Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008409

Physical Location & Seq

Genomic Coordinates Reverse (-)

12983270 .. 12993709

Gene Structure 10440 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1087600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3039 bp

ATGAAGGCCTTGAATAGCATAGAGGATCTGATCGAGGAGATAAAGCTTCGAGTGGTTTGGTGGGCCCTGTTTGTCTTCTGTGTTACCTACTTCCTTTCCTATTCAAGTAAATCAATGTGGATGAATTTACCCTTATCAATTGTATTGGTTTCGATGTTACGTATTCTATTGAATAATGTGGAATTCCGTTGGAAGGGTCAAAAACCTGTTCGCCCACTGTCATACTTGTCTCATCTGGAGAAGAAACAGTTGTCCTTGAATGATCCACGACTTTCTACTGGGCCTCCACTGCCAAAGTGGAAAAGGAAAATTGGTTCTCCAATTGTAGAGGACGCAATGAAAGATTTCATTGACAAACTTTTGAAGGATTTCGTGATTGATTTGTGGTACTCAGATATTACTCCGGACAAGGAGGCTCCAGAGCAGATACGCGCGATAATCATGGATGCTCTGGGTGAAGTTTCCGGAAGAGTTAAGGAGATAAACCTTGTTGACTTGCTAACAAGGGATATTATTGATTTAATAGGGGATCATATAGAACTTTTTAGAAGAAACCAAGCAGCTATAGGTGTTGATGTTATGAAAACGTTGTCTTCAGAGGAGAGAGATGAAAGGTTAAAACATCATCTCATGGCTTCAAAGGAGCTCCATCCTGCATTGATATCACCCGAGAGTGAGTACAAGGTTCTTCAGCGGCTAATGGGTGGGGTATTAGCTGTGGTGCTAAGACCACGAGAAGCTCAATGTCCAGTGGTTAGATCTATTGCCAGAGAACTTCTAACAAACTTAGTAATTCAACCTGTTTTGAATTTTGCGAGCCCTGGGTATATCAATGAATTGATAGAATATATTTTGCTAGCTGTTAAAGAGGAAATCAGTAAAGTGGTAAGTGGGGACCAGTCAGCTGCAGGGGGTGTACATGATCAAGATTCTCCGTTGAGGAAATATGCAACCTTTAATCAAAACACTGATTTGACATTGGCTGAAGTTGACAATCAGAGAGAAGTGTTTTCGGATTATAATAAATCCCCGGAAGATCCTTTGCAGCCACGGCCTGCTGACTGGGCACGAGTTTTGGAGGCTGCAACACAGAGAAGGACTGAGGTTCTTGCTCCTGAAAATCTTGAAAATATGTGGACAAAAGGGAGAAATTACAAACGTAAAGAGCACAAGAAAAGGATTAGAGGAGTTCAGGAACCTATACCTGAGTGTTCTGGAATAGATAGTGCTGTTCCTGCTAGAAATCTGGGGAAAGAAATGGTTGACGACAGGCATGAAATTTCTACAGGAATGGAAGATACATCTATTGTGAAGCTAAGACGTGAATTAAGTTTAGATACTCAATTAAGTGCTGGGACCAAAAAGGAGATGGAGTTCTTGTTAGACCCCAGTAAAGAATCATTTGCTGATCCAGGGCATCTTGTTAATAAATTGGAGGACATTGGAAACCTTGCGTCTGATGGAAGTAAAAGTAGGCTTAAAAGATCAAATAGCACTTCTGCTTTGAAAATCCAACCAGACACAAAAATAGCATTGACAGAAGGTGGAGGGTCTATCATATCAGAGTTCTATAGCCCTGGGTTTGGCGGGCATAGAGAAGACCGTATTAGTAAGAGTGCCTCAGAGATGGTAGTCCACAGTGTGGGACAACAAGTTCCCAAGCTCAGGTGCCGGGTTATGGGAGCATACTTTGAGAAACTTGGGTCAAAATCTTTTGCAGTTTATTCAATTGCAGTTACAGATTCAGAAAACAGCACTTGGTTTGTGAAAAGAAGATATAGAAATTTTGAACGACTGCATCGCCATCTTAAAGACATTCCAAATTACACATTACATCTACCACCCAAAAGAATATTCTCGTCAAGCACAGAGGATGCTTTTGTTCATCAGCGATGTATTCAGCTAGACAAATATCTACAGGATCTATTGTCAATAGCTAATGTTGCTGAACAGCATGAAGTGTGGGATTTTTTAAGTGGTTCGTCAAAGAATTACTCGTTTGGAAAATCCCCCTCCGTGATGAGAACTCTTGCGGTCAATGTGGATGATGCTGTGGATGACATTGTACGCCAGTTCAAAGGGGTTTCAGATGGGTTAATGCGTAAGGTTGTTGGTCCCACAGCCGAGTCCTCGTCTTTAATTCCTGAATGGAACTTGTCTGCGAATGTAGATGAGACAGGTGTACTTGGTTTTAGGCAAAATACAGCAGAGTCAACAAATAGTTTTTCGGATAACGAGGAAGGTGATAAAGATAGAAGTTGTGACCCTGTAGAAACCAGATCTGGTACTCGAGAAAATGGGTGGCATTCAGACAATGAATTGAATTCGAAGAGCTATCCACCTCGGGTTGTACATACAAGGAGCTTAGTTTTGGAGAAGAAAGCTTATTTAGTTGGTGAGGGTGGCTTTCTGGAGGATCCAGTTGGAATGCCACCTGAGTGGACTCCACCCAATGTTAGCGTGCCTCTGTTGAATCTAGTGGACAAGGTGTTTCAACTTAAAAAAAGGGGCTGGCTGAGAAGACAGGTCTTTTGGATGTCAAAACAAATATTGCAGTTAATGATGGAGGATGCTATTGATGACTGGCTCATGAGGCAGATTCATTGGCTTCGGAGGGAGGATGTTATTGCTTCGGGAATTTATTGGCTTAAAGATGTTCTGTGGCCCAATGGCACATTCTTCCTTAGAATCGGCAATGTTCAAGATGACAACCAAAACCCTCTTCATAATGCAAGTCATCTTGGTGGAAGAAAGGCTGGTAAACCAGGGTCTTTTGAGCAGCAGCTTGAGGCTGCTCGTAGAGCTAGTGACATCAAGAAAATGCTCTTTGATGGAACTCCAACGGCCTTAGTCAGCTTAATTGGGCATAGGCAGTACAGACGTTGTGCAAGAGACATTTATTATTTCACTCAGTCTACCATCTGCATAAAGCAACTTGCATATGCAATACTTGAACTGTCACTTGTTTCAATTTTCCCTGAGCTGCGGGATCTTATTGTTGATATTCATCAAAAGATGGGTGTTGATCAAACTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0006605 GO:0006622 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0007041 GO:0008104 GO:0008150 GO:0008289 GO:0008333 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016482 GO:0019898 GO:0031090 GO:0031312 GO:0031313 GO:0031410 GO:0031982 GO:0033036 GO:0033365 GO:0034613 GO:0035091 GO:0042802 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061462 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098805 GO:0098927

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nexin_C PX PXA

Protein Analysis

1013

Amino Acids

114.93

Weight (kDa)

6.8

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PXA	PF02194	106 - 284	3.2e-42	PXA domain
PX	PF00787	582 - 659	1.2e-13	PX domain
Nexin_C	PF08628	838 - 972	6.4e-25	Sorting nexin C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15900
fragaria_vesca	FvH4_2g07180 FvH4_2g07180 FvH4_2g07180 FvH4_2g07180 FvH4_2g07180 FvH4_2g07180
malus_domestica	MD05G1073000.v1.1 MD10G1087600.v1.1
prunus_persica	Prupe.8G113600_v2.0.a1 Prupe.8G113600_v2.0.a1
pyrus_communis	pycom05g06550 pycom10g06990
rosa_chinensis	RchiOBHm_Chr6g0259621
rosa_laevigata	RLG00000014517
rosa_multiflora	Rmu_sc0000536.1_g000017
rosa_roxburghii	Rroxscaffold_7G00206920
rosa_rugosa	Rorug05G0590000
rosa_samantha	Rh6AG106200 Rh6BG100700 Rh6CG095300 Rh6DG089200
rosa_wichuraiana	Rw6G009180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1020
AccB1I	GGYRCC	1 cut(s)	1668
AccB7I	CCANNNNNTGG	1 cut(s)	1642
AccI	GTMKAC	1 cut(s)	2915
AccII	CGCG	2 cut(s)	432, 434
AccIII	TCCGGA	2 cut(s)	403, 464
AciI	CCGC	4 cut(s)	694, 1587, 2033, 2986
AclI	AACGTT	1 cut(s)	587
AclWI	GGATC	9 cut(s)	33, 257, 537, 1031, 1403, 1929, 2411, 2424, 2997
AcsI	RAATTY	7 cut(s)	124, 182, 808, 1278, 1783, 2323, 2637
AcuI	CTGAAG	3 cut(s)	579, 674, 1005
AdeI	CACNNNGTG	1 cut(s)	1642
AfaI	GTAC	8 cut(s)	389, 680, 918, 2067, 2184, 2287, 2352, 2876
AfiI	CCNNNNNNNGG	5 cut(s)	193, 1583, 1642, 1665, 1678
AjiI	CACGTC	1 cut(s)	1322
AjnI	CCWGG	4 cut(s)	820, 1411, 1576, 2764
AjuI	GAANNNNNNNTTGG	6 cut(s)	1838, 1870, 2660, 2692, 2706, 2738
AleI	CACNNNNGTG	1 cut(s)	2437
AloI	GAACNNNNNNTCC	6 cut(s)	298, 330, 1358, 1390, 1638, 1670
Alw21I	GWGCWC	2 cut(s)	648, 1170
Alw26I	GTCTC	3 cut(s)	234, 2168, 2886
AlwI	GGATC	9 cut(s)	33, 257, 537, 1031, 1403, 1929, 2411, 2424, 2997
Ama87I	CYCGRG	3 cut(s)	668, 2289, 2343
Aor13HI	TCCGGA	2 cut(s)	403, 464
AoxI	GGCC	6 cut(s)	6, 63, 281, 1052, 2663, 2844
ApaI	GGGCCC	1 cut(s)	67
ApeKI	GCWGC	8 cut(s)	560, 905, 1045, 1082, 2779, 2782, 2792, 2983
ApoI	RAATTY	7 cut(s)	124, 182, 808, 1278, 1783, 2323, 2637
ArsI	GACNNNNNNTTYG	2 cut(s)	2514, 2546
Asp700I	GAANNNNTTC	2 cut(s)	344, 368
AspLEI	GCGC	1 cut(s)	434
AspS9I	GGNCC	7 cut(s)	63, 64, 281, 895, 1356, 2114, 2664
AsuC2I	CCSGG	2 cut(s)	1031, 1673
AsuHPI	GGTGA	4 cut(s)	467, 657, 2255, 2408
AsuII	TTCGAA	1 cut(s)	2327
AsuNHI	GCTAGC	1 cut(s)	856
AvaI	CYCGRG	3 cut(s)	668, 2289, 2343
AvaII	GGWCC	3 cut(s)	895, 1356, 2114
BaeGI	GKGCMC	2 cut(s)	67, 1069
BamHI	GGATCC	1 cut(s)	2416
BanI	GGYRCC	1 cut(s)	1668
BanII	GRGCYC	3 cut(s)	67, 648, 821
BauI	CACGAG	2 cut(s)	732, 1068
BbsI	GAAGAC	4 cut(s)	67, 585, 1605, 2527
Bbv12I	GWGCWC	2 cut(s)	648, 1170
BbvI	GCAGC	8 cut(s)	572, 892, 1057, 1069, 2779, 2791, 2794, 2970
BceAI	ACGGC	2 cut(s)	1067, 2859
BciT130I	CCWGG	4 cut(s)	822, 1413, 1578, 2766
BclI	TGATCA	2 cut(s)	922, 3025
BcnI	CCSGG	2 cut(s)	1031, 1673
BcoDI	GTCTC	3 cut(s)	234, 2168, 2886
BfaI	CTAG	5 cut(s)	857, 1239, 1904, 2477, 2805
BfmI	CTRYAG	6 cut(s)	564, 906, 1284, 1570, 1916, 2268
BglII	AGATCT	2 cut(s)	758, 2279
BisI	GCNGC	9 cut(s)	561, 695, 906, 1046, 1083, 2780, 2783, 2793, 2984
BlsI	GCNGC	9 cut(s)	562, 696, 907, 1047, 1084, 2781, 2784, 2794, 2985
Bme1390I	CCNGG	6 cut(s)	822, 1031, 1413, 1578, 1673, 2766
Bme18I	GGWCC	3 cut(s)	895, 1356, 2114
BmeT110I	CYCGRG	3 cut(s)	668, 2289, 2343
BmgBI	CACGTC	1 cut(s)	1322
BmgT120I	GGNCC	7 cut(s)	63, 64, 281, 895, 1356, 2114, 2664
BmiI	GGNNCC	8 cut(s)	65, 417, 896, 1197, 1357, 1670, 2116, 2418
BmrFI	CCNGG	6 cut(s)	822, 1031, 1413, 1578, 1673, 2766
BmrI	ACTGGG	3 cut(s)	288, 1072, 1383
BmsI	GCATC	6 cut(s)	436, 1426, 1807, 1864, 2038, 2560
BmtI	GCTAGC	1 cut(s)	860
BmuI	ACTGGG	3 cut(s)	288, 1072, 1383
BpiI	GAAGAC	4 cut(s)	67, 585, 1605, 2527
BpmI	CTGGAG	3 cut(s)	257, 402, 2432
Bpu10I	CCTNAGC	2 cut(s)	1664, 2979
Bpu14I	TTCGAA	1 cut(s)	2327
BpuEI	CTTGAG	1 cut(s)	2807
BpuMI	CCSGG	2 cut(s)	1031, 1673
BsaAI	YACGTR	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	3006
BsaJI	CCNNGG	9 cut(s)	820, 821, 1029, 1049, 1412, 1576, 1577, 2342, 2765
BsaWI	WCCGGW	2 cut(s)	403, 464
BsaXI	ACNNNNNCTCC	6 cut(s)	268, 298, 1358, 1364, 1388, 1394
Bsc4I	CCNNNNNNNGG	5 cut(s)	193, 1583, 1642, 1665, 1678
Bse1I	ACTGG	8 cut(s)	283, 749, 898, 1067, 1389, 2071, 2420, 2588
Bse3DI	GCAATG	2 cut(s)	342, 2701
Bse8I	GATNNNNATC	1 cut(s)	3006
BseAI	TCCGGA	2 cut(s)	403, 464
BseBI	CCWGG	4 cut(s)	822, 1413, 1578, 2766
BseDI	CCNNGG	9 cut(s)	820, 821, 1029, 1049, 1412, 1576, 1577, 2342, 2765
BseGI	GGATG	9 cut(s)	126, 451, 649, 1879, 2050, 2062, 2541, 2575, 2626
BseJI	GATNNNNATC	1 cut(s)	3006
BseLI	CCNNNNNNNGG	5 cut(s)	193, 1583, 1642, 1665, 1678
BseMI	GCAATG	2 cut(s)	342, 2701
BseMII	CTCAG	9 cut(s)	405, 1092, 1197, 1635, 1678, 2427, 2507, 2924, 2970
BseNI	ACTGG	8 cut(s)	283, 749, 898, 1067, 1389, 2071, 2420, 2588
BseRI	GAGGAG	3 cut(s)	50, 614, 1200
BseSI	GKGCMC	2 cut(s)	67, 1069
BseXI	GCAGC	8 cut(s)	572, 892, 1057, 1069, 2779, 2791, 2794, 2970
BseYI	CCCAGC	1 cut(s)	1352
Bsh1236I	CGCG	2 cut(s)	432, 434
BshFI	GGCC	6 cut(s)	8, 65, 283, 1054, 2665, 2846
BshNI	GGYRCC	1 cut(s)	1668
BsiHKAI	GWGCWC	2 cut(s)	648, 1170
BsiHKCI	CYCGRG	3 cut(s)	668, 2289, 2343
BsiSI	CCGG	4 cut(s)	404, 465, 1031, 1672
BslFI	GGGAC	4 cut(s)	908, 1369, 1659, 2100
BslI	CCNNNNNNNGG	5 cut(s)	193, 1583, 1642, 1665, 1678
BsmAI	GTCTC	3 cut(s)	234, 2168, 2886
BsmFI	GGGAC	4 cut(s)	908, 1369, 1659, 2100
BsmI	GAATGC	2 cut(s)	2305, 2433
BsnI	GGCC	6 cut(s)	8, 65, 283, 1054, 2665, 2846
BsoBI	CYCGRG	3 cut(s)	668, 2289, 2343
Bsp119I	TTCGAA	1 cut(s)	2327
Bsp120I	GGGCCC	1 cut(s)	63
Bsp1286I	GDGCHC	5 cut(s)	67, 648, 821, 1069, 1170
Bsp13I	TCCGGA	2 cut(s)	403, 464
Bsp1407I	TGTACA	2 cut(s)	916, 2350
BspACI	CCGC	4 cut(s)	694, 1587, 2033, 2986
BspANI	GGCC	6 cut(s)	8, 65, 283, 1054, 2665, 2846
BspCNI	CTCAG	9 cut(s)	404, 1093, 1198, 1634, 1677, 2428, 2508, 2923, 2971
BspEI	TCCGGA	2 cut(s)	403, 464
BspFNI	CGCG	2 cut(s)	432, 434
BspHI	TCATGA	1 cut(s)	2589
BspLI	GGNNCC	8 cut(s)	65, 417, 896, 1197, 1357, 1670, 2116, 2418
BspMAI	CTGCAG	1 cut(s)	910
BspOI	GCTAGC	1 cut(s)	860
BspPI	GGATC	9 cut(s)	33, 257, 537, 1031, 1403, 1929, 2411, 2424, 2997
BspQI	GCTCTTC	1 cut(s)	2324
BspT104I	TTCGAA	1 cut(s)	2327
BspT107I	GGYRCC	1 cut(s)	1668
BsrDI	GCAATG	2 cut(s)	342, 2701
BsrGI	TGTACA	2 cut(s)	916, 2350
BsrI	ACTGG	8 cut(s)	283, 749, 898, 1067, 1389, 2071, 2420, 2588
BssECI	CCNNGG	9 cut(s)	820, 821, 1029, 1049, 1412, 1576, 1577, 2342, 2765
BssSI	CACGAG	2 cut(s)	732, 1068
Bst2BI	CACGAG	2 cut(s)	732, 1068
Bst2UI	CCWGG	4 cut(s)	822, 1413, 1578, 2766
Bst4CI	ACNGT	6 cut(s)	219, 249, 1604, 1640, 2958, 3034
Bst6I	CTCTTC	3 cut(s)	463, 2324, 2727
BstAUI	TGTACA	2 cut(s)	916, 2350
BstBAI	YACGTR	1 cut(s)	161
BstBI	TTCGAA	1 cut(s)	2327
BstC8I	GCNNGC	6 cut(s)	817, 858, 1056, 1589, 2462, 2513
BstDSI	CCRYGG	1 cut(s)	1049
BstF5I	GGATG	9 cut(s)	126, 451, 649, 1879, 2050, 2062, 2541, 2575, 2626
BstFNI	CGCG	2 cut(s)	432, 434
BstHHI	GCGC	1 cut(s)	434
BstMAI	GTCTC	3 cut(s)	234, 2168, 2886
BstMWI	GCNNNNNNNGC	7 cut(s)	289, 1051, 1064, 1235, 1943, 2593, 2801
BstNI	CCWGG	4 cut(s)	822, 1413, 1578, 2766
BstSCI	CCNGG	6 cut(s)	820, 1029, 1411, 1576, 1671, 2764
BstSFI	CTRYAG	6 cut(s)	564, 906, 1284, 1570, 1916, 2268
BstSLI	GKGCMC	2 cut(s)	67, 1069
BstSNI	TACGTA	1 cut(s)	161
BstUI	CGCG	2 cut(s)	432, 434
BstV1I	GCAGC	8 cut(s)	572, 892, 1057, 1069, 2779, 2791, 2794, 2970
BstV2I	GAAGAC	4 cut(s)	67, 585, 1605, 2527
BstX2I	RGATCY	7 cut(s)	25, 758, 1036, 1921, 2279, 2416, 2989
BstXI	CCANNNNNNTGG	1 cut(s)	2439
BstYI	RGATCY	7 cut(s)	25, 758, 1036, 1921, 2279, 2416, 2989
BsuRI	GGCC	6 cut(s)	8, 65, 283, 1054, 2665, 2846
BtgI	CCRYGG	1 cut(s)	1049
BtgZI	GCGATG	2 cut(s)	1784, 1906
BtrI	CACGTC	1 cut(s)	1322
BtsCI	GGATG	9 cut(s)	126, 451, 649, 1879, 2050, 2062, 2541, 2575, 2626
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	5 cut(s)	215, 287, 756, 966, 1645
Cac8I	GCNNGC	6 cut(s)	817, 858, 1056, 1589, 2462, 2513
CciI	TCATGA	1 cut(s)	2589
CfoI	GCGC	1 cut(s)	434
Cfr13I	GGNCC	7 cut(s)	63, 64, 281, 895, 1356, 2114, 2664
CseI	GACGC	2 cut(s)	341, 1443
Csp6I	GTAC	8 cut(s)	388, 679, 917, 2066, 2183, 2286, 2351, 2875
CviAII	CATG	6 cut(s)	442, 631, 920, 1274, 1955, 2590
CviQI	GTAC	8 cut(s)	388, 679, 917, 2066, 2183, 2286, 2351, 2875
DraIII	CACNNNGTG	1 cut(s)	1642
Eam1104I	CTCTTC	3 cut(s)	463, 2324, 2727
EarI	CTCTTC	3 cut(s)	463, 2324, 2727
Ecl136II	GAGCTC	1 cut(s)	646
Eco105I	TACGTA	1 cut(s)	161
Eco147I	AGGCCT	1 cut(s)	8
Eco24I	GRGCYC	3 cut(s)	67, 648, 821
Eco32I	GATATC	1 cut(s)	663
Eco47I	GGWCC	3 cut(s)	895, 1356, 2114
Eco53kI	GAGCTC	1 cut(s)	646
Eco57I	CTGAAG	3 cut(s)	579, 674, 1005
Eco88I	CYCGRG	3 cut(s)	668, 2289, 2343
EcoICRI	GAGCTC	1 cut(s)	646
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRI	GAATTC	2 cut(s)	182, 2323
EcoRII	CCWGG	4 cut(s)	820, 1411, 1576, 2764
EcoRV	GATATC	1 cut(s)	663
EcoT38I	GRGCYC	3 cut(s)	67, 648, 821
FaeI	CATG	6 cut(s)	445, 634, 923, 1277, 1958, 2593
FaqI	GGGAC	4 cut(s)	908, 1369, 1659, 2100
FatI	CATG	6 cut(s)	441, 630, 919, 1273, 1954, 2589
FauI	CCCGC	2 cut(s)	1580, 2979
FauNDI	CATATG	1 cut(s)	2941
FbaI	TGATCA	2 cut(s)	922, 3025
FblI	GTMKAC	1 cut(s)	2915
Fnu4HI	GCNGC	9 cut(s)	561, 695, 906, 1046, 1083, 2780, 2783, 2793, 2984
FokI	GGATG	9 cut(s)	133, 458, 636, 1886, 2057, 2069, 2548, 2582, 2633
FriOI	GRGCYC	3 cut(s)	67, 648, 821
Fsp4HI	GCNGC	9 cut(s)	561, 695, 906, 1046, 1083, 2780, 2783, 2793, 2984
FspBI	CTAG	5 cut(s)	857, 1239, 1904, 2477, 2805
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	9 cut(s)	561, 695, 906, 1046, 1083, 2780, 2783, 2793, 2984
GsaI	CCCAGC	1 cut(s)	1356
GsuI	CTGGAG	3 cut(s)	257, 402, 2432
HaeIII	GGCC	6 cut(s)	8, 65, 283, 1054, 2665, 2846
HapII	CCGG	4 cut(s)	404, 465, 1031, 1672
HgaI	GACGC	2 cut(s)	341, 1443
HhaI	GCGC	1 cut(s)	434
Hin1II	CATG	6 cut(s)	445, 634, 923, 1277, 1958, 2593
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HincII	GTYRAC	4 cut(s)	493, 991, 1264, 2214
HindII	GTYRAC	4 cut(s)	493, 991, 1264, 2214
HindIII	AAGCTT	2 cut(s)	44, 2382
HinfI	GANTC	9 cut(s)	929, 1397, 1742, 2126, 2210, 2443, 2473, 2599, 2688
HpaII	CCGG	4 cut(s)	404, 465, 1031, 1672
HphI	GGTGA	4 cut(s)	467, 657, 2255, 2408
HpyAV	CCTTC	5 cut(s)	187, 358, 1089, 1535, 2234
HpyCH4III	ACNGT	6 cut(s)	219, 249, 1604, 1640, 2958, 3034
HpyCH4IV	ACGT	5 cut(s)	160, 587, 1159, 1321, 2881
HpyF10VI	GCNNNNNNNGC	7 cut(s)	289, 1051, 1064, 1235, 1943, 2593, 2801
HpySE526I	ACGT	5 cut(s)	160, 587, 1159, 1321, 2881
Hsp92II	CATG	6 cut(s)	445, 634, 923, 1277, 1958, 2593
HspAI	GCGC	1 cut(s)	432
Kpn2I	TCCGGA	2 cut(s)	403, 464
Ksp22I	TGATCA	2 cut(s)	922, 3025
LguI	GCTCTTC	1 cut(s)	2324
LmnI	GCTCC	6 cut(s)	421, 643, 651, 1117, 1682, 2361
Lsp1109I	GCAGC	8 cut(s)	572, 892, 1057, 1069, 2779, 2791, 2794, 2970
LweI	GCATC	6 cut(s)	436, 1426, 1807, 1864, 2038, 2560
MaeI	CTAG	5 cut(s)	857, 1239, 1904, 2477, 2805
MaeII	ACGT	5 cut(s)	160, 587, 1159, 1321, 2881
MaeIII	GTNAC	6 cut(s)	82, 156, 1735, 2261, 2807, 2958
MfeI	CAATTG	3 cut(s)	138, 321, 1728
MflI	RGATCY	7 cut(s)	25, 758, 1036, 1921, 2279, 2416, 2989
MhlI	GDGCHC	5 cut(s)	67, 648, 821, 1069, 1170
MlyI	GAGTC	3 cut(s)	2135, 2219, 2437
MmeI	TCCRAC	4 cut(s)	170, 1537, 2404, 2864
MroI	TCCGGA	2 cut(s)	403, 464
MroXI	GAANNNNTTC	2 cut(s)	344, 368
MslI	CAYNNNNRTG	2 cut(s)	2437, 2742
MspA1I	CMGCKG	2 cut(s)	694, 905
MspI	CCGG	4 cut(s)	404, 465, 1031, 1672
MspR9I	CCNGG	6 cut(s)	822, 1031, 1413, 1578, 1673, 2766
MunI	CAATTG	3 cut(s)	138, 321, 1728
Mva1269I	GAATGC	2 cut(s)	2305, 2433
MvaI	CCWGG	4 cut(s)	822, 1413, 1578, 2766
MvnI	CGCG	2 cut(s)	432, 434
MwoI	GCNNNNNNNGC	7 cut(s)	289, 1051, 1064, 1235, 1943, 2593, 2801
NciI	CCSGG	2 cut(s)	1031, 1673
NdeI	CATATG	1 cut(s)	2941
NheI	GCTAGC	1 cut(s)	856
NlaIII	CATG	6 cut(s)	445, 634, 923, 1277, 1958, 2593
NlaIV	GGNNCC	8 cut(s)	65, 417, 896, 1197, 1357, 1670, 2116, 2418
NmeAIII	GCCGAG	1 cut(s)	2149
NmuCI	GTSAC	3 cut(s)	2261, 2807, 2958
NspV	TTCGAA	1 cut(s)	2327
OliI	CACNNNNGTG	1 cut(s)	2437
PaeR7I	CTCGAG	1 cut(s)	2289
PagI	TCATGA	1 cut(s)	2589
PasI	CCCWGGG	2 cut(s)	821, 1577
PceI	AGGCCT	1 cut(s)	8
PciSI	GCTCTTC	1 cut(s)	2324
PctI	GAATGC	2 cut(s)	2305, 2433
PdmI	GAANNNNTTC	2 cut(s)	344, 368
PfeI	GAWTC	6 cut(s)	929, 1397, 1742, 2473, 2599, 2688
PflMI	CCANNNNNTGG	1 cut(s)	1642
PkrI	GCNGC	9 cut(s)	562, 696, 907, 1047, 1084, 2781, 2784, 2794, 2985
PleI	GAGTC	3 cut(s)	2134, 2218, 2437
PpsI	GAGTC	3 cut(s)	2134, 2218, 2437
Ppu21I	YACGTR	1 cut(s)	161
PsiI	TTATAA	1 cut(s)	1020
Psp124BI	GAGCTC	1 cut(s)	648
Psp1406I	AACGTT	1 cut(s)	587
Psp6I	CCWGG	4 cut(s)	820, 1411, 1576, 2764
PspFI	CCCAGC	1 cut(s)	1352
PspGI	CCWGG	4 cut(s)	820, 1411, 1576, 2764
PspN4I	GGNNCC	8 cut(s)	65, 417, 896, 1197, 1357, 1670, 2116, 2418
PspOMI	GGGCCC	1 cut(s)	63
PspPI	GGNCC	7 cut(s)	63, 64, 281, 895, 1356, 2114, 2664
PstI	CTGCAG	1 cut(s)	910
PsuI	RGATCY	7 cut(s)	25, 758, 1036, 1921, 2279, 2416, 2989
PvuII	CAGCTG	1 cut(s)	905
RsaI	GTAC	8 cut(s)	389, 680, 918, 2067, 2184, 2287, 2352, 2876
RsaNI	GTAC	8 cut(s)	388, 679, 917, 2066, 2183, 2286, 2351, 2875
RseI	CAYNNNNRTG	2 cut(s)	2437, 2742
SacI	GAGCTC	1 cut(s)	648
SapI	GCTCTTC	1 cut(s)	2324
SatI	GCNGC	9 cut(s)	561, 695, 906, 1046, 1083, 2780, 2783, 2793, 2984
Sau96I	GGNCC	7 cut(s)	63, 64, 281, 895, 1356, 2114, 2664
SchI	GAGTC	3 cut(s)	2135, 2219, 2437
ScrFI	CCNGG	6 cut(s)	822, 1031, 1413, 1578, 1673, 2766
SduI	GDGCHC	5 cut(s)	67, 648, 821, 1069, 1170
SfaNI	GCATC	6 cut(s)	436, 1426, 1807, 1864, 2038, 2560
SfcI	CTRYAG	6 cut(s)	564, 906, 1284, 1570, 1916, 2268
Sfr274I	CTCGAG	1 cut(s)	2289
SfuI	TTCGAA	1 cut(s)	2327
SinI	GGWCC	3 cut(s)	895, 1356, 2114
SlaI	CTCGAG	1 cut(s)	2289
SmiMI	CAYNNNNRTG	2 cut(s)	2437, 2742
SmlI	CTYRAG	2 cut(s)	2289, 2786
SmoI	CTYRAG	2 cut(s)	2289, 2786
SnaBI	TACGTA	1 cut(s)	161
SseBI	AGGCCT	1 cut(s)	8
SsiI	CCGC	4 cut(s)	694, 1587, 2033, 2986
SspI	AATATT	2 cut(s)	1854, 2550
SspMI	CTAG	5 cut(s)	857, 1239, 1904, 2477, 2805
SstI	GAGCTC	1 cut(s)	648
StuI	AGGCCT	1 cut(s)	8
StyD4I	CCNGG	6 cut(s)	820, 1029, 1411, 1576, 1671, 2764
TaaI	ACNGT	6 cut(s)	219, 249, 1604, 1640, 2958, 3034
TaiI	ACGT	5 cut(s)	163, 590, 1162, 1324, 2884
TaqI	TCGA	5 cut(s)	33, 49, 152, 2290, 2327
TatI	WGTACW	5 cut(s)	678, 916, 2182, 2350, 2874
TauI	GCSGC	1 cut(s)	697
TfiI	GAWTC	6 cut(s)	929, 1397, 1742, 2473, 2599, 2688
TscAI	CASTG	5 cut(s)	222, 294, 756, 973, 1645
TseFI	GTSAC	3 cut(s)	2261, 2807, 2958
TseI	GCWGC	8 cut(s)	560, 905, 1045, 1082, 2779, 2782, 2792, 2983
Tsp45I	GTSAC	3 cut(s)	2261, 2807, 2958
TspGWI	ACGGA	3 cut(s)	176, 924, 2005
TspRI	CASTG	5 cut(s)	222, 294, 756, 973, 1645
Van91I	CCANNNNNTGG	1 cut(s)	1642
VpaK11BI	GGWCC	3 cut(s)	895, 1356, 2114
XapI	RAATTY	7 cut(s)	124, 182, 808, 1278, 1783, 2323, 2637
XcmI	CCANNNNNNNNNTGG	2 cut(s)	294, 1366
XhoI	CTCGAG	1 cut(s)	2289
XmiI	GTMKAC	1 cut(s)	2915
XmnI	GAANNNNTTC	2 cut(s)	344, 368
XspI	CTAG	5 cut(s)	857, 1239, 1904, 2477, 2805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.