Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008409

Physical Location & Seq

Genomic Coordinates Forward (+)

15626704 .. 15636213

Gene Structure 9510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG106200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2880 bp

ATGAAGAGGGCGATAAGGAGCGTAGAGGATCTGATCGAGGAGGTTCAGCTTCGATTCATTTGGTGGGCGCTGTTTGTCTTCGCTGTTTCCTACTTCTTGACGCATACAAGCAAATCGATGTGGATGAATCTGCCCATAGCAATCTTACTTGTCGCGGTATTACGCATGCTATTAAATGAGGTGGAATTTCACTGGAAGGTTCATAAGCCTGTTCGTCTGATATCATATTTGTCTCATTTGGAGAAGAAACAGTTGTCTGTGAACGACTCACGCCTTTCTACTTCGCTGCCACCGCCAAAATGGAAAAGGAAAATTGGTTCTCCGATCGTAGAGGATGCAATGAGAGATTTCATTGACAAAATTTTGAAGGATTTTGTGATTGATTTATGGTATTCGGATATAACACCGGACAAGGAGGCTCCAGAGCAGATACGCGCAATTATCATGGATGCTCTTGGTGAAGTATCAGGAAGAGCTAAAGAGATAAACCTTGTTGATTTGCTAACAAGGGATATAATAGATTTAATAGCAGAACATTTAGAGCTTTTCAGAAGAAACCAAGCTGCTATAGGTGTTGATGTTATGAAAACATTGTCTTCAGAGGAGAGAGATGAAAGGTTGAAACATCATCTTATGACTTCAAAGGAGCTCCATCCTGCGTTGATATCACCTGAGAGTGAGTACAAGTTTCTTCAGCGGGTAATGGGTGGAGTGATAGCGGTGGTGCTCAGACCACGAGAAGCTCAATGTCCAGTGGTTCGATCCATTGCCAGAGAACTATTAACAAGCTTGGTAATTGAACCTGTTATGAATTTCGCAAGCCCTGGGTACATCAATGAGTTGATTGAATATGTTTTGGAAATTGTTAAAGATTATATCTTTAAAGAGGCAGCTGGGGACCAGTCTACTGCAGGGGGCGTACATGATCATGATTCTCCGCTGAAATATGCTACCTTTAATCAGAGGACTGATACCTTGGCTAAAATTGAAAATCAGGGAGAAGCATCCTCGGACTATAACACATTCCAGGAAGATCCTTTGCAGTCGCAGCCTGCTGTTTGGGCACGAGGGTTGGAGGCTGCGACACAGAGAAGGACTGAAGTTCTTACTCCTGAAAATCTAGAAAACATGTGGACAAAAGGAAGAAACTATAAAAAGAAAGAACACAAGAGAAAAATAACAGGAGTTCAGGAACCTGTACCAAAGGGTTCAGGAGCGCATAGTGCTGTACCTGCAAAAAAGTTGGGGAATGAAATGCTAGCTAACAGGCATGATATTTCTACAGGAGAGGAAGATAGATCTATTGTAAATCTAACCCAGGGGGCAAGTTTTGACACCCATTTTAGTGATGCGACTAAAAAGGAGTTGCGGTTCTCTTCAGATGTCAACAAGGAATCAATTTCTAAGGAAGGGCATCTTGTTGATGAGTCGGATGACGATAGAGATCTTGCTGCTAATGGAGTTAAAAGTAGCCTTAAACGATCAAATAGCACTTCTGCTTTGAAAATCCAACCTGACGCAAAAAAAGCTTCGACACAAGGTGGAGGTTCCATCATTTCAGAGTTCTATAGTCCTGAATTTGGCAGGCATGTAGAAGGGCATATTGGTAAGAGTGCCTCAGATATGGTAGTCCGCAGTGTGGGACAAGTTCCCAAGCTCAGGTGCCGGGTTATGGGAGCATACTTTGAGAAACTAGGGTCAAAATCTTTTGCAGTTTATTCAATTGCAGTGACAGATGCAGAAAACAGAACTTGGTTTGTGAAACGAAGATATAGGAATTTTGAGCGACTACACCGCTATCTCAAAGAAATTCCAAATTACACCTTACATTTGCCCCCCAAAAGGATATTCTCATCAAGCACAGAGGATGCTTTTGTTCATCAGCGATGTATCCAGCTTGACAGATATCTCCAGGATCTTTTGTCAATAGCGAACGTTGCTGAACAGCATGAAGTTTGGGATTTTTTAAGTGCTACCTCGAAGAATTACTCATTTGGAAAATCTCCCTCAGTGATGAGAACTCTTGCAGTGAATGTGGATGATGCTGTGGACGATATTGTTCGCCAGTTCAAAGGGGTTTCAGATGGCTTAATGCGTGCCGTTGTTGGTCCATCCACTTCTGAGGGCTCATCTTCAATTCCTGTGTTGAACTTGTCCTGGAATGCCGAAGAGACAAGTGAAAATGTTTCTAGGCAAAATACAGGGGACACACTGAGTAGCTTTTCTGATAATGAGCCTGCCGAAAATGATCAAAGTTGTGACCCTGTGGAAGTCAGATCTAATGCACAGGATAGTGGGTGGCATTCAGACAATGAATTGGACTTTAAGGGCGGACAACCTTGGATTAAACATTCGAGAAGCATAGGGTTGCAGAAGAAAGTGGTTGTGGATTCTGGGGGTGGCAATGATGTCTTTCCTAGAGCAATTGGTCGAGTAACCTTCAATCCTTTGGAACTGGAGGATCCAGTTGGAATGCCACCTGAGTGGACTCCACCCAATGTTAGTGTACCTCTGTTGAATCTAGTGGACAAGGTATTTCAGCTTAAGAGAAGGGGATGGCTAAGAAGACAAGTGTTTTGGATGTCAAAACAAATACTACAGTTGATGATGGAAGACGCTATTGATGACTGGCTCTTGAGGCATATTCAATTGCTTCGGAGGGAGGATATTATAGCTTCAGGAATTCGATGGCTTCAAGATGTTCTATGGCCCAATGGCACATTCTTCCTTAAGGTTGGTAATGCTAAAGACGATCAAAACTCTCTTCCAACTACGAACCAATTTGGTGGTAGTAAGGTTGGTAAACCAGGTTCTTTTGAGCAGCAGCTTGAGGCTGCTCGGAGAGCTAGTGATCTGAAGAAACTGCTCTTTGGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0006605 GO:0006622 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0007041 GO:0008104 GO:0008150 GO:0008289 GO:0008333 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016482 GO:0019898 GO:0031090 GO:0031312 GO:0031313 GO:0031410 GO:0031982 GO:0033036 GO:0033365 GO:0034613 GO:0035091 GO:0042802 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061462 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098805 GO:0098927

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nexin_C PX PXA

Protein Analysis

959

Amino Acids

108.35

Weight (kDa)

6.43

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PXA	PF02194	107 - 285	3.6e-42	PXA domain
PX	PF00787	581 - 657	7.1e-14	PX domain
Nexin_C	PF08628	853 - 929	2.4e-14	Sorting nexin C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15900
fragaria_vesca	FvH4_2g07180 FvH4_2g07180 FvH4_2g07180 FvH4_2g07180 FvH4_2g07180 FvH4_2g07180
malus_domestica	MD05G1073000.v1.1 MD10G1087600.v1.1
prunus_persica	Prupe.8G113600_v2.0.a1 Prupe.8G113600_v2.0.a1
pyrus_communis	pycom05g06550 pycom10g06990
rosa_chinensis	RchiOBHm_Chr6g0259621
rosa_laevigata	RLG00000014517
rosa_multiflora	Rmu_sc0000536.1_g000017
rosa_roxburghii	Rroxscaffold_7G00206920
rosa_rugosa	Rorug05G0590000
rosa_samantha	Rh6AG106200 Rh6BG100700 Rh6CG095300 Rh6DG089200
rosa_wichuraiana	Rw6G009180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1240
AccB1I	GGYRCC	1 cut(s)	1662
AccI	GTMKAC	1 cut(s)	905
AccII	CGCG	2 cut(s)	155, 435
AciI	CCGC	9 cut(s)	155, 293, 697, 719, 938, 1369, 1633, 1795, 2331
AclI	AACGTT	1 cut(s)	1935
AclWI	GGATC	6 cut(s)	36, 756, 1028, 1923, 2456, 2469
AcsI	RAATTY	7 cut(s)	185, 360, 811, 1577, 1777, 1809, 2682
AcuI	CTGAAG	6 cut(s)	582, 677, 1119, 1362, 2661, 2876
AdeI	CACNNNGTG	1 cut(s)	1541
AfaI	GTAC	6 cut(s)	683, 830, 921, 1200, 1230, 2508
AfiI	CCNNNNNNNGG	5 cut(s)	1580, 1639, 1659, 1672, 1842
AflII	CTTAAG	2 cut(s)	2543, 2729
AflIII	ACRYGT	1 cut(s)	1128
AjnI	CCWGG	6 cut(s)	823, 1026, 1317, 1911, 2156, 2806
AjuI	GAANNNNNNNTTGG	6 cut(s)	1587, 1619, 1832, 1864, 2705, 2737
AleI	CACNNNNGTG	1 cut(s)	2482
AloI	GAACNNNNNNTCC	4 cut(s)	301, 333, 1355, 1387
Alw21I	GWGCWC	2 cut(s)	651, 729
Alw26I	GTCTC	2 cut(s)	237, 2165
AlwI	GGATC	6 cut(s)	36, 756, 1028, 1923, 2456, 2469
AoxI	GGCC	1 cut(s)	2708
ApeKI	GCWGC	9 cut(s)	286, 563, 890, 1048, 1079, 1451, 2821, 2824, 2834
ApoI	RAATTY	7 cut(s)	185, 360, 811, 1577, 1777, 1809, 2682
ArsI	GACNNNNNNTTYG	2 cut(s)	2559, 2591
AspLEI	GCGC	3 cut(s)	70, 437, 1219
AspS9I	GGNCC	1 cut(s)	898
AsuC2I	CCSGG	1 cut(s)	1667
AsuHPI	GGTGA	2 cut(s)	470, 660
AsuNHI	GCTAGC	1 cut(s)	1258
AvaII	GGWCC	2 cut(s)	898, 2108
BaeGI	GKGCMC	1 cut(s)	1066
BamHI	GGATCC	1 cut(s)	2461
BanI	GGYRCC	1 cut(s)	1662
BanII	GRGCYC	2 cut(s)	651, 2129
BauI	CACGAG	2 cut(s)	735, 1065
BbsI	GAAGAC	4 cut(s)	70, 588, 2572, 2619
Bbv12I	GWGCWC	2 cut(s)	651, 729
BbvI	GCAGC	9 cut(s)	273, 550, 902, 1060, 1066, 1438, 2821, 2833, 2836
BccI	CCATC	7 cut(s)	660, 1559, 2078, 2119, 2550, 2602, 2682
BceAI	ACGGC	1 cut(s)	2084
BciT130I	CCWGG	6 cut(s)	825, 1028, 1319, 1913, 2158, 2808
BciVI	GTATCC	1 cut(s)	1901
BclI	TGATCA	2 cut(s)	925, 2248
BcnI	CCSGG	1 cut(s)	1667
BcoDI	GTCTC	2 cut(s)	237, 2165
BfaI	CTAG	7 cut(s)	1121, 1259, 1694, 2190, 2418, 2522, 2847
BfmI	CTRYAG	5 cut(s)	567, 909, 1281, 1567, 2597
BfoI	RGCGCY	1 cut(s)	71
BfrI	CTTAAG	2 cut(s)	2543, 2729
BfuAI	ACCTGC	1 cut(s)	1240
BfuI	GTATCC	1 cut(s)	1901
BglII	AGATCT	3 cut(s)	1298, 1444, 2276
BisI	GCNGC	9 cut(s)	287, 564, 891, 1049, 1080, 1452, 2822, 2825, 2835
BlsI	GCNGC	9 cut(s)	288, 565, 892, 1050, 1081, 1453, 2823, 2826, 2836
Bme1390I	CCNGG	7 cut(s)	825, 1028, 1319, 1667, 1913, 2158, 2808
Bme18I	GGWCC	2 cut(s)	898, 2108
BmgT120I	GGNCC	3 cut(s)	898, 2108, 2709
BmiI	GGNNCC	6 cut(s)	420, 899, 1194, 1549, 1664, 2463
BmrFI	CCNGG	7 cut(s)	825, 1028, 1319, 1667, 1913, 2158, 2808
BmsI	GCATC	8 cut(s)	325, 439, 1013, 1339, 1423, 1726, 1858, 2032
BmtI	GCTAGC	1 cut(s)	1262
BpiI	GAAGAC	4 cut(s)	70, 588, 2572, 2619
BpmI	CTGGAG	3 cut(s)	405, 1895, 2477
Bpu10I	CCTNAGC	1 cut(s)	1658
BpuEI	CTTGAG	2 cut(s)	2656, 2849
BpuMI	CCSGG	1 cut(s)	1667
Bsa29I	ATCGAT	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	1443
BsaJI	CCNNGG	7 cut(s)	823, 824, 975, 1008, 1317, 1318, 2339
BsaWI	WCCGGW	1 cut(s)	406
BsaXI	ACNNNNNCTCC	4 cut(s)	1355, 1385, 2833, 2863
Bsc4I	CCNNNNNNNGG	5 cut(s)	1580, 1639, 1659, 1672, 1842
Bse1I	ACTGG	7 cut(s)	197, 752, 901, 2065, 2460, 2465, 2633
Bse3DI	GCAATG	3 cut(s)	345, 765, 2410
Bse8I	GATNNNNATC	1 cut(s)	1443
BseBI	CCWGG	6 cut(s)	825, 1028, 1319, 1913, 2158, 2808
BseCI	ATCGAT	1 cut(s)	116
BseDI	CCNNGG	7 cut(s)	823, 824, 975, 1008, 1317, 1318, 2339
BseJI	GATNNNNATC	1 cut(s)	1443
BseLI	CCNNNNNNNGG	5 cut(s)	1580, 1639, 1659, 1672, 1842
BseMI	GCAATG	3 cut(s)	345, 765, 2410
BseMII	CTCAG	8 cut(s)	663, 742, 1632, 1672, 2022, 2112, 2204, 2472
BseNI	ACTGG	7 cut(s)	197, 752, 901, 2065, 2460, 2465, 2633
BseRI	GAGGAG	2 cut(s)	53, 617
BseSI	GKGCMC	1 cut(s)	1066
BseXI	GCAGC	9 cut(s)	273, 550, 902, 1060, 1066, 1438, 2821, 2833, 2836
BseYI	CCCAGC	1 cut(s)	893
Bsh1236I	CGCG	2 cut(s)	155, 435
Bsh1285I	CGRYCG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	2710
BshNI	GGYRCC	1 cut(s)	1662
BshVI	ATCGAT	1 cut(s)	116
BsiEI	CGRYCG	1 cut(s)	327
BsiHKAI	GWGCWC	2 cut(s)	651, 729
BsiSI	CCGG	2 cut(s)	407, 1666
BslFI	GGGAC	3 cut(s)	911, 1656, 2219
BslI	CCNNNNNNNGG	5 cut(s)	1580, 1639, 1659, 1672, 1842
BsmAI	GTCTC	2 cut(s)	237, 2165
BsmFI	GGGAC	3 cut(s)	911, 1656, 2219
BsmI	GAATGC	3 cut(s)	2167, 2302, 2478
BsnI	GGCC	1 cut(s)	2710
Bsp1286I	GDGCHC	4 cut(s)	651, 729, 1066, 2129
BspACI	CCGC	9 cut(s)	155, 293, 697, 719, 938, 1369, 1633, 1795, 2331
BspANI	GGCC	1 cut(s)	2710
BspCNI	CTCAG	8 cut(s)	664, 741, 1631, 1671, 2021, 2113, 2205, 2473
BspDI	ATCGAT	1 cut(s)	116
BspFNI	CGCG	2 cut(s)	155, 435
BspHI	TCATGA	1 cut(s)	928
BspLI	GGNNCC	6 cut(s)	420, 899, 1194, 1549, 1664, 2463
BspMAI	CTGCAG	1 cut(s)	913
BspMI	ACCTGC	1 cut(s)	1240
BspOI	GCTAGC	1 cut(s)	1262
BspPI	GGATC	6 cut(s)	36, 756, 1028, 1923, 2456, 2469
BspQI	GCTCTTC	1 cut(s)	466
BspT107I	GGYRCC	1 cut(s)	1662
BspTI	CTTAAG	2 cut(s)	2543, 2729
BsrDI	GCAATG	3 cut(s)	345, 765, 2410
BsrI	ACTGG	7 cut(s)	197, 752, 901, 2065, 2460, 2465, 2633
BssECI	CCNNGG	7 cut(s)	823, 824, 975, 1008, 1317, 1318, 2339
BssSI	CACGAG	2 cut(s)	735, 1065
BssT1I	CCWWGG	2 cut(s)	975, 2339
Bst2BI	CACGAG	2 cut(s)	735, 1065
Bst2UI	CCWGG	6 cut(s)	825, 1028, 1319, 1913, 2158, 2808
Bst4CI	ACNGT	2 cut(s)	252, 2601
Bst6I	CTCTTC	4 cut(s)	466, 1381, 2163, 2769
BstAFI	CTTAAG	2 cut(s)	2543, 2729
BstC8I	GCNNGC	7 cut(s)	167, 820, 1053, 1260, 1586, 2097, 2238
BstFNI	CGCG	2 cut(s)	155, 435
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	3 cut(s)	70, 437, 1219
BstMAI	GTCTC	2 cut(s)	237, 2165
BstMCI	CGRYCG	1 cut(s)	327
BstMWI	GCNNNNNNNGC	9 cut(s)	292, 1048, 1061, 1223, 1232, 1526, 1937, 2638, 2843
BstNI	CCWGG	6 cut(s)	825, 1028, 1319, 1913, 2158, 2808
BstNSI	RCATGY	3 cut(s)	169, 1132, 1592
BstSCI	CCNGG	7 cut(s)	823, 1026, 1317, 1665, 1911, 2156, 2806
BstSFI	CTRYAG	5 cut(s)	567, 909, 1281, 1567, 2597
BstSLI	GKGCMC	1 cut(s)	1066
BstUI	CGCG	2 cut(s)	155, 435
BstV1I	GCAGC	9 cut(s)	273, 550, 902, 1060, 1066, 1438, 2821, 2833, 2836
BstV2I	GAAGAC	4 cut(s)	70, 588, 2572, 2619
BstX2I	RGATCY	7 cut(s)	28, 1033, 1298, 1444, 1915, 2276, 2461
BstXI	CCANNNNNNTGG	2 cut(s)	2484, 2786
BstYI	RGATCY	7 cut(s)	28, 1033, 1298, 1444, 1915, 2276, 2461
Bsu15I	ATCGAT	1 cut(s)	116
BsuI	GTATCC	1 cut(s)	1901
BsuRI	GGCC	1 cut(s)	2710
BsuTUI	ATCGAT	1 cut(s)	116
BtgZI	GCGATG	1 cut(s)	1900
BtsI	GCAGTG	3 cut(s)	1642, 1734, 2034
BtsIMutI	CAGTG	7 cut(s)	190, 759, 1642, 1734, 2016, 2034, 2210
BveI	ACCTGC	1 cut(s)	1240
Cac8I	GCNNGC	7 cut(s)	167, 820, 1053, 1260, 1586, 2097, 2238
CciI	TCATGA	1 cut(s)	928
CfoI	GCGC	3 cut(s)	70, 437, 1219
Cfr13I	GGNCC	3 cut(s)	898, 2108, 2709
ClaI	ATCGAT	1 cut(s)	116
CseI	GACGC	3 cut(s)	109, 1526, 2624
CsiI	ACCWGGT	1 cut(s)	2806
Csp6I	GTAC	6 cut(s)	682, 829, 920, 1199, 1229, 2507
CviAII	CATG	8 cut(s)	166, 445, 923, 929, 1129, 1271, 1589, 1949
CviQI	GTAC	6 cut(s)	682, 829, 920, 1199, 1229, 2507
DraI	TTTAAA	1 cut(s)	883
DraIII	CACNNNGTG	1 cut(s)	1541
Eam1104I	CTCTTC	4 cut(s)	466, 1381, 2163, 2769
EarI	CTCTTC	4 cut(s)	466, 1381, 2163, 2769
EciI	GGCGGA	1 cut(s)	2346
Ecl136II	GAGCTC	1 cut(s)	649
Eco130I	CCWWGG	2 cut(s)	975, 2339
Eco24I	GRGCYC	2 cut(s)	651, 2129
Eco32I	GATATC	3 cut(s)	222, 666, 1907
Eco47I	GGWCC	2 cut(s)	898, 2108
Eco53kI	GAGCTC	1 cut(s)	649
Eco57I	CTGAAG	6 cut(s)	582, 677, 1119, 1362, 2661, 2876
EcoICRI	GAGCTC	1 cut(s)	649
EcoRI	GAATTC	1 cut(s)	2682
EcoRII	CCWGG	6 cut(s)	823, 1026, 1317, 1911, 2156, 2806
EcoRV	GATATC	3 cut(s)	222, 666, 1907
EcoT14I	CCWWGG	2 cut(s)	975, 2339
EcoT38I	GRGCYC	2 cut(s)	651, 2129
ErhI	CCWWGG	2 cut(s)	975, 2339
FaeI	CATG	8 cut(s)	169, 448, 926, 932, 1132, 1274, 1592, 1952
FalI	AAGNNNNNCTT	2 cut(s)	1401, 1433
FaqI	GGGAC	3 cut(s)	911, 1656, 2219
FatI	CATG	8 cut(s)	165, 444, 922, 928, 1128, 1270, 1588, 1948
FauI	CCCGC	1 cut(s)	690
FbaI	TGATCA	2 cut(s)	925, 2248
FblI	GTMKAC	1 cut(s)	905
Fnu4HI	GCNGC	9 cut(s)	287, 564, 891, 1049, 1080, 1452, 2822, 2825, 2835
FriOI	GRGCYC	2 cut(s)	651, 2129
Fsp4HI	GCNGC	9 cut(s)	287, 564, 891, 1049, 1080, 1452, 2822, 2825, 2835
FspBI	CTAG	7 cut(s)	1121, 1259, 1694, 2190, 2418, 2522, 2847
GlaI	GCGC	3 cut(s)	69, 436, 1218
GluI	GCNGC	9 cut(s)	287, 564, 891, 1049, 1080, 1452, 2822, 2825, 2835
GsaI	CCCAGC	1 cut(s)	897
GsuI	CTGGAG	3 cut(s)	405, 1895, 2477
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	2710
HapII	CCGG	2 cut(s)	407, 1666
HgaI	GACGC	3 cut(s)	109, 1526, 2624
HhaI	GCGC	3 cut(s)	70, 437, 1219
Hin1II	CATG	8 cut(s)	169, 448, 926, 932, 1132, 1274, 1592, 1952
Hin6I	GCGC	3 cut(s)	68, 435, 1217
HinP1I	GCGC	3 cut(s)	68, 435, 1217
HincII	GTYRAC	1 cut(s)	1387
HindII	GTYRAC	1 cut(s)	1387
HindIII	AAGCTT	2 cut(s)	787, 1527
HinfI	GANTC	9 cut(s)	54, 127, 266, 932, 1394, 1427, 2390, 2488, 2518
HpaII	CCGG	2 cut(s)	407, 1666
HphI	GGTGA	2 cut(s)	470, 660
Hpy166II	GTNNAC	9 cut(s)	262, 906, 1134, 1387, 2050, 2487, 2507, 2527, 2804
Hpy8I	GTNNAC	9 cut(s)	262, 906, 1134, 1387, 2050, 2487, 2507, 2527, 2804
HpyAV	CCTTC	7 cut(s)	190, 361, 1086, 1403, 1589, 2449, 2544
HpyCH4III	ACNGT	2 cut(s)	252, 2601
HpyCH4IV	ACGT	1 cut(s)	1935
HpyF10VI	GCNNNNNNNGC	9 cut(s)	292, 1048, 1061, 1223, 1232, 1526, 1937, 2638, 2843
HpySE526I	ACGT	1 cut(s)	1935
Hsp92II	CATG	8 cut(s)	169, 448, 926, 932, 1132, 1274, 1592, 1952
HspAI	GCGC	3 cut(s)	68, 435, 1217
Ksp22I	TGATCA	2 cut(s)	925, 2248
LguI	GCTCTTC	1 cut(s)	466
LmnI	GCTCC	6 cut(s)	18, 424, 646, 654, 1214, 1676
Lsp1109I	GCAGC	9 cut(s)	273, 550, 902, 1060, 1066, 1438, 2821, 2833, 2836
LweI	GCATC	8 cut(s)	325, 439, 1013, 1339, 1423, 1726, 1858, 2032
MabI	ACCWGGT	1 cut(s)	2806
MaeI	CTAG	7 cut(s)	1121, 1259, 1694, 2190, 2418, 2522, 2847
MaeII	ACGT	1 cut(s)	1935
MaeIII	GTNAC	3 cut(s)	1729, 2258, 2434
MfeI	CAATTG	3 cut(s)	1722, 2424, 2648
MflI	RGATCY	7 cut(s)	28, 1033, 1298, 1444, 1915, 2276, 2461
MhlI	GDGCHC	4 cut(s)	651, 729, 1066, 2129
MlyI	GAGTC	3 cut(s)	260, 1436, 2482
MmeI	TCCRAC	5 cut(s)	1053, 1410, 1534, 2449, 2792
MslI	CAYNNNNRTG	3 cut(s)	927, 1344, 2482
MspA1I	CMGCKG	3 cut(s)	697, 893, 940
MspCI	CTTAAG	2 cut(s)	2543, 2729
MspI	CCGG	2 cut(s)	407, 1666
MspR9I	CCNGG	7 cut(s)	825, 1028, 1319, 1667, 1913, 2158, 2808
MunI	CAATTG	3 cut(s)	1722, 2424, 2648
Mva1269I	GAATGC	3 cut(s)	2167, 2302, 2478
MvaI	CCWGG	6 cut(s)	825, 1028, 1319, 1913, 2158, 2808
MvnI	CGCG	2 cut(s)	155, 435
MwoI	GCNNNNNNNGC	9 cut(s)	292, 1048, 1061, 1223, 1232, 1526, 1937, 2638, 2843
NciI	CCSGG	1 cut(s)	1667
NheI	GCTAGC	1 cut(s)	1258
NlaIII	CATG	8 cut(s)	169, 448, 926, 932, 1132, 1274, 1592, 1952
NlaIV	GGNNCC	6 cut(s)	420, 899, 1194, 1549, 1664, 2463
NmuCI	GTSAC	2 cut(s)	1729, 2258
NspI	RCATGY	3 cut(s)	169, 1132, 1592
OliI	CACNNNNGTG	1 cut(s)	2482
PaeI	GCATGC	1 cut(s)	169
PagI	TCATGA	1 cut(s)	928
PasI	CCCWGGG	2 cut(s)	824, 1318
PciI	ACATGT	1 cut(s)	1128
PciSI	GCTCTTC	1 cut(s)	466
PctI	GAATGC	3 cut(s)	2167, 2302, 2478
PfeI	GAWTC	6 cut(s)	54, 127, 932, 1394, 2390, 2518
PfoI	TCCNGGA	3 cut(s)	1026, 1911, 2156
PkrI	GCNGC	9 cut(s)	288, 565, 892, 1050, 1081, 1453, 2823, 2826, 2836
Ple19I	CGATCG	1 cut(s)	327
PleI	GAGTC	3 cut(s)	260, 1435, 2482
PpsI	GAGTC	3 cut(s)	260, 1435, 2482
PscI	ACATGT	1 cut(s)	1128
Psp124BI	GAGCTC	1 cut(s)	651
Psp1406I	AACGTT	1 cut(s)	1935
Psp6I	CCWGG	6 cut(s)	823, 1026, 1317, 1911, 2156, 2806
PspFI	CCCAGC	1 cut(s)	893
PspGI	CCWGG	6 cut(s)	823, 1026, 1317, 1911, 2156, 2806
PspN4I	GGNNCC	6 cut(s)	420, 899, 1194, 1549, 1664, 2463
PspPI	GGNCC	3 cut(s)	898, 2108, 2709
PsrI	GAACNNNNNNTAC	2 cut(s)	2794, 2826
PstI	CTGCAG	1 cut(s)	913
PsuI	RGATCY	7 cut(s)	28, 1033, 1298, 1444, 1915, 2276, 2461
PvuI	CGATCG	1 cut(s)	327
PvuII	CAGCTG	1 cut(s)	893
RsaI	GTAC	6 cut(s)	683, 830, 921, 1200, 1230, 2508
RsaNI	GTAC	6 cut(s)	682, 829, 920, 1199, 1229, 2507
RseI	CAYNNNNRTG	3 cut(s)	927, 1344, 2482
SacI	GAGCTC	1 cut(s)	651
SapI	GCTCTTC	1 cut(s)	466
SatI	GCNGC	9 cut(s)	287, 564, 891, 1049, 1080, 1452, 2822, 2825, 2835
Sau96I	GGNCC	3 cut(s)	898, 2108, 2709
SchI	GAGTC	3 cut(s)	260, 1436, 2482
ScrFI	CCNGG	7 cut(s)	825, 1028, 1319, 1667, 1913, 2158, 2808
SduI	GDGCHC	4 cut(s)	651, 729, 1066, 2129
SexAI	ACCWGGT	1 cut(s)	2806
SfaNI	GCATC	8 cut(s)	325, 439, 1013, 1339, 1423, 1726, 1858, 2032
SfcI	CTRYAG	5 cut(s)	567, 909, 1281, 1567, 2597
SinI	GGWCC	2 cut(s)	898, 2108
SmiMI	CAYNNNNRTG	3 cut(s)	927, 1344, 2482
SmlI	CTYRAG	4 cut(s)	2543, 2635, 2729, 2828
SmoI	CTYRAG	4 cut(s)	2543, 2635, 2729, 2828
SphI	GCATGC	1 cut(s)	169
SsiI	CCGC	9 cut(s)	155, 293, 697, 719, 938, 1369, 1633, 1795, 2331
SspMI	CTAG	7 cut(s)	1121, 1259, 1694, 2190, 2418, 2522, 2847
SstI	GAGCTC	1 cut(s)	651
StyD4I	CCNGG	7 cut(s)	823, 1026, 1317, 1665, 1911, 2156, 2806
StyI	CCWWGG	2 cut(s)	975, 2339
TaaI	ACNGT	2 cut(s)	252, 2601
TaiI	ACGT	1 cut(s)	1938
TaqI	TCGA	9 cut(s)	36, 52, 116, 760, 1532, 1979, 2354, 2431, 2686
TatI	WGTACW	1 cut(s)	681
TfiI	GAWTC	6 cut(s)	54, 127, 932, 1394, 2390, 2518
TscAI	CASTG	7 cut(s)	197, 759, 1642, 1734, 2016, 2034, 2217
TseFI	GTSAC	2 cut(s)	1729, 2258
TseI	GCWGC	9 cut(s)	286, 563, 890, 1048, 1079, 1451, 2821, 2824, 2834
Tsp45I	GTSAC	2 cut(s)	1729, 2258
TspRI	CASTG	7 cut(s)	197, 759, 1642, 1734, 2016, 2034, 2217
Vha464I	CTTAAG	2 cut(s)	2543, 2729
VpaK11BI	GGWCC	2 cut(s)	898, 2108
XapI	RAATTY	7 cut(s)	185, 360, 811, 1577, 1777, 1809, 2682
XbaI	TCTAGA	1 cut(s)	1120
XceI	RCATGY	3 cut(s)	169, 1132, 1592
XcmI	CCANNNNNNNNNTGG	1 cut(s)	297
XmiI	GTMKAC	1 cut(s)	905
XspI	CTAG	7 cut(s)	1121, 1259, 1694, 2190, 2418, 2522, 2847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.