI	CCNNGG	6 cut(s)	9, 209, 290, 501, 1926, 2356
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 628, 2178
Bse1I	ACTGG	3 cut(s)	1177, 2715, 2904
Bse8I	GATNNNNATC	3 cut(s)	848, 1374, 1582
BseBI	CCWGG	2 cut(s)	502, 2035
BseDI	CCNNGG	6 cut(s)	9, 209, 290, 501, 1926, 2356
BseGI	GGATG	3 cut(s)	448, 2379, 2515
BseJI	GATNNNNATC	3 cut(s)	848, 1374, 1582
BseLI	CCNNNNNNNGG	3 cut(s)	60, 628, 2178
BseNI	ACTGG	3 cut(s)	1177, 2715, 2904
BseRI	GAGGAG	2 cut(s)	276, 611
BseSI	GKGCMC	3 cut(s)	746, 1287, 2817
BseXI	GCAGC	8 cut(s)	316, 544, 1865, 2109, 2526, 2740, 2892, 2919
BsgI	GTGCAG	2 cut(s)	450, 636
Bsh1236I	CGCG	2 cut(s)	160, 1548
Bsh1285I	CGRYCG	2 cut(s)	1046, 2918
BshFI	GGCC	5 cut(s)	8, 1423, 1968, 2596, 2685
BshNI	GGYRCC	2 cut(s)	1284, 2783
BsiEI	CGRYCG	2 cut(s)	1046, 2918
BsiHKAI	GWGCWC	1 cut(s)	1220
BsiHKCI	CYCGRG	4 cut(s)	818, 2366, 2735, 2927
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	3 cut(s)	60, 628, 2178
BsmAI	GTCTC	5 cut(s)	8, 1963, 2642, 2835, 2943
BsnI	GGCC	5 cut(s)	8, 1423, 1968, 2596, 2685
Bso31I	GGTCTC	1 cut(s)	2642
BsoBI	CYCGRG	4 cut(s)	818, 2366, 2735, 2927
Bsp119I	TTCGAA	1 cut(s)	754
Bsp1286I	GDGCHC	6 cut(s)	746, 1042, 1220, 1287, 2581, 2817
Bsp19I	CCATGG	3 cut(s)	9, 1926, 2356
BspACI	CCGC	8 cut(s)	153, 160, 890, 1424, 1607, 2023, 2542, 2966
BspANI	GGCC	5 cut(s)	8, 1423, 1968, 2596, 2685
BspFNI	CGCG	2 cut(s)	160, 1548
BspHI	TCATGA	1 cut(s)	2520
BspLI	GGNNCC	4 cut(s)	1286, 1422, 2305, 2785
BspPI	GGATC	7 cut(s)	33, 254, 349, 1347, 1585, 1996, 2321
BspQI	GCTCTTC	1 cut(s)	888
BspT104I	TTCGAA	1 cut(s)	754
BspT107I	GGYRCC	2 cut(s)	1284, 2783
BspTNI	GGTCTC	1 cut(s)	2642
BsrI	ACTGG	3 cut(s)	1177, 2715, 2904
BssECI	CCNNGG	6 cut(s)	9, 209, 290, 501, 1926, 2356
BssNI	GRCGYC	2 cut(s)	2233, 2784
BssSI	CACGAG	2 cut(s)	656, 729
BssT1I	CCWWGG	5 cut(s)	9, 209, 290, 1926, 2356
Bst2BI	CACGAG	2 cut(s)	656, 729
Bst2UI	CCWGG	2 cut(s)	502, 2035
Bst4CI	ACNGT	2 cut(s)	1655, 1710
Bst6I	CTCTTC	2 cut(s)	888, 2431
BstACI	GRCGYC	2 cut(s)	2233, 2784
BstBAI	YACGTR	1 cut(s)	428
BstBI	TTCGAA	1 cut(s)	754
BstC8I	GCNNGC	4 cut(s)	703, 814, 2322, 2683
BstDSI	CCRYGG	3 cut(s)	9, 1926, 2356
BstF5I	GGATG	3 cut(s)	448, 2379, 2515
BstFNI	CGCG	2 cut(s)	160, 1548
BstH2I	RGCGCY	2 cut(s)	416, 2787
BstHHI	GCGC	7 cut(s)	160, 415, 1198, 1853, 1977, 2078, 2786
BstMAI	GTCTC	5 cut(s)	8, 1963, 2642, 2835, 2943
BstMCI	CGRYCG	2 cut(s)	1046, 2918
BstMWI	GCNNNNNNNGC	7 cut(s)	127, 1037, 1244, 1720, 1817, 1974, 2792
BstNI	CCWGG	2 cut(s)	502, 2035
BstNSI	RCATGY	3 cut(s)	816, 1108, 2324
BstSCI	CCNGG	2 cut(s)	500, 2033
BstSFI	CTRYAG	1 cut(s)	561
BstSLI	GKGCMC	3 cut(s)	746, 1287, 2817
BstUI	CGCG	2 cut(s)	160, 1548
BstV1I	GCAGC	8 cut(s)	316, 544, 1865, 2109, 2526, 2740, 2892, 2919
BstV2I	GAAGAC	3 cut(s)	1875, 2121, 2556
BstX2I	RGATCY	8 cut(s)	25, 354, 1006, 1352, 1369, 1795, 1988, 2938
BstXI	CCANNNNNNTGG	1 cut(s)	2693
BstYI	RGATCY	8 cut(s)	25, 354, 1006, 1352, 1369, 1795, 1988, 2938
BsuI	GTATCC	1 cut(s)	287
BsuRI	GGCC	5 cut(s)	8, 1423, 1968, 2596, 2685
BtgI	CCRYGG	3 cut(s)	9, 1926, 2356
BtrI	CACGTC	1 cut(s)	266
BtsCI	GGATG	3 cut(s)	448, 2379, 2515
BtsI	GCAGTG	3 cut(s)	438, 1197, 1525
BtsIMutI	CAGTG	8 cut(s)	438, 746, 1197, 1218, 1420, 1525, 1896, 2395
Cac8I	GCNNGC	4 cut(s)	703, 814, 2322, 2683
CaiI	CAGNNNCTG	1 cut(s)	28
CciI	TCATGA	1 cut(s)	2520
CfoI	GCGC	7 cut(s)	160, 415, 1198, 1853, 1977, 2078, 2786
Cfr13I	GGNCC	2 cut(s)	1421, 2304
CseI	GACGC	1 cut(s)	1069
Csp6I	GTAC	7 cut(s)	47, 385, 567, 1141, 1362, 1940, 2824
CviQI	GTAC	7 cut(s)	47, 385, 567, 1141, 1362, 1940, 2824
DinI	GGCGCC	1 cut(s)	2785
EaeI	YGGCCR	1 cut(s)	2594
Eam1104I	CTCTTC	2 cut(s)	888, 2431
EarI	CTCTTC	2 cut(s)	888, 2431
EciI	GGCGGA	1 cut(s)	905
Eco130I	CCWWGG	5 cut(s)	9, 209, 290, 1926, 2356
Eco24I	GRGCYC	2 cut(s)	1042, 2581
Eco31I	GGTCTC	1 cut(s)	2642
Eco32I	GATATC	1 cut(s)	2469
Eco47I	GGWCC	1 cut(s)	2304
Eco57I	CTGAAG	3 cut(s)	671, 1553, 2133
Eco88I	CYCGRG	4 cut(s)	818, 2366, 2735, 2927
EcoRI	GAATTC	1 cut(s)	2568
EcoRII	CCWGG	2 cut(s)	500, 2033
EcoRV	GATATC	1 cut(s)	2469
EcoT14I	CCWWGG	5 cut(s)	9, 209, 290, 1926, 2356
EcoT22I	ATGCAT	1 cut(s)	2876
EcoT38I	GRGCYC	2 cut(s)	1042, 2581
EgeI	GGCGCC	1 cut(s)	2785
EheI	GGCGCC	1 cut(s)	2785
ErhI	CCWWGG	5 cut(s)	9, 209, 290, 1926, 2356
FauI	CCCGC	1 cut(s)	2030
FauNDI	CATATG	1 cut(s)	2870
FbaI	TGATCA	3 cut(s)	435, 526, 2008
Fnu4HI	GCNGC	9 cut(s)	330, 558, 1424, 1854, 2098, 2540, 2729, 2906, 2933
FokI	GGATG	3 cut(s)	455, 2386, 2522
FriOI	GRGCYC	2 cut(s)	1042, 2581
Fsp4HI	GCNGC	9 cut(s)	330, 558, 1424, 1854, 2098, 2540, 2729, 2906, 2933
FspBI	CTAG	7 cut(s)	210, 765, 1049, 1397, 2067, 2658, 2754
FspI	TGCGCA	1 cut(s)	1976
GlaI	GCGC	7 cut(s)	159, 414, 1197, 1852, 1976, 2077, 2785
GluI	GCNGC	9 cut(s)	330, 558, 1424, 1854, 2098, 2540, 2729, 2906, 2933
GsuI	CTGGAG	3 cut(s)	1194, 2056, 2921
HaeII	RGCGCY	2 cut(s)	416, 2787
HaeIII	GGCC	5 cut(s)	8, 1423, 1968, 2596, 2685
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	1 cut(s)	1069
HhaI	GCGC	7 cut(s)	160, 415, 1198, 1853, 1977, 2078, 2786
Hin1I	GRCGYC	2 cut(s)	2233, 2784
Hin6I	GCGC	7 cut(s)	158, 413, 1196, 1851, 1975, 2076, 2784
HinP1I	GCGC	7 cut(s)	158, 413, 1196, 1851, 1975, 2076, 2784
HincII	GTYRAC	3 cut(s)	490, 498, 1679
HindII	GTYRAC	3 cut(s)	490, 498, 1679
HpaI	GTTAAC	1 cut(s)	498
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	9 cut(s)	76, 385, 464, 481, 536, 654, 972, 1621, 2716
Hpy166II	GTNNAC	6 cut(s)	490, 498, 885, 1110, 1679, 2307
Hpy188III	TCNNGA	9 cut(s)	94, 233, 401, 1385, 1693, 2464, 2521, 2582, 2633
Hpy8I	GTNNAC	6 cut(s)	490, 498, 885, 1110, 1679, 2307
Hpy99I	CGWCG	2 cut(s)	1063, 1767
HpyAV	CCTTC	7 cut(s)	860, 937, 1113, 1129, 2144, 2260, 2695
HpyCH4III	ACNGT	2 cut(s)	1655, 1710
HpyCH4IV	ACGT	6 cut(s)	265, 427, 1014, 1381, 1942, 2233
HpyF10VI	GCNNNNNNNGC	7 cut(s)	127, 1037, 1244, 1720, 1817, 1974, 2792
HpySE526I	ACGT	6 cut(s)	265, 427, 1014, 1381, 1942, 2233
Hsp92I	GRCGYC	2 cut(s)	2233, 2784
HspAI	GCGC	7 cut(s)	158, 413, 1196, 1851, 1975, 2076, 2784
KasI	GGCGCC	1 cut(s)	2783
Ksp22I	TGATCA	3 cut(s)	435, 526, 2008
KspAI	GTTAAC	1 cut(s)	498
LguI	GCTCTTC	1 cut(s)	888
LmnI	GCTCC	4 cut(s)	1175, 1556, 2020, 2902
Lsp1109I	GCAGC	8 cut(s)	316, 544, 1865, 2109, 2526, 2740, 2892, 2919
LweI	GCATC	7 cut(s)	81, 433, 1738, 1912, 2364, 2491, 2648
MaeI	CTAG	7 cut(s)	210, 765, 1049, 1397, 2067, 2658, 2754
MaeII	ACGT	6 cut(s)	265, 427, 1014, 1381, 1942, 2233
MaeIII	GTNAC	7 cut(s)	82, 660, 775, 1200, 1230, 1609, 2704
MfeI	CAATTG	2 cut(s)	132, 2556
MflI	RGATCY	8 cut(s)	25, 354, 1006, 1352, 1369, 1795, 1988, 2938
MhlI	GDGCHC	6 cut(s)	746, 1042, 1220, 1287, 2581, 2817
MlsI	TGGCCA	1 cut(s)	2596
MluNI	TGGCCA	1 cut(s)	2596
Mly113I	GGCGCC	1 cut(s)	2784
MlyI	GAGTC	5 cut(s)	199, 226, 1402, 1419, 2195
Mox20I	TGGCCA	1 cut(s)	2596
Mph1103I	ATGCAT	1 cut(s)	2876
MroXI	GAANNNNTTC	1 cut(s)	1882
MscI	TGGCCA	1 cut(s)	2596
MslI	CAYNNNNRTG	2 cut(s)	2010, 2702
Msp20I	TGGCCA	1 cut(s)	2596
MspA1I	CMGCKG	1 cut(s)	1777
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	502, 2035
MunI	CAATTG	2 cut(s)	132, 2556
MvaI	CCWGG	2 cut(s)	502, 2035
MvnI	CGCG	2 cut(s)	160, 1548
MwoI	GCNNNNNNNGC	7 cut(s)	127, 1037, 1244, 1720, 1817, 1974, 2792
NarI	GGCGCC	1 cut(s)	2784
NcoI	CCATGG	3 cut(s)	9, 1926, 2356
NdeI	CATATG	1 cut(s)	2870
NlaIV	GGNNCC	4 cut(s)	1286, 1422, 2305, 2785
NmuCI	GTSAC	5 cut(s)	82, 660, 1230, 1609, 2704
NsbI	TGCGCA	1 cut(s)	1976
NsiI	ATGCAT	1 cut(s)	2876
NspI	RCATGY	3 cut(s)	816, 1108, 2324
NspV	TTCGAA	1 cut(s)	754
PaeI	GCATGC	2 cut(s)	816, 2324
PaeR7I	CTCGAG	1 cut(s)	2735
PagI	TCATGA	1 cut(s)	2520
PciI	ACATGT	1 cut(s)	1104
PciSI	GCTCTTC	1 cut(s)	888
PdmI	GAANNNNTTC	1 cut(s)	1882
PfeI	GAWTC	5 cut(s)	311, 1316, 2084, 2162, 2962
PflMI	CCANNNNNTGG	2 cut(s)	628, 2178
PfoI	TCCNGGA	1 cut(s)	2033
PkrI	GCNGC	9 cut(s)	331, 559, 1425, 1855, 2099, 2541, 2730, 2907, 2934
Ple19I	CGATCG	1 cut(s)	2918
PleI	GAGTC	5 cut(s)	199, 225, 1401, 1418, 2195
PluTI	GGCGCC	1 cut(s)	2787
PpsI	GAGTC	5 cut(s)	199, 225, 1401, 1418, 2195
Ppu21I	YACGTR	1 cut(s)	428
PscI	ACATGT	1 cut(s)	1104
PshBI	ATTAAT	1 cut(s)	336
Psp6I	CCWGG	2 cut(s)	500, 2033
PspGI	CCWGG	2 cut(s)	500, 2033
PspN4I	GGNNCC	4 cut(s)	1286, 1422, 2305, 2785
PspPI	GGNCC	2 cut(s)	1421, 2304
PspXI	VCTCGAGB	1 cut(s)	2735
PstNI	CAGNNNCTG	1 cut(s)	28
PsuI	RGATCY	8 cut(s)	25, 354, 1006, 1352, 1369, 1795, 1988, 2938
PvuI	CGATCG	1 cut(s)	2918
PvuII	CAGCTG	1 cut(s)	1777
RsaI	GTAC	7 cut(s)	48, 386, 568, 1142, 1363, 1941, 2825
RsaNI	GTAC	7 cut(s)	47, 385, 567, 1141, 1362, 1940, 2824
RseI	CAYNNNNRTG	2 cut(s)	2010, 2702
SapI	GCTCTTC	1 cut(s)	888
SatI	GCNGC	9 cut(s)	330, 558, 1424, 1854, 2098, 2540, 2729, 2906, 2933
Sau96I	GGNCC	2 cut(s)	1421, 2304
SchI	GAGTC	5 cut(s)	199, 226, 1402, 1419, 2195
ScrFI	CCNGG	2 cut(s)	502, 2035
SduI	GDGCHC	6 cut(s)	746, 1042, 1220, 1287, 2581, 2817
SfaNI	GCATC	7 cut(s)	81, 433, 1738, 1912, 2364, 2491, 2648
SfcI	CTRYAG	1 cut(s)	561
SfoI	GGCGCC	1 cut(s)	2785
Sfr274I	CTCGAG	1 cut(s)	2735
SfuI	TTCGAA	1 cut(s)	754
SinI	GGWCC	1 cut(s)	2304
SlaI	CTCGAG	1 cut(s)	2735
SmiMI	CAYNNNNRTG	2 cut(s)	2010, 2702
SmlI	CTYRAG	6 cut(s)	233, 2142, 2292, 2562, 2580, 2735
SmoI	CTYRAG	6 cut(s)	233, 2142, 2292, 2562, 2580, 2735
SphI	GCATGC	2 cut(s)	816, 2324
SsiI	CCGC	8 cut(s)	153, 160, 890, 1424, 1607, 2023, 2542, 2966
SspDI	GGCGCC	1 cut(s)	2783
SspI	AATATT	2 cut(s)	484, 2481
SspMI	CTAG	7 cut(s)	210, 765, 1049, 1397, 2067, 2658, 2754
StyD4I	CCNGG	2 cut(s)	500, 2033
StyI	CCWWGG	5 cut(s)	9, 209, 290, 1926, 2356
TaaI	ACNGT	2 cut(s)	1655, 1710
TaiI	ACGT	6 cut(s)	268, 430, 1017, 1384, 1945, 2236
TaqI	TCGA	6 cut(s)	33, 754, 930, 2121, 2736, 2778
TaqII	GACCGA	3 cut(s)	1032, 2666, 2964
TatI	WGTACW	3 cut(s)	1140, 1361, 2823
TauI	GCSGC	1 cut(s)	1426
TfiI	GAWTC	5 cut(s)	311, 1316, 2084, 2162, 2962
TscAI	CASTG	8 cut(s)	438, 746, 1197, 1225, 1420, 1532, 1896, 2395
TseFI	GTSAC	5 cut(s)	82, 660, 1230, 1609, 2704
TseI	GCWGC	8 cut(s)	329, 557, 1853, 2097, 2539, 2728, 2905, 2932
Tsp45I	GTSAC	5 cut(s)	82, 660, 1230, 1609, 2704
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	8 cut(s)	438, 746, 1197, 1225, 1420, 1532, 1896, 2395
Van91I	CCANNNNNTGG	2 cut(s)	628, 2178
VpaK11BI	GGWCC	1 cut(s)	2304
VspI	ATTAAT	1 cut(s)	336
XapI	RAATTY	9 cut(s)	124, 376, 805, 907, 952, 1253, 1436, 2568, 2768
XceI	RCATGY	3 cut(s)	816, 1108, 2324
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2354
XhoI	CTCGAG	1 cut(s)	2735
XmaJI	CCTAGG	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	1882
XspI	CTAG	7 cut(s)	210, 765, 1049, 1397, 2067, 2658, 2754
ZraI	GACGTC	1 cut(s)	2234
Zsp2I	ATGCAT	1 cut(s)	2876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.