Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008409

Physical Location & Seq

Genomic Coordinates Forward (+)

10522869 .. 10532075

Gene Structure 9207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG095300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3087 bp

ATGAAGAGGGCGATAAGGAGCGTAGAGGATCTGATCGAGGAGGTTCAGCTTCGATTCGTTTGGTGGGCGCTGTTTGTCTTCGCTGTTTCCTACTTCTTGACGCATACAAGCAAATCAATGTGGATGAATCTGCCCATAGCAATCTTACTTGTCGCGGTATTACGCATGCTATTAAATGAGGTGGAATTTCACTGGAAGGTTCATAAGCCTGTTCGTCCGAAATCATATTTGTCTCATTTGGAGAAGAAACAGTTGTCTGTGAACGACGCACGCCTTTCTACTTCGCTGCCACCGCCAAAATGGAAAAGGAAAATTGGTTCTCCGATCGTAGAGGATGCAATGAGAGATTTCATTGACAAAATTTTGAAGGATTTTGTGATTGATTTATGGTATTCGGATATAACACCGGACAAGGAGGCTCCGGAGCAGATACGCGCAATTATCATGGATGCTCTTGGTGAAGTATCAGGAAGAGCTAAAGAGATAAACCTTGTTGATTTGCTCACAAGGGATATAATAGATTTAATAGCAGAACATTTAGAGCTTTTCAGAAGAAACCAAGCTGCTATAGGTGTTGATGTTATGAAAACATTGTCTTCAGAGGAGAGAGATGAAAGGTTGAAACATCATCTTATGACTTCAAAGGAGCTCCATCCTGCGTTGATATCACCTGAGAGTGAGTACAAGTTTCTTCAGCGGGTAATGGGTGGAGTGATAGCGGTGGTGCTCAGACCACGAGAAGCTCAATGTCCAGTGGTTCGATCCATTGCCAGAGAACTATTAACAAGCTTGGTAATTGAACCTGTTATGAATTTCGCAAGCCCTGGGTACATCAATGAGTTGATTGAATATGTTTTGGAAATTGTTAAAGATTATATCTTTAAAGAGGCAGATGGGGACCAGTCTACTGCAGGGGGCGTACATGATCATGATTCTCCGCTGAGGAAATATGCTACCTTTAATCAGAGGACTGATACCTTGGCTAAAATTGAAAATCAGGGAGAAGCATCCTCGGACTATAACACATTCCAGGAAGATCCTTTGCAGTCGCAGCCTGCTGTTTGGGCACGAGGGTTGGAGGCTGCGACACAGAGAAGGACTGAAGTTCTTACTCCTGAAAATCTAGAAAACATGTGGACAAAAGGAAGAAACTATAAAAAGAAAGAACACAAGAAAAAAATAACAGGAGTTCAGGAACCAGTACCAAAGGGTTCAGGAGCGCAAAGTGCTGTACCTGCAAAAAAGTTGGGGAATGAAATGCTAGCTAACAGGCATGATATTTCTACAGGAGAGGAAGATAGATCTATTGTAAATCTAACCCAGGGGGCAAGTTTTGACACCCATTTTAGTGATGCGACTAAAAAGGAGTTGCGGTTCTCTTCAGATGTCAACAAGGAATCAATTTCTAAGGAAGGGCATCTTGTTGATGAGTCGGATGACGATAGAGATCTTGCTGCTAATGGAGTTAAAAGTAGCCTTAAACGATCAAATAGCACTTCTGCTTTGAAAATCCAACCTGATGCAAAAAAAGCTTCGACACAAGGTGGAGGTTCCATCATTTCAGAGTTCTATAGTCCTGAATTTGGCAGGCATGTAGAAGGGCATATTGGTAAGAGTGCCTCAGATATGGTAGTCCGCAGTGTGGGACAAGTTCCCAAGCTCAGGTGTCGGGTTATGGGAGCATACTTTGAGAAACTTGGGTCAAAATCTTTTGCAGTTTATTCAATTGCAGTGACAGATGCAGAAAACAGAACTTGGTTTGTGAAACGAAGATATAGGAATTTTGAGCGACTACACCGCCATCTCAAAGAAATTCCAAATTACACCTTACATTTGCCCCCCAAAAGGATATTCTCATCAAGCACAGAGGATGCTTTTGTTCATCAGCGATGTATCCAGCTTGACAGATATCTCCAGGATCTTTTGTCAATAGCGAATGTTGCTGAACAGCATGAAGTTTGGGATTTTTTAAGTGCTACCTCAAAGAATTACTCATTTGGAAAATCTCCCTCAGTGATGAGAACTCTTGCAGTGAATGTGGATGATGCTGTGGACGATATTGTTCGCCAGTTCAAAGGGGTTTCAGATGGCTTAATGCGTGCCGTTGTTGGTCCATCCACTTCTGAGGGCTCATCTTCAATTCCTGTGTTGAACTTGTCCTGGAATGCCGAAGAGACAAGTGAAAATGTTTCTAGGCAAAATACAGGGGAAACACTGAGTAGCTTTTCTGATAATGAGCCTGCCGAAAATGATCAAAGTTGTGACCCTGTGGAAGTCAGATCTAATGCGCAGGATAGTGGGTGGCATTCAGACAATGAATTGGACTTTAAGGGCGGACAACCTTGGATTAAACATTCGAGAAGCATAGGGTTGCAGAAGAAAGTGGTTGTGGATTCTGGGGGTGGCAATGATGTCTTTCCTAGAGCAATTGGTCCAGTAACCTTCAATCCTTTGGAACTGGAGGATCCAGTTGGAATGCCACCTGAGTGGACTCCACCCAATGTTAGTGTACCTCTGTTGAATCTAGTGGACAAGGTATTTCAGCTTAAGAGAAGGGGATGGCTAAGAAGACAAGTGTTTTGGATGTCAAAACAAATACTACAGTTGATGATGGAAGACGCTATTGATGACTGGCTCTTGAGGCATATTCAATTGCTTCGGAGGGAGGATATTATAGCTTCAGGAATTCGATGGCTTCAAGATGTTCTATGGCCCAATGGCACATTCTTCCTTAAGGTTGGTAATGCTAAAGACGATCAAAACTCTCTTCCAACTACGAACCAATTTGGTGGCAGTAAGGTTGGTAAACCAGGTTCTTTTGAGCAGCAGCTTGAGGCTGCTCGGAGAGCTAGTGATCTGAAGAAACTGCTCTTTGATGGAGCTCCAACAGCCTTAGTCAGCTTAGTCGGATATAAGCAGTACAGACGTTGTGCAAGAGATATTTATTATTTCACTCAGTCTACTATATGCGTGAAGCAACTTGCATATGCAATACTTGAGTTATGTCTTGTATCAATATTCCCTGAGCTACGGGATCTTATTGTTGATATTCACGAGAAGACGCACATCGATCAAACTGTACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0006605 GO:0006622 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0007041 GO:0008104 GO:0008150 GO:0008289 GO:0008333 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016482 GO:0019898 GO:0031090 GO:0031312 GO:0031313 GO:0031410 GO:0031982 GO:0033036 GO:0033365 GO:0034613 GO:0035091 GO:0042802 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061462 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098805 GO:0098927

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nexin_C PX PXA

Protein Analysis

1028

Amino Acids

116.28

Weight (kDa)

6.55

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PXA	PF02194	107 - 285	4e-42	PXA domain
PX	PF00787	582 - 658	1.4e-13	PX domain
Nexin_C	PF08628	854 - 987	1.1e-23	Sorting nexin C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15900
fragaria_vesca	FvH4_2g07180 FvH4_2g07180 FvH4_2g07180 FvH4_2g07180 FvH4_2g07180 FvH4_2g07180
malus_domestica	MD05G1073000.v1.1 MD10G1087600.v1.1
prunus_persica	Prupe.8G113600_v2.0.a1 Prupe.8G113600_v2.0.a1
pyrus_communis	pycom05g06550 pycom10g06990
rosa_chinensis	RchiOBHm_Chr6g0259621
rosa_laevigata	RLG00000014517
rosa_multiflora	Rmu_sc0000536.1_g000017
rosa_roxburghii	Rroxscaffold_7G00206920
rosa_rugosa	Rorug05G0590000
rosa_samantha	Rh6AG106200 Rh6BG100700 Rh6CG095300 Rh6DG089200
rosa_wichuraiana	Rw6G009180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2289
Acc36I	ACCTGC	1 cut(s)	1243
AccI	GTMKAC	2 cut(s)	905, 2960
AccII	CGCG	2 cut(s)	155, 435
AccIII	TCCGGA	1 cut(s)	421
AciI	CCGC	9 cut(s)	155, 293, 697, 719, 938, 1372, 1636, 1798, 2334
AclWI	GGATC	7 cut(s)	36, 756, 1031, 1926, 2459, 2472, 3042
AcsI	RAATTY	7 cut(s)	185, 360, 811, 1580, 1780, 1812, 2685
AcuI	CTGAAG	6 cut(s)	582, 677, 1122, 1365, 2664, 2879
AdeI	CACNNNGTG	1 cut(s)	1544
AfaI	GTAC	8 cut(s)	683, 830, 921, 1203, 1233, 2511, 2921, 3081
AfiI	CCNNNNNNNGG	4 cut(s)	1583, 1642, 1662, 1845
AflII	CTTAAG	2 cut(s)	2546, 2732
AflIII	ACRYGT	1 cut(s)	1131
AjnI	CCWGG	6 cut(s)	823, 1029, 1320, 1914, 2159, 2809
AjuI	GAANNNNNNNTTGG	6 cut(s)	1590, 1622, 1835, 1867, 2708, 2740
AleI	CACNNNNGTG	1 cut(s)	2485
AloI	GAACNNNNNNTCC	4 cut(s)	301, 333, 1358, 1390
Alw21I	GWGCWC	3 cut(s)	651, 729, 2884
Alw26I	GTCTC	2 cut(s)	237, 2168
AlwI	GGATC	7 cut(s)	36, 756, 1031, 1926, 2459, 2472, 3042
Aor13HI	TCCGGA	1 cut(s)	421
AoxI	GGCC	1 cut(s)	2711
ApeKI	GCWGC	8 cut(s)	286, 563, 1051, 1082, 1454, 2824, 2827, 2837
ApoI	RAATTY	7 cut(s)	185, 360, 811, 1580, 1780, 1812, 2685
ArsI	GACNNNNNNTTYG	2 cut(s)	2562, 2594
AspLEI	GCGC	4 cut(s)	70, 437, 1222, 2290
AspS9I	GGNCC	4 cut(s)	898, 2111, 2432, 2712
AsuHPI	GGTGA	2 cut(s)	470, 660
AsuNHI	GCTAGC	1 cut(s)	1261
AvaII	GGWCC	3 cut(s)	898, 2111, 2432
BaeGI	GKGCMC	1 cut(s)	1069
BamHI	GGATCC	1 cut(s)	2464
BanII	GRGCYC	3 cut(s)	651, 2132, 2884
BauI	CACGAG	3 cut(s)	735, 1068, 3053
BbsI	GAAGAC	5 cut(s)	70, 588, 2575, 2622, 3065
Bbv12I	GWGCWC	3 cut(s)	651, 729, 2884
BbvCI	CCTCAGC	1 cut(s)	941
BbvI	GCAGC	8 cut(s)	273, 550, 1063, 1069, 1441, 2824, 2836, 2839
BceAI	ACGGC	1 cut(s)	2087
BciT130I	CCWGG	6 cut(s)	825, 1031, 1322, 1916, 2161, 2811
BciVI	GTATCC	1 cut(s)	1904
BclI	TGATCA	2 cut(s)	925, 2251
BcoDI	GTCTC	2 cut(s)	237, 2168
BfaI	CTAG	6 cut(s)	1124, 1262, 2193, 2421, 2525, 2850
BfmI	CTRYAG	5 cut(s)	567, 909, 1284, 1570, 2600
BfoI	RGCGCY	1 cut(s)	71
BfrI	CTTAAG	2 cut(s)	2546, 2732
BfuAI	ACCTGC	1 cut(s)	1243
BfuI	GTATCC	1 cut(s)	1904
BglII	AGATCT	3 cut(s)	1301, 1447, 2279
BisI	GCNGC	8 cut(s)	287, 564, 1052, 1083, 1455, 2825, 2828, 2838
BlsI	GCNGC	8 cut(s)	288, 565, 1053, 1084, 1456, 2826, 2829, 2839
Bme1390I	CCNGG	6 cut(s)	825, 1031, 1322, 1916, 2161, 2811
Bme18I	GGWCC	3 cut(s)	898, 2111, 2432
BmgT120I	GGNCC	4 cut(s)	898, 2111, 2432, 2712
BmiI	GGNNCC	5 cut(s)	420, 899, 1197, 1552, 2466
BmrFI	CCNGG	6 cut(s)	825, 1031, 1322, 1916, 2161, 2811
BmsI	GCATC	9 cut(s)	325, 439, 1016, 1342, 1426, 1510, 1729, 1861, 2035
BmtI	GCTAGC	1 cut(s)	1265
BpiI	GAAGAC	5 cut(s)	70, 588, 2575, 2622, 3065
BpmI	CTGGAG	2 cut(s)	1898, 2480
Bpu10I	CCTNAGC	3 cut(s)	941, 1661, 3024
BpuEI	CTTGAG	3 cut(s)	2659, 2852, 3017
Bsa29I	ATCGAT	1 cut(s)	3069
BsaBI	GATNNNNATC	1 cut(s)	1446
BsaJI	CCNNGG	7 cut(s)	823, 824, 978, 1011, 1320, 1321, 2342
BsaWI	WCCGGW	2 cut(s)	406, 421
BsaXI	ACNNNNNCTCC	4 cut(s)	1358, 1388, 2836, 2866
Bsc4I	CCNNNNNNNGG	4 cut(s)	1583, 1642, 1662, 1845
Bse1I	ACTGG	9 cut(s)	197, 752, 901, 1199, 2068, 2435, 2463, 2468, 2636
Bse3DI	GCAATG	3 cut(s)	345, 765, 2413
Bse8I	GATNNNNATC	1 cut(s)	1446
BseAI	TCCGGA	1 cut(s)	421
BseBI	CCWGG	6 cut(s)	825, 1031, 1322, 1916, 2161, 2811
BseCI	ATCGAT	1 cut(s)	3069
BseDI	CCNNGG	7 cut(s)	823, 824, 978, 1011, 1320, 1321, 2342
BseJI	GATNNNNATC	1 cut(s)	1446
BseLI	CCNNNNNNNGG	4 cut(s)	1583, 1642, 1662, 1845
BseMI	GCAATG	3 cut(s)	345, 765, 2413
BseNI	ACTGG	9 cut(s)	197, 752, 901, 1199, 2068, 2435, 2463, 2468, 2636
BseRI	GAGGAG	2 cut(s)	53, 617
BseSI	GKGCMC	1 cut(s)	1069
BseXI	GCAGC	8 cut(s)	273, 550, 1063, 1069, 1441, 2824, 2836, 2839
Bsh1236I	CGCG	2 cut(s)	155, 435
Bsh1285I	CGRYCG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	2713
BshVI	ATCGAT	1 cut(s)	3069
BsiEI	CGRYCG	1 cut(s)	327
BsiHKAI	GWGCWC	3 cut(s)	651, 729, 2884
BsiSI	CCGG	2 cut(s)	407, 422
BslFI	GGGAC	2 cut(s)	911, 1659
BslI	CCNNNNNNNGG	4 cut(s)	1583, 1642, 1662, 1845
BsmAI	GTCTC	2 cut(s)	237, 2168
BsmFI	GGGAC	2 cut(s)	911, 1659
BsmI	GAATGC	3 cut(s)	2170, 2305, 2481
BsnI	GGCC	1 cut(s)	2713
Bsp1286I	GDGCHC	5 cut(s)	651, 729, 1069, 2132, 2884
Bsp13I	TCCGGA	1 cut(s)	421
BspACI	CCGC	9 cut(s)	155, 293, 697, 719, 938, 1372, 1636, 1798, 2334
BspANI	GGCC	1 cut(s)	2713
BspDI	ATCGAT	1 cut(s)	3069
BspEI	TCCGGA	1 cut(s)	421
BspFNI	CGCG	2 cut(s)	155, 435
BspHI	TCATGA	1 cut(s)	928
BspLI	GGNNCC	5 cut(s)	420, 899, 1197, 1552, 2466
BspMAI	CTGCAG	1 cut(s)	913
BspMI	ACCTGC	1 cut(s)	1243
BspOI	GCTAGC	1 cut(s)	1265
BspPI	GGATC	7 cut(s)	36, 756, 1031, 1926, 2459, 2472, 3042
BspQI	GCTCTTC	1 cut(s)	466
BspTI	CTTAAG	2 cut(s)	2546, 2732
BsrDI	GCAATG	3 cut(s)	345, 765, 2413
BsrI	ACTGG	9 cut(s)	197, 752, 901, 1199, 2068, 2435, 2463, 2468, 2636
BssECI	CCNNGG	7 cut(s)	823, 824, 978, 1011, 1320, 1321, 2342
BssSI	CACGAG	3 cut(s)	735, 1068, 3053
BssT1I	CCWWGG	2 cut(s)	978, 2342
Bst2BI	CACGAG	3 cut(s)	735, 1068, 3053
Bst2UI	CCWGG	6 cut(s)	825, 1031, 1322, 1916, 2161, 2811
Bst4CI	ACNGT	4 cut(s)	252, 2604, 3079, 3084
Bst6I	CTCTTC	4 cut(s)	466, 1384, 2166, 2772
BstAFI	CTTAAG	2 cut(s)	2546, 2732
BstC8I	GCNNGC	8 cut(s)	167, 271, 820, 1056, 1263, 1589, 2100, 2241
BstFNI	CGCG	2 cut(s)	155, 435
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	4 cut(s)	70, 437, 1222, 2290
BstMAI	GTCTC	2 cut(s)	237, 2168
BstMCI	CGRYCG	1 cut(s)	327
BstNI	CCWGG	6 cut(s)	825, 1031, 1322, 1916, 2161, 2811
BstNSI	RCATGY	3 cut(s)	169, 1135, 1595
BstSCI	CCNGG	6 cut(s)	823, 1029, 1320, 1914, 2159, 2809
BstSFI	CTRYAG	5 cut(s)	567, 909, 1284, 1570, 2600
BstSLI	GKGCMC	1 cut(s)	1069
BstUI	CGCG	2 cut(s)	155, 435
BstV1I	GCAGC	8 cut(s)	273, 550, 1063, 1069, 1441, 2824, 2836, 2839
BstV2I	GAAGAC	5 cut(s)	70, 588, 2575, 2622, 3065
BstX2I	RGATCY	8 cut(s)	28, 1036, 1301, 1447, 1918, 2279, 2464, 3034
BstXI	CCANNNNNNTGG	2 cut(s)	2487, 2789
BstYI	RGATCY	8 cut(s)	28, 1036, 1301, 1447, 1918, 2279, 2464, 3034
Bsu15I	ATCGAT	1 cut(s)	3069
BsuI	GTATCC	1 cut(s)	1904
BsuRI	GGCC	1 cut(s)	2713
BsuTUI	ATCGAT	1 cut(s)	3069
BtgZI	GCGATG	1 cut(s)	1903
BtsI	GCAGTG	3 cut(s)	1645, 1737, 2037
BtsIMutI	CAGTG	7 cut(s)	190, 759, 1645, 1737, 2019, 2037, 2213
BveI	ACCTGC	1 cut(s)	1243
Cac8I	GCNNGC	8 cut(s)	167, 271, 820, 1056, 1263, 1589, 2100, 2241
CciI	TCATGA	1 cut(s)	928
CfoI	GCGC	4 cut(s)	70, 437, 1222, 2290
Cfr13I	GGNCC	4 cut(s)	898, 2111, 2432, 2712
ClaI	ATCGAT	1 cut(s)	3069
CseI	GACGC	4 cut(s)	109, 275, 2627, 3070
CsiI	ACCWGGT	1 cut(s)	2809
Csp6I	GTAC	8 cut(s)	682, 829, 920, 1202, 1232, 2510, 2920, 3080
CviAII	CATG	8 cut(s)	166, 445, 923, 929, 1132, 1274, 1592, 1952
CviQI	GTAC	8 cut(s)	682, 829, 920, 1202, 1232, 2510, 2920, 3080
DraI	TTTAAA	1 cut(s)	883
DraIII	CACNNNGTG	1 cut(s)	1544
Eam1104I	CTCTTC	4 cut(s)	466, 1384, 2166, 2772
EarI	CTCTTC	4 cut(s)	466, 1384, 2166, 2772
EciI	GGCGGA	1 cut(s)	2349
Ecl136II	GAGCTC	2 cut(s)	649, 2882
Eco130I	CCWWGG	2 cut(s)	978, 2342
Eco24I	GRGCYC	3 cut(s)	651, 2132, 2884
Eco32I	GATATC	2 cut(s)	666, 1910
Eco47I	GGWCC	3 cut(s)	898, 2111, 2432
Eco53kI	GAGCTC	2 cut(s)	649, 2882
Eco57I	CTGAAG	6 cut(s)	582, 677, 1122, 1365, 2664, 2879
EcoICRI	GAGCTC	2 cut(s)	649, 2882
EcoRI	GAATTC	1 cut(s)	2685
EcoRII	CCWGG	6 cut(s)	823, 1029, 1320, 1914, 2159, 2809
EcoRV	GATATC	2 cut(s)	666, 1910
EcoT14I	CCWWGG	2 cut(s)	978, 2342
EcoT38I	GRGCYC	3 cut(s)	651, 2132, 2884
ErhI	CCWWGG	2 cut(s)	978, 2342
FaeI	CATG	8 cut(s)	169, 448, 926, 932, 1135, 1277, 1595, 1955
FalI	AAGNNNNNCTT	2 cut(s)	1404, 1436
FaqI	GGGAC	2 cut(s)	911, 1659
FatI	CATG	8 cut(s)	165, 444, 922, 928, 1131, 1273, 1591, 1951
FauI	CCCGC	1 cut(s)	690
FauNDI	CATATG	1 cut(s)	2986
FbaI	TGATCA	2 cut(s)	925, 2251
FblI	GTMKAC	2 cut(s)	905, 2960
Fnu4HI	GCNGC	8 cut(s)	287, 564, 1052, 1083, 1455, 2825, 2828, 2838
FriOI	GRGCYC	3 cut(s)	651, 2132, 2884
Fsp4HI	GCNGC	8 cut(s)	287, 564, 1052, 1083, 1455, 2825, 2828, 2838
FspBI	CTAG	6 cut(s)	1124, 1262, 2193, 2421, 2525, 2850
FspI	TGCGCA	1 cut(s)	2289
GlaI	GCGC	4 cut(s)	69, 436, 1221, 2289
GluI	GCNGC	8 cut(s)	287, 564, 1052, 1083, 1455, 2825, 2828, 2838
GsuI	CTGGAG	2 cut(s)	1898, 2480
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	2713
HapII	CCGG	2 cut(s)	407, 422
HgaI	GACGC	4 cut(s)	109, 275, 2627, 3070
HhaI	GCGC	4 cut(s)	70, 437, 1222, 2290
Hin1II	CATG	8 cut(s)	169, 448, 926, 932, 1135, 1277, 1595, 1955
Hin6I	GCGC	4 cut(s)	68, 435, 1220, 2288
HinP1I	GCGC	4 cut(s)	68, 435, 1220, 2288
HincII	GTYRAC	1 cut(s)	1390
HindII	GTYRAC	1 cut(s)	1390
HindIII	AAGCTT	2 cut(s)	787, 1530
HinfI	GANTC	8 cut(s)	54, 127, 932, 1397, 1430, 2393, 2491, 2521
HpaII	CCGG	2 cut(s)	407, 422
HphI	GGTGA	2 cut(s)	470, 660
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	7 cut(s)	190, 361, 1089, 1406, 1592, 2452, 2547
HpyCH4III	ACNGT	4 cut(s)	252, 2604, 3079, 3084
HpyCH4IV	ACGT	1 cut(s)	2926
HpySE526I	ACGT	1 cut(s)	2926
Hsp92II	CATG	8 cut(s)	169, 448, 926, 932, 1135, 1277, 1595, 1955
HspAI	GCGC	4 cut(s)	68, 435, 1220, 2288
Kpn2I	TCCGGA	1 cut(s)	421
Ksp22I	TGATCA	2 cut(s)	925, 2251
LguI	GCTCTTC	1 cut(s)	466
LmnI	GCTCC	9 cut(s)	18, 424, 424, 646, 654, 1217, 1679, 2879, 2887
Lsp1109I	GCAGC	8 cut(s)	273, 550, 1063, 1069, 1441, 2824, 2836, 2839
LweI	GCATC	9 cut(s)	325, 439, 1016, 1342, 1426, 1510, 1729, 1861, 2035
MabI	ACCWGGT	1 cut(s)	2809
MaeI	CTAG	6 cut(s)	1124, 1262, 2193, 2421, 2525, 2850
MaeII	ACGT	1 cut(s)	2926
MaeIII	GTNAC	3 cut(s)	1732, 2261, 2437
MfeI	CAATTG	3 cut(s)	1725, 2427, 2651
MflI	RGATCY	8 cut(s)	28, 1036, 1301, 1447, 1918, 2279, 2464, 3034
MhlI	GDGCHC	5 cut(s)	651, 729, 1069, 2132, 2884
MlyI	GAGTC	2 cut(s)	1439, 2485
MmeI	TCCRAC	7 cut(s)	1056, 1413, 1537, 2452, 2795, 2887, 2909
MroI	TCCGGA	1 cut(s)	421
MslI	CAYNNNNRTG	3 cut(s)	927, 1347, 2485
MspA1I	CMGCKG	2 cut(s)	697, 940
MspCI	CTTAAG	2 cut(s)	2546, 2732
MspI	CCGG	2 cut(s)	407, 422
MspR9I	CCNGG	6 cut(s)	825, 1031, 1322, 1916, 2161, 2811
MunI	CAATTG	3 cut(s)	1725, 2427, 2651
Mva1269I	GAATGC	3 cut(s)	2170, 2305, 2481
MvaI	CCWGG	6 cut(s)	825, 1031, 1322, 1916, 2161, 2811
MvnI	CGCG	2 cut(s)	155, 435
NdeI	CATATG	1 cut(s)	2986
NheI	GCTAGC	1 cut(s)	1261
NlaIII	CATG	8 cut(s)	169, 448, 926, 932, 1135, 1277, 1595, 1955
NlaIV	GGNNCC	5 cut(s)	420, 899, 1197, 1552, 2466
NmuCI	GTSAC	2 cut(s)	1732, 2261
NsbI	TGCGCA	1 cut(s)	2289
NspI	RCATGY	3 cut(s)	169, 1135, 1595
OliI	CACNNNNGTG	1 cut(s)	2485
PaeI	GCATGC	1 cut(s)	169
PagI	TCATGA	1 cut(s)	928
PasI	CCCWGGG	2 cut(s)	824, 1321
PciI	ACATGT	1 cut(s)	1131
PciSI	GCTCTTC	1 cut(s)	466
PctI	GAATGC	3 cut(s)	2170, 2305, 2481
PfeI	GAWTC	6 cut(s)	54, 127, 932, 1397, 2393, 2521
PfoI	TCCNGGA	3 cut(s)	1029, 1914, 2159
PkrI	GCNGC	8 cut(s)	288, 565, 1053, 1084, 1456, 2826, 2829, 2839
Ple19I	CGATCG	1 cut(s)	327
PleI	GAGTC	2 cut(s)	1438, 2485
PpsI	GAGTC	2 cut(s)	1438, 2485
PscI	ACATGT	1 cut(s)	1131
Psp124BI	GAGCTC	2 cut(s)	651, 2884
Psp6I	CCWGG	6 cut(s)	823, 1029, 1320, 1914, 2159, 2809
PspGI	CCWGG	6 cut(s)	823, 1029, 1320, 1914, 2159, 2809
PspN4I	GGNNCC	5 cut(s)	420, 899, 1197, 1552, 2466
PspPI	GGNCC	4 cut(s)	898, 2111, 2432, 2712
PsrI	GAACNNNNNNTAC	2 cut(s)	2797, 2829
PstI	CTGCAG	1 cut(s)	913
PsuI	RGATCY	8 cut(s)	28, 1036, 1301, 1447, 1918, 2279, 2464, 3034
PvuI	CGATCG	1 cut(s)	327
RsaI	GTAC	8 cut(s)	683, 830, 921, 1203, 1233, 2511, 2921, 3081
RsaNI	GTAC	8 cut(s)	682, 829, 920, 1202, 1232, 2510, 2920, 3080
RseI	CAYNNNNRTG	3 cut(s)	927, 1347, 2485
SacI	GAGCTC	2 cut(s)	651, 2884
SapI	GCTCTTC	1 cut(s)	466
SatI	GCNGC	8 cut(s)	287, 564, 1052, 1083, 1455, 2825, 2828, 2838
Sau96I	GGNCC	4 cut(s)	898, 2111, 2432, 2712
SchI	GAGTC	2 cut(s)	1439, 2485
ScrFI	CCNGG	6 cut(s)	825, 1031, 1322, 1916, 2161, 2811
SduI	GDGCHC	5 cut(s)	651, 729, 1069, 2132, 2884
SexAI	ACCWGGT	1 cut(s)	2809
SfaNI	GCATC	9 cut(s)	325, 439, 1016, 1342, 1426, 1510, 1729, 1861, 2035
SfcI	CTRYAG	5 cut(s)	567, 909, 1284, 1570, 2600
SinI	GGWCC	3 cut(s)	898, 2111, 2432
SmiMI	CAYNNNNRTG	3 cut(s)	927, 1347, 2485
SmlI	CTYRAG	5 cut(s)	2546, 2638, 2732, 2831, 2996
SmoI	CTYRAG	5 cut(s)	2546, 2638, 2732, 2831, 2996
SphI	GCATGC	1 cut(s)	169
SsiI	CCGC	9 cut(s)	155, 293, 697, 719, 938, 1372, 1636, 1798, 2334
SspI	AATATT	1 cut(s)	3018
SspMI	CTAG	6 cut(s)	1124, 1262, 2193, 2421, 2525, 2850
SstI	GAGCTC	2 cut(s)	651, 2884
StyD4I	CCNGG	6 cut(s)	823, 1029, 1320, 1914, 2159, 2809
StyI	CCWWGG	2 cut(s)	978, 2342
TaaI	ACNGT	4 cut(s)	252, 2604, 3079, 3084
TaiI	ACGT	1 cut(s)	2929
TaqI	TCGA	7 cut(s)	36, 52, 760, 1535, 2357, 2689, 3069
TatI	WGTACW	2 cut(s)	681, 2919
TfiI	GAWTC	6 cut(s)	54, 127, 932, 1397, 2393, 2521
TscAI	CASTG	7 cut(s)	197, 759, 1645, 1737, 2019, 2037, 2220
TseFI	GTSAC	2 cut(s)	1732, 2261
TseI	GCWGC	8 cut(s)	286, 563, 1051, 1082, 1454, 2824, 2827, 2837
Tsp45I	GTSAC	2 cut(s)	1732, 2261
TspRI	CASTG	7 cut(s)	197, 759, 1645, 1737, 2019, 2037, 2220
Vha464I	CTTAAG	2 cut(s)	2546, 2732
VpaK11BI	GGWCC	3 cut(s)	898, 2111, 2432
XapI	RAATTY	7 cut(s)	185, 360, 811, 1580, 1780, 1812, 2685
XbaI	TCTAGA	1 cut(s)	1123
XceI	RCATGY	3 cut(s)	169, 1135, 1595
XcmI	CCANNNNNNNNNTGG	1 cut(s)	297
XmiI	GTMKAC	2 cut(s)	905, 2960
XspI	CTAG	6 cut(s)	1124, 1262, 2193, 2421, 2525, 2850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.